Wall clock time and date at job start Tue Mar 31 2020 06:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99532 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47001 * 119.99934 * 10 8 6 13 13 H 1.48497 * 109.47392 * 239.99632 * 10 8 6 14 14 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 15 15 C 1.38282 * 119.92950 * 279.72304 * 14 2 1 16 16 C 1.38117 * 120.07039 * 179.76833 * 15 14 2 17 17 C 1.38863 * 119.92782 * 0.48343 * 16 15 14 18 18 N 1.39954 * 120.06912 * 179.78764 * 17 16 15 19 19 C 1.47091 * 125.56049 * 359.70605 * 18 17 16 20 20 C 1.54085 * 103.77840 * 179.86605 * 19 18 17 21 21 O 1.45696 * 104.01236 * 0.37553 * 20 19 18 22 22 C 1.33787 * 109.47363 * 359.75396 * 21 20 19 23 23 O 1.21507 * 123.07564 * 180.02562 * 22 21 20 24 24 C 1.38864 * 119.86210 * 359.77804 * 17 16 15 25 25 C 1.38118 * 119.92872 * 359.97438 * 24 17 16 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 29 29 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 30 30 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 31 31 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 32 32 H 0.97001 * 119.99132 * 180.02562 * 9 8 6 33 33 H 1.08001 * 119.96446 * 0.02562 * 15 14 2 34 34 H 1.08002 * 120.03719 * 180.23521 * 16 15 14 35 35 H 1.09001 * 110.56013 * 298.57319 * 19 18 17 36 36 H 1.09002 * 110.56424 * 61.42038 * 19 18 17 37 37 H 1.09001 * 110.73102 * 241.63776 * 20 19 18 38 38 H 1.09002 * 110.43030 * 118.96390 * 20 19 18 39 39 H 1.07997 * 120.03452 * 180.02562 * 24 17 16 40 40 H 1.07998 * 119.96509 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5885 -0.5214 3.5557 7 1 2.8381 -1.5694 3.4794 8 6 2.7319 0.1355 4.7595 9 7 2.4274 1.4116 4.8525 10 14 3.3584 -0.7870 6.2581 11 1 3.6269 -2.2010 5.8925 12 1 4.6118 -0.1535 6.7410 13 1 2.3343 -0.7399 7.3323 14 6 2.0323 -0.7104 -1.2304 15 6 2.0714 -2.0923 -1.2615 16 6 2.5268 -2.7466 -2.3895 17 6 2.9549 -2.0149 -3.4893 18 7 3.4211 -2.6747 -4.6322 19 6 3.5161 -4.1330 -4.7990 20 6 4.0801 -4.3035 -6.2228 21 8 4.2508 -2.9378 -6.7005 22 6 3.8589 -2.0808 -5.7508 23 8 3.8962 -0.8743 -5.8899 24 6 2.9195 -0.6272 -3.4529 25 6 2.4582 0.0210 -2.3239 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 2.9173 -1.1205 1.0288 30 1 2.7589 1.0462 2.1182 31 1 1.0871 0.6164 2.5525 32 1 2.5287 1.8737 5.6993 33 1 1.7417 -2.6608 -0.4044 34 1 2.5535 -3.8260 -2.4146 35 1 4.1965 -4.5592 -4.0618 36 1 2.5305 -4.5922 -4.7222 37 1 3.3755 -4.8442 -6.8547 38 1 5.0393 -4.8205 -6.1926 39 1 3.2514 -0.0554 -4.3069 40 1 2.4300 1.1002 -2.2951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839542334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:24 Heat of formation + Delta-G solvation = -35.942206 kcal Electronic energy + Delta-G solvation = -22314.428138 eV Core-core repulsion = 18901.599174 eV Total energy + Delta-G solvation = -3412.828964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.20375 -39.45793 -37.66753 -36.64706 -35.03009 -32.79552 -30.98473 -30.94220 -29.90044 -28.30624 -26.13255 -24.63553 -24.13604 -22.34853 -21.81019 -21.11912 -19.87809 -18.35315 -17.85468 -17.25134 -16.76749 -15.82425 -15.46487 -15.04268 -14.78353 -14.60893 -14.56549 -14.32623 -14.01100 -13.65776 -13.44948 -13.26741 -12.80607 -12.73413 -12.41849 -12.21372 -11.62574 -11.45756 -11.40922 -11.30750 -11.17359 -10.87275 -10.64922 -10.37481 -10.31305 -10.26399 -9.83661 -9.16111 -8.87051 -8.48846 -7.94472 -7.32643 -6.03429 -4.05169 1.25762 1.49465 1.95081 2.43789 2.96044 3.30602 3.37862 3.42489 3.58788 3.85629 4.16241 4.17183 4.42746 4.68854 4.78947 4.92264 4.92595 5.05127 5.13741 5.32579 5.34488 5.40395 5.55459 5.69148 5.88525 5.97562 6.11050 6.24019 6.34580 6.37281 6.43323 6.54930 6.71887 6.84425 6.96672 7.10658 7.28386 7.42716 7.62481 7.78909 8.13123 8.39273 8.60255 9.04338 9.59687 11.07776 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027970 B = 0.002917 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.820751 B = 9598.006111 C =10033.544272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.119 3.881 3 H 0.044 0.956 4 N -0.682 5.682 5 C 0.193 3.807 6 C -0.513 4.513 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C -0.092 4.092 15 C -0.071 4.071 16 C -0.154 4.154 17 C 0.163 3.837 18 N -0.567 5.567 19 C 0.059 3.941 20 C 0.042 3.958 21 O -0.324 6.324 22 C 0.642 3.358 23 O -0.502 6.502 24 C -0.153 4.153 25 C -0.087 4.087 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.330 0.670 30 H -0.013 1.013 31 H 0.030 0.970 32 H 0.261 0.739 33 H 0.141 0.859 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.153 0.847 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 -12.837 -21.111 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.009 3.991 3 H 0.062 0.938 4 N -0.313 5.313 5 C 0.067 3.933 6 C -0.551 4.551 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.726 3.274 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.094 4.094 15 C -0.089 4.089 16 C -0.175 4.175 17 C 0.072 3.928 18 N -0.304 5.304 19 C -0.064 4.064 20 C -0.033 4.033 21 O -0.234 6.234 22 C 0.397 3.603 23 O -0.386 6.386 24 C -0.173 4.173 25 C -0.106 4.106 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.147 0.853 30 H 0.004 0.996 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.170 0.830 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.284 -12.285 -21.181 24.487 hybrid contribution 1.102 -0.078 0.764 1.343 sum 1.386 -12.364 -20.417 23.908 Atomic orbital electron populations 1.21733 0.94328 1.01905 1.00800 1.20436 0.95745 0.95295 0.87637 0.93833 1.60842 1.32471 1.34611 1.03412 1.19610 0.96579 0.90236 0.86890 1.21217 1.43168 0.96755 0.94007 0.91933 1.24994 0.95700 0.94902 0.99030 1.69976 1.48910 1.09016 1.25808 0.86438 0.78361 0.79940 0.82632 1.19674 1.21124 1.21022 1.20238 0.99076 0.94067 0.95986 1.20938 0.96903 0.94084 0.97018 1.20682 1.04627 0.99290 0.92886 1.17377 0.99362 0.91529 0.84565 1.45345 1.63585 1.07082 1.14385 1.22971 1.04350 0.81235 0.97850 1.24354 1.04071 0.81418 0.93462 1.87324 1.79325 1.17957 1.38762 1.18458 0.76987 0.85821 0.79012 1.90960 1.58165 1.09324 1.80167 1.21475 1.02905 0.92265 1.00628 1.21000 0.97403 1.00060 0.92155 0.92088 0.93577 0.92388 0.85282 0.99572 0.95213 0.92973 0.84150 0.85944 0.88015 0.88084 0.87135 0.87151 0.83008 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.39 37.16 0.35 -1.78 16 2 C 0.12 2.10 2.82 -68.86 -0.19 1.91 16 3 H 0.04 0.82 7.66 -51.93 -0.40 0.42 16 4 N -0.68 -14.23 5.67 -109.22 -0.62 -14.85 16 5 C 0.19 5.01 5.24 -4.98 -0.03 4.99 16 6 C -0.51 -14.41 9.32 -34.44 -0.32 -14.73 16 7 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 10 Si 0.90 21.60 29.54 -169.99 -5.02 16.57 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C -0.09 -1.41 4.72 -104.59 -0.49 -1.90 16 15 C -0.07 -0.97 8.99 -39.61 -0.36 -1.33 16 16 C -0.15 -1.80 9.49 -39.39 -0.37 -2.18 16 17 C 0.16 2.08 6.63 -83.69 -0.56 1.52 16 18 N -0.57 -6.04 3.16 -118.27 -0.37 -6.42 16 19 C 0.06 0.30 6.49 -3.15 -0.02 0.28 16 20 C 0.04 0.17 8.23 37.72 0.31 0.48 16 21 O -0.32 -3.22 11.09 -37.87 -0.42 -3.64 16 22 C 0.64 8.16 8.77 53.71 0.47 8.63 16 23 O -0.50 -8.19 14.74 -19.11 -0.28 -8.47 16 24 C -0.15 -2.20 9.31 -39.39 -0.37 -2.56 16 25 C -0.09 -1.26 9.66 -39.61 -0.38 -1.65 16 26 H 0.06 1.09 7.45 -51.93 -0.39 0.70 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.33 6.71 7.97 -39.29 -0.31 6.40 16 30 H -0.01 -0.38 8.06 -51.93 -0.42 -0.79 16 31 H 0.03 0.83 7.44 -51.93 -0.39 0.44 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.14 1.95 7.70 -52.49 -0.40 1.54 16 34 H 0.12 1.06 7.31 -52.49 -0.38 0.67 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.15 2.34 5.24 -52.49 -0.28 2.06 16 40 H 0.13 1.69 8.03 -52.49 -0.42 1.27 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -33.82 335.16 -8.45 -42.28 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.47 Total: 2.38 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -2.06 Total: -6.83 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.26 Total: -47.34 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.70 Total: -12.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.82 -8.45 -42.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839542334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.334 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds