Wall clock time and date at job start Tue Mar 31 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 5 5 C 1.46901 * 110.99793 * 85.00144 * 4 2 1 6 6 C 1.50701 * 109.46921 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 C 1.50701 * 109.47458 * 120.00104 * 2 1 3 15 15 C 1.38281 * 119.92983 * 79.71900 * 14 2 1 16 16 C 1.38112 * 120.06731 * 179.76927 * 15 14 2 17 17 C 1.38870 * 119.93045 * 0.49086 * 16 15 14 18 18 N 1.39949 * 120.06773 * 179.78793 * 17 16 15 19 19 C 1.47091 * 125.56097 * 359.69841 * 18 17 16 20 20 C 1.54094 * 103.78012 * 179.86953 * 19 18 17 21 21 O 1.45706 * 104.00637 * 0.37338 * 20 19 18 22 22 C 1.33782 * 109.47532 * 359.75068 * 21 20 19 23 23 O 1.21511 * 123.07094 * 179.97438 * 22 21 20 24 24 C 1.38861 * 119.86086 * 359.76648 * 17 16 15 25 25 C 1.38123 * 119.92780 * 0.02562 * 24 17 16 26 26 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 27 27 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 29 29 H 1.00899 * 110.99995 * 321.04542 * 4 2 1 30 30 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 31 31 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 32 32 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 33 33 H 1.08000 * 119.96697 * 0.02562 * 15 14 2 34 34 H 1.08003 * 120.03509 * 180.28248 * 16 15 14 35 35 H 1.08995 * 110.56655 * 298.57145 * 19 18 17 36 36 H 1.08999 * 110.56731 * 61.42437 * 19 18 17 37 37 H 1.09005 * 110.73273 * 241.64373 * 20 19 18 38 38 H 1.08994 * 110.43356 * 118.96069 * 20 19 18 39 39 H 1.07994 * 120.03455 * 179.97438 * 24 17 16 40 40 H 1.07999 * 119.96101 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5884 -0.5216 -3.5558 7 1 2.8379 -1.5695 -3.4794 8 6 2.7318 0.1353 -4.7595 9 7 2.4274 1.4113 -4.8526 10 14 3.3583 -0.7872 -6.2581 11 1 2.4370 -1.9096 -6.5694 12 1 3.4219 0.1379 -7.4180 13 1 4.7146 -1.3233 -5.9781 14 6 2.0324 -0.7104 1.2304 15 6 2.0607 -2.0925 1.2659 16 6 2.5251 -2.7464 2.3903 17 6 2.9542 -2.0147 3.4898 18 7 3.4211 -2.6744 4.6322 19 6 3.5046 -4.1329 4.8038 20 6 4.0816 -4.3032 6.2224 21 8 4.2524 -2.9373 6.7000 22 6 3.8599 -2.0805 5.7505 23 8 3.8972 -0.8739 5.8896 24 6 2.9195 -0.6270 3.4530 25 6 2.4580 0.0211 2.3239 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.4495 -1.4980 -1.4100 30 1 2.7588 1.0462 -2.1183 31 1 1.0870 0.6163 -2.5525 32 1 2.5286 1.8735 -5.6994 33 1 1.7233 -2.6611 0.4119 34 1 2.5513 -3.8258 2.4157 35 1 2.5147 -4.5838 4.7343 36 1 4.1771 -4.5676 4.0643 37 1 5.0413 -4.8192 6.1892 38 1 3.3795 -4.8447 6.8563 39 1 3.2521 -0.0551 4.3066 40 1 2.4311 1.1004 2.2946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839542335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:27 Heat of formation + Delta-G solvation = -35.834855 kcal Electronic energy + Delta-G solvation = -22306.178412 eV Core-core repulsion = 18893.354103 eV Total energy + Delta-G solvation = -3412.824309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.15520 -39.37549 -37.62207 -36.66911 -35.09181 -32.80580 -30.96920 -30.87869 -29.84731 -28.25181 -25.99838 -24.59467 -24.16721 -22.30590 -21.78704 -21.21084 -20.08017 -18.30523 -17.81310 -17.20131 -16.70697 -15.75945 -15.46032 -14.99979 -14.62667 -14.56940 -14.38574 -14.26985 -14.04753 -13.72370 -13.49658 -13.21508 -12.85928 -12.72778 -12.55135 -12.16748 -11.85591 -11.43929 -11.34786 -11.26091 -11.13891 -10.77314 -10.69520 -10.50179 -10.31860 -10.20246 -9.86895 -9.20821 -8.79208 -8.49335 -7.85839 -7.30237 -6.03614 -4.05634 1.35405 1.57823 2.00247 2.49355 3.00205 3.32808 3.37043 3.39798 3.62454 3.93425 4.19834 4.21856 4.42459 4.72091 4.82815 4.95951 4.97871 5.07671 5.23760 5.32212 5.41043 5.46501 5.58179 5.66916 5.76515 5.78550 6.10912 6.15077 6.31785 6.38155 6.39883 6.49376 6.62117 6.94571 7.03529 7.16973 7.25767 7.42399 7.67689 7.77469 8.12197 8.37341 8.59325 9.03141 9.59137 11.07395 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027883 B = 0.002914 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.955328 B = 9605.476939 C =10035.899236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.117 3.883 3 H 0.081 0.919 4 N -0.681 5.681 5 C 0.195 3.805 6 C -0.515 4.515 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.068 4.068 15 C -0.069 4.069 16 C -0.153 4.153 17 C 0.158 3.842 18 N -0.566 5.566 19 C 0.059 3.941 20 C 0.042 3.958 21 O -0.324 6.324 22 C 0.642 3.358 23 O -0.503 6.503 24 C -0.151 4.151 25 C -0.090 4.090 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.328 0.672 30 H 0.028 0.972 31 H -0.011 1.011 32 H 0.262 0.738 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.152 0.848 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.934 -12.937 20.536 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.006 3.994 3 H 0.099 0.901 4 N -0.310 5.310 5 C 0.069 3.931 6 C -0.554 4.554 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.069 4.069 15 C -0.088 4.088 16 C -0.174 4.174 17 C 0.067 3.933 18 N -0.303 5.303 19 C -0.064 4.064 20 C -0.033 4.033 21 O -0.234 6.234 22 C 0.397 3.603 23 O -0.387 6.387 24 C -0.171 4.171 25 C -0.109 4.109 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.046 0.954 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.169 0.831 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.120 -12.045 20.921 24.141 hybrid contribution -0.572 -0.575 -1.216 1.462 sum -0.692 -12.619 19.705 23.410 Atomic orbital electron populations 1.22465 0.97080 1.01739 1.01922 1.20452 0.92060 0.97578 0.89347 0.90075 1.60789 1.55214 1.10461 1.04578 1.19580 0.95347 0.91787 0.86436 1.21142 1.43709 0.96903 0.93611 0.92053 1.24982 0.95631 0.94927 0.98996 1.69949 1.48746 1.08995 1.26027 0.86550 0.79470 0.79408 0.81887 1.20290 1.21359 1.20167 1.20064 0.98037 0.93786 0.95043 1.20736 0.97578 0.94131 0.96385 1.20625 1.04630 0.99136 0.92988 1.17332 0.99828 0.91526 0.84586 1.45327 1.63595 1.06995 1.14419 1.22958 1.04224 0.81331 0.97875 1.24350 1.03954 0.81443 0.93554 1.87321 1.79339 1.17943 1.38830 1.18454 0.77047 0.85816 0.78997 1.90959 1.58255 1.09314 1.80137 1.21454 1.02778 0.92232 1.00637 1.20945 0.97810 0.99995 0.92160 0.91948 0.92808 0.92875 0.85472 0.95416 0.99359 0.92844 0.85273 0.86143 0.88152 0.88063 0.87142 0.87228 0.83095 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 9.14 37.16 0.34 -2.30 16 2 C 0.12 2.02 2.78 -68.86 -0.19 1.83 16 3 H 0.08 1.49 7.66 -51.93 -0.40 1.09 16 4 N -0.68 -14.08 5.70 -109.21 -0.62 -14.70 16 5 C 0.19 5.01 5.24 -4.97 -0.03 4.98 16 6 C -0.52 -14.43 9.32 -34.44 -0.32 -14.75 16 7 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 10 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 C -0.07 -1.06 4.96 -104.59 -0.52 -1.57 16 15 C -0.07 -0.98 9.31 -39.61 -0.37 -1.35 16 16 C -0.15 -1.86 9.49 -39.39 -0.37 -2.24 16 17 C 0.16 2.10 6.63 -83.69 -0.56 1.54 16 18 N -0.57 -6.27 3.16 -118.27 -0.37 -6.64 16 19 C 0.06 0.33 6.49 -3.15 -0.02 0.31 16 20 C 0.04 0.18 8.23 37.73 0.31 0.49 16 21 O -0.32 -3.32 11.09 -37.86 -0.42 -3.74 16 22 C 0.64 8.38 8.77 53.71 0.47 8.85 16 23 O -0.50 -8.36 14.75 -19.12 -0.28 -8.64 16 24 C -0.15 -2.24 9.31 -39.39 -0.37 -2.61 16 25 C -0.09 -1.34 9.66 -39.61 -0.38 -1.72 16 26 H 0.06 1.04 7.45 -51.93 -0.39 0.65 16 27 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.33 6.38 7.81 -39.29 -0.31 6.07 16 30 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 31 H -0.01 -0.31 7.44 -51.93 -0.39 -0.69 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.13 1.74 7.25 -52.49 -0.38 1.36 16 34 H 0.12 1.09 7.31 -52.48 -0.38 0.71 16 35 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.15 2.38 5.24 -52.49 -0.28 2.11 16 40 H 0.13 1.70 8.03 -52.49 -0.42 1.28 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -33.98 334.83 -8.47 -42.46 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.44 Total: 2.70 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -2.10 Total: -7.04 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.26 Total: -47.33 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.70 Total: -12.38 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.98 -8.47 -42.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839542335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.621 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds