Wall clock time and date at job start Tue Mar 31 2020 06:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.50697 * 109.46943 * 180.02562 * 5 4 2 7 7 H 1.08000 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00023 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99532 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00003 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47381 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.47001 * 119.99934 * 10 8 6 13 13 H 1.48497 * 109.47392 * 239.99632 * 10 8 6 14 14 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 15 15 C 1.38282 * 119.92950 * 279.72304 * 14 2 1 16 16 C 1.38117 * 120.07039 * 179.76833 * 15 14 2 17 17 C 1.38863 * 119.92782 * 0.48343 * 16 15 14 18 18 N 1.39954 * 120.06912 * 179.78764 * 17 16 15 19 19 C 1.47091 * 125.56049 * 359.70605 * 18 17 16 20 20 C 1.54085 * 103.77840 * 179.86605 * 19 18 17 21 21 O 1.45696 * 104.01236 * 0.37553 * 20 19 18 22 22 C 1.33787 * 109.47363 * 359.75396 * 21 20 19 23 23 O 1.21507 * 123.07564 * 180.02562 * 22 21 20 24 24 C 1.38864 * 119.86210 * 359.77804 * 17 16 15 25 25 C 1.38118 * 119.92872 * 359.97438 * 24 17 16 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 29 29 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 30 30 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 31 31 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 32 32 H 0.97001 * 119.99132 * 180.02562 * 9 8 6 33 33 H 1.08001 * 119.96446 * 0.02562 * 15 14 2 34 34 H 1.08002 * 120.03719 * 180.23521 * 16 15 14 35 35 H 1.09001 * 110.56013 * 298.57319 * 19 18 17 36 36 H 1.09002 * 110.56424 * 61.42038 * 19 18 17 37 37 H 1.09001 * 110.73102 * 241.63776 * 20 19 18 38 38 H 1.09002 * 110.43030 * 118.96390 * 20 19 18 39 39 H 1.07997 * 120.03452 * 180.02562 * 24 17 16 40 40 H 1.07998 * 119.96509 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5885 -0.5214 3.5557 7 1 2.8381 -1.5694 3.4794 8 6 2.7319 0.1355 4.7595 9 7 2.4274 1.4116 4.8525 10 14 3.3584 -0.7870 6.2581 11 1 3.6269 -2.2010 5.8925 12 1 4.6118 -0.1535 6.7410 13 1 2.3343 -0.7399 7.3323 14 6 2.0323 -0.7104 -1.2304 15 6 2.0714 -2.0923 -1.2615 16 6 2.5268 -2.7466 -2.3895 17 6 2.9549 -2.0149 -3.4893 18 7 3.4211 -2.6747 -4.6322 19 6 3.5161 -4.1330 -4.7990 20 6 4.0801 -4.3035 -6.2228 21 8 4.2508 -2.9378 -6.7005 22 6 3.8589 -2.0808 -5.7508 23 8 3.8962 -0.8743 -5.8899 24 6 2.9195 -0.6272 -3.4529 25 6 2.4582 0.0210 -2.3239 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 2.9173 -1.1205 1.0288 30 1 2.7589 1.0462 2.1182 31 1 1.0871 0.6164 2.5525 32 1 2.5287 1.8737 5.6993 33 1 1.7417 -2.6608 -0.4044 34 1 2.5535 -3.8260 -2.4146 35 1 4.1965 -4.5592 -4.0618 36 1 2.5305 -4.5922 -4.7222 37 1 3.3755 -4.8442 -6.8547 38 1 5.0393 -4.8205 -6.1926 39 1 3.2514 -0.0554 -4.3069 40 1 2.4300 1.1002 -2.2951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839542334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:24 Heat of formation + Delta-G solvation = -58.654028 kcal Electronic energy + Delta-G solvation = -22315.412997 eV Core-core repulsion = 18901.599174 eV Total energy + Delta-G solvation = -3413.813823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.96858 -40.53590 -38.62285 -37.89787 -36.25139 -34.74931 -32.27163 -31.98508 -30.88995 -29.40265 -28.08722 -25.39862 -25.19973 -23.94517 -22.83658 -22.35102 -21.19745 -19.20746 -18.70861 -18.50034 -18.01489 -17.19871 -16.83133 -16.34631 -16.12340 -15.77896 -15.21260 -15.19133 -15.05012 -14.88164 -14.79095 -14.42087 -14.27593 -13.97876 -13.47207 -13.37500 -13.23258 -13.02728 -12.86624 -12.68413 -12.49273 -12.36710 -12.02646 -11.84625 -11.65942 -11.37454 -11.24391 -11.08477 -10.65369 -9.92927 -9.13945 -8.96257 -8.20960 -6.31903 0.19219 0.42315 1.17431 1.42664 1.43227 1.51399 1.57149 2.41394 2.42528 2.80123 3.12811 3.22833 3.46774 3.53768 3.80938 3.93795 4.01591 4.13648 4.33785 4.38722 4.46562 4.55533 4.57614 4.61959 4.69380 4.75562 4.88655 4.99010 5.09404 5.17972 5.21676 5.33032 5.35169 5.37109 5.46206 5.60595 5.74198 5.99795 6.05635 6.20474 6.46649 6.72226 6.73438 6.91175 7.39092 8.91028 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027970 B = 0.002917 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.820751 B = 9598.006111 C =10033.544272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.120 3.880 3 H 0.025 0.975 4 N -0.672 5.672 5 C 0.209 3.791 6 C -0.532 4.532 7 H 0.068 0.932 8 C -0.001 4.001 9 N -0.936 5.936 10 Si 0.974 3.026 11 H -0.259 1.259 12 H -0.280 1.280 13 H -0.279 1.279 14 C -0.107 4.107 15 C -0.072 4.072 16 C -0.136 4.136 17 C 0.167 3.833 18 N -0.567 5.567 19 C 0.051 3.949 20 C 0.038 3.962 21 O -0.337 6.337 22 C 0.637 3.363 23 O -0.553 6.553 24 C -0.169 4.169 25 C -0.092 4.092 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.334 0.666 30 H -0.045 1.045 31 H 0.003 0.997 32 H 0.264 0.736 33 H 0.143 0.857 34 H 0.164 0.836 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 -16.627 -21.592 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.010 3.990 3 H 0.043 0.957 4 N -0.303 5.303 5 C 0.081 3.919 6 C -0.570 4.570 7 H 0.086 0.914 8 C -0.199 4.199 9 N -0.577 5.577 10 Si 0.798 3.202 11 H -0.183 1.183 12 H -0.206 1.206 13 H -0.205 1.205 14 C -0.108 4.108 15 C -0.091 4.091 16 C -0.156 4.156 17 C 0.075 3.925 18 N -0.303 5.303 19 C -0.070 4.070 20 C -0.035 4.035 21 O -0.247 6.247 22 C 0.393 3.607 23 O -0.441 6.441 24 C -0.189 4.189 25 C -0.111 4.111 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.152 0.848 30 H -0.027 1.027 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.160 0.840 34 H 0.182 0.818 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.687 -16.145 -21.697 27.053 hybrid contribution 0.988 1.022 0.770 1.616 sum 1.675 -15.123 -20.927 25.874 Atomic orbital electron populations 1.21677 0.93309 1.02411 1.00731 1.20426 0.96537 0.94432 0.87614 0.95704 1.60733 1.32593 1.33499 1.03473 1.19239 0.94045 0.89973 0.88607 1.21586 1.43318 0.97139 0.94942 0.91393 1.25982 0.95694 0.95752 1.02499 1.70113 1.49894 1.10805 1.26859 0.85265 0.77717 0.78991 0.78196 1.18291 1.20584 1.20482 1.19959 1.01026 0.94877 0.94936 1.21008 0.96929 0.93234 0.97923 1.20934 1.02502 1.01094 0.91115 1.17471 0.98393 0.91087 0.85593 1.45454 1.62432 1.09437 1.13013 1.23475 1.06659 0.77799 0.99041 1.24895 1.06591 0.78782 0.93246 1.87300 1.78791 1.20322 1.38309 1.18678 0.76656 0.85634 0.79723 1.90916 1.60127 1.11769 1.81262 1.21443 1.03798 0.93608 1.00077 1.20979 0.97673 1.00230 0.92267 0.94382 0.91376 0.91509 0.84809 1.02725 0.97841 0.92706 0.83971 0.81836 0.85759 0.85463 0.84163 0.84405 0.84443 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 9.39 71.98 0.68 -3.42 16 2 C 0.12 4.35 2.82 44.17 0.12 4.47 16 3 H 0.02 0.99 7.66 -2.38 -0.02 0.98 16 4 N -0.67 -28.56 5.67 -499.46 -2.83 -31.39 16 5 C 0.21 11.28 5.24 85.56 0.45 11.72 16 6 C -0.53 -30.22 9.32 25.60 0.24 -29.98 16 7 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 8 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 9 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 10 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 11 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 14 C -0.11 -3.24 4.72 -19.85 -0.09 -3.33 16 15 C -0.07 -1.85 8.99 22.25 0.20 -1.65 16 16 C -0.14 -2.74 9.49 22.39 0.21 -2.52 16 17 C 0.17 3.96 6.63 38.14 0.25 4.21 16 18 N -0.57 -10.75 3.16 -759.80 -2.40 -13.16 16 19 C 0.05 0.30 6.49 86.63 0.56 0.86 16 20 C 0.04 0.16 8.23 72.35 0.60 0.75 16 21 O -0.34 -6.10 11.09 -47.46 -0.53 -6.63 16 22 C 0.64 15.72 8.77 129.91 1.14 16.86 16 23 O -0.55 -18.65 14.74 19.66 0.29 -18.36 16 24 C -0.17 -4.91 9.31 22.39 0.21 -4.70 16 25 C -0.09 -2.74 9.66 22.25 0.21 -2.53 16 26 H 0.04 1.41 7.45 -2.38 -0.02 1.39 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.33 13.66 7.97 -89.69 -0.71 12.95 16 30 H -0.04 -2.65 8.06 -2.39 -0.02 -2.67 16 31 H 0.00 0.20 7.44 -2.39 -0.02 0.19 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.14 3.61 7.70 -2.91 -0.02 3.59 16 34 H 0.16 1.92 7.31 -2.91 -0.02 1.90 16 35 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.14 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.14 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.14 4.46 5.24 -2.91 -0.02 4.45 16 40 H 0.13 3.58 8.03 -2.91 -0.02 3.56 16 Total: -1.00 -77.06 335.16 2.42 -74.64 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.34 Total: 14.41 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: 5.24 Total: -8.87 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -4.95 Total: -101.36 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.24 Total: -24.99 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -77.06 2.42 -74.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839542334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.983 kcal (2) G-P(sol) polarization free energy of solvation -77.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds