Wall clock time and date at job start Tue Mar 31 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47255 * 2 1 4 4 C 1.50701 * 109.47138 * 239.99397 * 2 1 3 5 5 O 1.21278 * 120.00429 * 240.00536 * 4 2 1 6 6 N 1.34781 * 119.99396 * 60.00618 * 4 2 1 7 7 C 1.47419 * 125.65221 * 359.97078 * 6 4 2 8 8 C 1.54905 * 104.92834 * 155.83963 * 7 6 4 9 9 C 1.55448 * 101.45165 * 37.00468 * 8 7 6 10 10 O 1.42902 * 110.70640 * 82.89214 * 9 8 7 11 11 C 1.50698 * 110.86030 * 206.07558 * 9 8 7 12 12 H 1.07996 * 120.00126 * 113.63776 * 11 9 8 13 13 C 1.37881 * 120.00057 * 293.63338 * 11 9 8 14 14 N 1.31514 * 119.99965 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 120.00215 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46687 * 90.00348 * 15 13 11 17 17 H 1.48493 * 109.47151 * 210.00465 * 15 13 11 18 18 H 1.48499 * 109.46813 * 330.00673 * 15 13 11 19 19 C 1.47026 * 125.64203 * 180.02562 * 6 4 2 20 20 C 1.50702 * 109.46457 * 119.99811 * 2 1 3 21 21 C 1.38221 * 119.62203 * 34.99987 * 20 2 1 22 22 C 1.38632 * 119.16635 * 179.97438 * 21 20 2 23 23 C 1.38675 * 118.41558 * 359.97438 * 22 21 20 24 24 C 1.38184 * 119.16380 * 359.97438 * 23 22 21 25 25 N 1.31859 * 119.61478 * 214.71987 * 20 2 1 26 26 H 1.08999 * 109.47233 * 300.00823 * 1 2 3 27 27 H 1.09006 * 109.46266 * 60.00040 * 1 2 3 28 28 H 1.08991 * 109.47255 * 180.02562 * 1 2 3 29 29 H 1.09002 * 110.36926 * 274.73432 * 7 6 4 30 30 H 1.08995 * 110.36556 * 36.94716 * 7 6 4 31 31 H 1.09002 * 111.00852 * 155.13877 * 8 7 6 32 32 H 1.09004 * 111.00578 * 278.99532 * 8 7 6 33 33 H 0.96694 * 113.99935 * 66.45116 * 10 9 8 34 34 H 0.97001 * 120.00287 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.88266 * 300.45023 * 19 6 4 36 36 H 1.08997 * 109.88244 * 61.46381 * 19 6 4 37 37 H 1.08004 * 120.41809 * 359.95697 * 21 20 2 38 38 H 1.07996 * 120.79439 * 180.02562 * 22 21 20 39 39 H 1.07999 * 120.41775 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.61540 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 0.8707 0.9316 -2.7337 8 6 1.2941 1.3944 -4.1501 9 6 1.5394 0.0330 -4.8591 10 8 0.3101 -0.5159 -5.3383 11 6 2.5282 0.1854 -5.9861 12 1 3.4949 -0.2921 -5.9246 13 6 2.1986 0.9344 -7.0958 14 7 1.0216 1.5163 -7.1706 15 14 3.4245 1.1240 -8.4925 16 1 3.2246 0.0314 -9.4782 17 1 3.2177 2.4352 -9.1582 18 1 4.8058 1.0559 -7.9514 19 6 2.1259 -0.8437 -3.7326 20 6 2.0322 -0.7104 1.2305 21 6 1.3319 -1.7933 1.7279 22 6 1.8026 -2.4401 2.8601 23 6 2.9659 -1.9717 3.4521 24 6 3.6128 -0.8838 2.8975 25 7 3.1378 -0.2951 1.8171 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.1850 0.6605 -2.7229 30 1 1.0675 1.7166 -2.0035 31 1 0.4922 1.9510 -4.6353 32 1 2.2093 1.9851 -4.1108 33 1 -0.0999 -0.0022 -6.0475 34 1 0.7895 2.0429 -7.9514 35 1 3.2139 -0.8524 -3.7983 36 1 1.7417 -1.8606 -3.8127 37 1 0.4291 -2.1311 1.2407 38 1 1.2765 -3.2891 3.2708 39 1 3.3617 -2.4515 4.3350 40 1 4.5191 -0.5127 3.3528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:35 Heat of formation + Delta-G solvation = -47.252044 kcal Electronic energy + Delta-G solvation = -23296.167016 eV Core-core repulsion = 19882.847620 eV Total energy + Delta-G solvation = -3413.319395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57896 -39.29611 -37.26295 -34.55837 -34.08029 -32.48994 -32.16692 -30.21711 -29.35559 -28.19292 -25.58717 -24.83066 -23.40639 -22.78416 -21.49150 -19.77659 -18.81718 -17.35011 -16.92176 -16.71522 -16.17292 -15.63127 -15.18520 -14.98390 -14.83009 -14.23031 -14.00077 -13.76759 -13.34484 -13.10255 -12.97376 -12.81665 -12.39340 -12.03260 -11.88446 -11.73006 -11.58846 -11.35477 -11.27105 -11.18532 -10.84383 -10.62170 -10.49464 -10.13932 -9.91538 -9.47268 -9.44265 -9.35086 -8.94854 -8.67664 -8.23226 -8.02135 -6.31686 -4.38632 1.07790 1.27704 3.04390 3.19599 3.26864 3.30282 3.41357 3.88989 4.17931 4.25997 4.59945 4.77918 4.88450 4.97949 4.99849 5.09744 5.11853 5.22100 5.46520 5.54600 5.62797 5.71968 5.74161 5.81573 5.89227 5.93407 6.05779 6.13121 6.15686 6.25426 6.43733 6.65600 6.68961 6.88739 6.95339 7.27699 7.31860 7.71770 7.98479 7.99821 8.09249 8.59762 8.64684 9.29703 9.43212 10.76162 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.003626 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.354675 B = 7719.986828 C = 8007.917894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.060 4.060 3 H 0.113 0.887 4 C 0.533 3.467 5 O -0.548 6.548 6 N -0.605 5.605 7 C 0.094 3.906 8 C -0.138 4.138 9 C 0.249 3.751 10 O -0.587 6.587 11 C -0.535 4.535 12 H 0.065 0.935 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.904 3.096 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.123 3.877 20 C 0.162 3.838 21 C -0.155 4.155 22 C -0.076 4.076 23 C -0.180 4.180 24 C 0.100 3.900 25 N -0.478 5.478 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.386 0.614 34 H 0.269 0.731 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -0.971 16.647 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.082 4.082 3 H 0.131 0.869 4 C 0.320 3.680 5 O -0.427 6.427 6 N -0.338 5.338 7 C -0.029 4.029 8 C -0.177 4.177 9 C 0.208 3.792 10 O -0.397 6.397 11 C -0.573 4.573 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.731 3.269 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C 0.001 3.999 20 C 0.024 3.976 21 C -0.175 4.175 22 C -0.102 4.102 23 C -0.200 4.200 24 C -0.057 4.057 25 N -0.187 5.187 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.238 0.762 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.761 -1.145 16.755 16.886 hybrid contribution 0.118 -0.104 -0.844 0.859 sum -1.642 -1.248 15.910 16.043 Atomic orbital electron populations 1.22012 0.91811 1.03312 1.03781 1.20139 0.97483 1.00948 0.89675 0.86909 1.19782 0.80634 0.84484 0.83101 1.90678 1.38848 1.26897 1.86267 1.48564 1.50278 1.29521 1.05417 1.22590 0.94427 0.86611 0.99225 1.23380 1.01810 1.00670 0.91809 1.19482 0.83484 0.86644 0.89567 1.86093 1.39155 1.56253 1.58217 1.21555 1.01360 1.31834 1.02566 0.91708 1.24985 0.95677 0.94056 0.98281 1.69568 1.20583 1.33478 1.30171 0.86398 0.81336 0.77534 0.81638 1.20374 1.21017 1.19697 1.22086 0.99196 0.97454 0.81118 1.20531 0.90314 0.92737 0.94055 1.21935 1.01906 0.96521 0.97135 1.21539 0.95475 0.98476 0.94684 1.22092 0.97108 0.98851 1.01980 1.22686 0.98804 0.92638 0.91593 1.67404 1.11442 1.31033 1.08775 0.91338 0.90083 0.91679 0.91554 0.91997 0.89581 0.91406 0.76185 0.92088 0.91095 0.92097 0.84755 0.84935 0.84998 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.43 37.16 0.31 -1.45 16 2 C -0.06 -0.90 2.39 -92.92 -0.22 -1.12 16 3 H 0.11 1.60 7.85 -51.93 -0.41 1.19 16 4 C 0.53 10.24 7.21 -10.98 -0.08 10.16 16 5 O -0.55 -12.46 16.36 5.56 0.09 -12.37 16 6 N -0.61 -11.94 3.32 -170.53 -0.57 -12.50 16 7 C 0.09 1.64 5.12 -2.53 -0.01 1.63 16 8 C -0.14 -2.90 5.70 -24.43 -0.14 -3.04 16 9 C 0.25 5.94 0.86 -89.78 -0.08 5.86 16 10 O -0.59 -14.58 13.09 -35.23 -0.46 -15.04 16 11 C -0.53 -13.93 8.22 -34.44 -0.28 -14.21 16 12 H 0.06 1.70 7.53 -52.49 -0.40 1.31 16 13 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 14 N -0.90 -22.74 10.71 55.43 0.59 -22.15 16 15 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 C 0.12 2.79 6.22 -3.06 -0.02 2.77 16 20 C 0.16 2.44 5.03 -82.59 -0.42 2.03 16 21 C -0.16 -2.02 9.18 -39.44 -0.36 -2.38 16 22 C -0.08 -0.82 10.18 -39.27 -0.40 -1.22 16 23 C -0.18 -1.87 10.11 -39.44 -0.40 -2.27 16 24 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 25 N -0.48 -7.39 10.27 -9.47 -0.10 -7.48 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.94 4.99 -51.93 -0.26 0.68 16 28 H 0.06 0.74 6.49 -51.93 -0.34 0.40 16 29 H 0.07 1.10 7.07 -51.93 -0.37 0.73 16 30 H 0.06 0.90 7.35 -51.93 -0.38 0.52 16 31 H 0.09 1.86 7.79 -51.93 -0.40 1.46 16 32 H 0.07 1.47 8.05 -51.93 -0.42 1.05 16 33 H 0.39 9.67 6.98 45.56 0.32 9.99 16 34 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 35 H 0.07 1.66 7.63 -51.93 -0.40 1.26 16 36 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 37 H 0.13 1.54 6.31 -52.48 -0.33 1.21 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -30.46 326.46 -7.55 -38.01 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -4.63 Total: 11.96 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.39 Total: -0.48 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: -0.07 Total: -42.13 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.37 Total: -27.41 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.46 -7.55 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.242 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds