Wall clock time and date at job start Tue Mar 31 2020 06:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47089 * 2 1 4 4 N 1.46504 * 109.47167 * 120.00435 * 2 1 3 5 5 C 1.36937 * 119.99646 * 274.99242 * 4 2 1 6 6 H 1.08004 * 120.00243 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00237 * 179.97438 * 5 4 2 8 8 N 1.31615 * 119.99498 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00412 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47145 * 59.99798 * 9 7 5 11 11 H 1.48499 * 109.47335 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46905 * 300.00028 * 9 7 5 13 13 C 1.50706 * 109.47034 * 240.00121 * 2 1 3 14 14 C 1.38291 * 119.92804 * 279.72295 * 13 2 1 15 15 C 1.38107 * 120.06545 * 179.71935 * 14 13 2 16 16 C 1.38862 * 119.93199 * 0.55876 * 15 14 13 17 17 N 1.39955 * 120.07158 * 179.70224 * 16 15 14 18 18 C 1.46070 * 118.51853 * 269.40104 * 17 16 15 19 19 C 1.53130 * 109.91560 * 160.53628 * 18 17 16 20 20 C 1.53482 * 108.36282 * 47.97743 * 19 18 17 21 21 O 1.45432 * 108.10984 * 298.26775 * 20 19 18 22 22 C 1.33728 * 118.52419 * 89.12733 * 17 16 15 23 23 O 1.21509 * 118.45639 * 2.29262 * 22 17 16 24 24 C 1.38862 * 119.86038 * 359.71732 * 16 15 14 25 25 C 1.38113 * 119.92943 * 0.02562 * 24 16 15 26 26 H 1.09006 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47033 * 299.99323 * 1 2 3 28 28 H 1.09000 * 109.47168 * 60.00167 * 1 2 3 29 29 H 0.96996 * 120.00579 * 95.00076 * 4 2 1 30 30 H 0.97007 * 120.00032 * 179.97438 * 8 7 5 31 31 H 1.08004 * 119.96378 * 0.02562 * 14 13 2 32 32 H 1.08000 * 120.03478 * 180.27106 * 15 14 13 33 33 H 1.09004 * 109.39292 * 280.66763 * 18 17 16 34 34 H 1.08997 * 109.39735 * 40.48557 * 18 17 16 35 35 H 1.08997 * 109.68678 * 167.69990 * 19 18 17 36 36 H 1.08997 * 109.67906 * 288.22245 * 19 18 17 37 37 H 1.08996 * 109.73780 * 57.92793 * 20 19 18 38 38 H 1.09003 * 109.73337 * 178.62045 * 20 19 18 39 39 H 1.08003 * 120.03613 * 179.97438 * 24 16 15 40 40 H 1.08001 * 119.96407 * 180.02562 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0076 2.3757 6 1 1.8921 1.0403 2.4243 7 6 2.6115 -0.6620 3.5093 8 7 2.9243 -1.9391 3.4501 9 14 2.7894 0.2696 5.1185 10 1 1.4669 0.8066 5.5284 11 1 3.2984 -0.6488 6.1685 12 1 3.7448 1.3920 4.9376 13 6 2.0323 -0.7104 -1.2305 14 6 2.0715 -2.0924 -1.2617 15 6 2.5258 -2.7465 -2.3900 16 6 2.9545 -2.0148 -3.4896 17 7 3.4214 -2.6745 -4.6322 18 6 4.8477 -2.9734 -4.7310 19 6 5.0783 -4.0804 -5.7637 20 6 4.2942 -3.7269 -7.0348 21 8 2.8811 -3.6760 -6.6947 22 6 2.5407 -3.0077 -5.5818 23 8 1.3785 -2.6862 -5.4322 24 6 2.9193 -0.6271 -3.4530 25 6 2.4589 0.0210 -2.3237 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 2.2491 -1.6318 1.1526 30 1 3.2477 -2.3964 4.2421 31 1 1.7417 -2.6609 -0.4046 32 1 2.5521 -3.8258 -2.4154 33 1 5.3854 -2.0758 -5.0365 34 1 5.2165 -3.3035 -3.7599 35 1 6.1411 -4.1508 -5.9954 36 1 4.7254 -5.0321 -5.3665 37 1 4.6179 -2.7557 -7.4089 38 1 4.4625 -4.4896 -7.7951 39 1 3.2525 -0.0551 -4.3065 40 1 2.4309 1.1003 -2.2948 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814661625.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:11 Heat of formation + Delta-G solvation = -50.884881 kcal Electronic energy + Delta-G solvation = -22805.302152 eV Core-core repulsion = 19391.825225 eV Total energy + Delta-G solvation = -3413.476927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.39181 -40.40684 -38.41211 -37.76588 -36.33718 -34.10317 -32.91903 -31.99378 -30.80014 -29.39194 -27.42143 -26.06170 -25.13447 -24.06495 -23.37856 -21.54170 -20.56310 -19.48054 -19.27018 -18.75723 -17.64875 -17.08645 -16.68710 -16.16945 -16.07036 -15.92467 -15.36112 -15.28746 -14.98733 -14.71169 -14.49398 -14.31350 -14.23959 -13.61879 -13.48133 -13.17416 -12.96959 -12.73288 -12.66038 -12.58805 -12.51039 -12.21552 -12.21041 -11.68976 -11.65541 -11.60979 -11.38145 -10.98148 -10.17309 -9.90265 -9.59495 -9.01725 -7.92101 -5.20791 0.21792 0.43879 1.36481 1.49057 1.51976 1.55163 1.57772 2.40572 2.57272 2.73525 3.42005 3.58692 3.68085 3.82917 3.94374 3.98997 4.02892 4.09009 4.21452 4.38573 4.43032 4.45397 4.54114 4.63425 4.70393 4.73771 4.77651 4.98694 5.00946 5.03596 5.11507 5.15933 5.29332 5.43722 5.46559 5.52264 5.52964 5.76338 6.02598 6.29621 6.57565 6.93483 7.36023 8.09767 8.34759 9.31351 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029880 B = 0.003357 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.858429 B = 8337.673167 C = 8797.901934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.202 3.798 3 H 0.062 0.938 4 N -0.734 5.734 5 C -0.240 4.240 6 H 0.079 0.921 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.277 1.277 13 C -0.074 4.074 14 C -0.110 4.110 15 C -0.111 4.111 16 C 0.123 3.877 17 N -0.568 5.568 18 C 0.094 3.906 19 C -0.164 4.164 20 C 0.048 3.952 21 O -0.357 6.357 22 C 0.656 3.344 23 O -0.576 6.576 24 C -0.103 4.103 25 C -0.107 4.107 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.375 0.625 30 H 0.250 0.750 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.058 -1.867 -22.344 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.094 3.906 3 H 0.080 0.920 4 N -0.376 5.376 5 C -0.372 4.372 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.203 1.203 13 C -0.074 4.074 14 C -0.129 4.129 15 C -0.131 4.131 16 C 0.034 3.966 17 N -0.310 5.310 18 C -0.026 4.026 19 C -0.201 4.201 20 C -0.025 4.025 21 O -0.269 6.269 22 C 0.411 3.589 23 O -0.464 6.464 24 C -0.122 4.122 25 C -0.126 4.126 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.208 0.792 30 H 0.059 0.941 31 H 0.129 0.871 32 H 0.143 0.857 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.164 0.836 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.395 -1.734 -22.417 23.669 hybrid contribution 0.100 -0.287 1.384 1.417 sum 7.495 -2.021 -21.033 22.420 Atomic orbital electron populations 1.22282 0.97008 1.00822 1.00975 1.19394 0.92850 0.94912 0.83444 0.92015 1.42718 1.78482 1.10469 1.05912 1.19618 1.35026 0.94378 0.88131 0.90359 1.25539 1.02934 0.96888 1.01403 1.69815 1.52590 1.10229 1.29461 0.85219 0.77931 0.77313 0.79337 1.20538 1.22375 1.20281 1.20388 0.97167 0.93973 0.95904 1.20847 0.99968 0.94616 0.97483 1.21243 0.98861 1.00102 0.92865 1.17288 1.01924 0.91141 0.86269 1.44701 1.09449 1.59547 1.17324 1.22092 0.77517 1.00555 1.02440 1.22591 1.05182 0.98290 0.94074 1.24015 0.74080 1.05821 0.98571 1.86700 1.32209 1.68890 1.39091 1.17916 0.84661 0.76796 0.79521 1.90992 1.19342 1.57008 1.79044 1.21341 0.99331 0.92882 0.98655 1.21109 0.98501 1.00987 0.91955 0.94364 0.93477 0.91392 0.79208 0.94099 0.87073 0.85693 0.88451 0.89055 0.83648 0.90158 0.88646 0.83758 0.83809 0.83309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 9.47 71.98 0.68 -4.96 16 2 C 0.20 8.17 3.09 44.25 0.14 8.31 16 3 H 0.06 2.42 7.94 -2.39 -0.02 2.40 16 4 N -0.73 -37.31 5.07 -326.49 -1.66 -38.97 16 5 C -0.24 -13.27 9.93 84.03 0.83 -12.43 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 7 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 8 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 9 Si 0.97 46.04 29.55 68.60 2.03 48.06 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 C -0.07 -2.65 4.96 -19.84 -0.10 -2.75 16 14 C -0.11 -4.06 9.05 22.25 0.20 -3.86 16 15 C -0.11 -3.62 9.97 22.39 0.22 -3.39 16 16 C 0.12 3.58 4.14 38.14 0.16 3.74 16 17 N -0.57 -13.46 2.86 -763.95 -2.19 -15.65 16 18 C 0.09 1.24 6.47 86.50 0.56 1.80 16 19 C -0.16 -1.15 6.27 30.80 0.19 -0.96 16 20 C 0.05 0.43 7.21 72.14 0.52 0.95 16 21 O -0.36 -8.13 10.49 -51.09 -0.54 -8.67 16 22 C 0.66 18.97 8.28 129.95 1.08 20.04 16 23 O -0.58 -22.60 16.92 19.93 0.34 -22.26 16 24 C -0.10 -2.81 9.97 22.39 0.22 -2.59 16 25 C -0.11 -3.16 9.66 22.25 0.21 -2.95 16 26 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.37 20.36 6.04 -92.71 -0.56 19.80 16 30 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 31 H 0.11 4.48 6.89 -2.91 -0.02 4.46 16 32 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 33 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.09 1.24 8.10 -2.39 -0.02 1.22 16 35 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 40 H 0.15 3.64 8.03 -2.91 -0.02 3.61 16 Total: -1.00 -76.61 337.62 4.14 -72.47 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: 0.48 Total: 27.05 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.39 Total: -2.91 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -3.56 Total: -113.74 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.20 Total: -30.93 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -76.61 4.14 -72.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814661625.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.582 kcal (2) G-P(sol) polarization free energy of solvation -76.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds