Wall clock time and date at job start Tue Mar 31 2020 06:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47255 * 2 1 4 4 C 1.50701 * 109.47138 * 239.99397 * 2 1 3 5 5 O 1.21278 * 120.00429 * 240.00536 * 4 2 1 6 6 N 1.34781 * 119.99396 * 60.00618 * 4 2 1 7 7 C 1.47419 * 125.65221 * 359.97078 * 6 4 2 8 8 C 1.54905 * 104.92834 * 155.83963 * 7 6 4 9 9 C 1.55448 * 101.45165 * 37.00468 * 8 7 6 10 10 O 1.42902 * 110.70640 * 82.89214 * 9 8 7 11 11 C 1.50698 * 110.86030 * 206.07558 * 9 8 7 12 12 H 1.07996 * 120.00126 * 113.63776 * 11 9 8 13 13 C 1.37881 * 120.00057 * 293.63338 * 11 9 8 14 14 N 1.31514 * 119.99965 * 0.02562 * 13 11 9 15 15 Si 1.86804 * 120.00215 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46687 * 90.00348 * 15 13 11 17 17 H 1.48493 * 109.47151 * 210.00465 * 15 13 11 18 18 H 1.48499 * 109.46813 * 330.00673 * 15 13 11 19 19 C 1.47026 * 125.64203 * 180.02562 * 6 4 2 20 20 C 1.50702 * 109.46457 * 119.99811 * 2 1 3 21 21 C 1.38221 * 119.62203 * 34.99987 * 20 2 1 22 22 C 1.38632 * 119.16635 * 179.97438 * 21 20 2 23 23 C 1.38675 * 118.41558 * 359.97438 * 22 21 20 24 24 C 1.38184 * 119.16380 * 359.97438 * 23 22 21 25 25 N 1.31859 * 119.61478 * 214.71987 * 20 2 1 26 26 H 1.08999 * 109.47233 * 300.00823 * 1 2 3 27 27 H 1.09006 * 109.46266 * 60.00040 * 1 2 3 28 28 H 1.08991 * 109.47255 * 180.02562 * 1 2 3 29 29 H 1.09002 * 110.36926 * 274.73432 * 7 6 4 30 30 H 1.08995 * 110.36556 * 36.94716 * 7 6 4 31 31 H 1.09002 * 111.00852 * 155.13877 * 8 7 6 32 32 H 1.09004 * 111.00578 * 278.99532 * 8 7 6 33 33 H 0.96694 * 113.99935 * 66.45116 * 10 9 8 34 34 H 0.97001 * 120.00287 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.88266 * 300.45023 * 19 6 4 36 36 H 1.08997 * 109.88244 * 61.46381 * 19 6 4 37 37 H 1.08004 * 120.41809 * 359.95697 * 21 20 2 38 38 H 1.07996 * 120.79439 * 180.02562 * 22 21 20 39 39 H 1.07999 * 120.41775 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.61540 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 0.8707 0.9316 -2.7337 8 6 1.2941 1.3944 -4.1501 9 6 1.5394 0.0330 -4.8591 10 8 0.3101 -0.5159 -5.3383 11 6 2.5282 0.1854 -5.9861 12 1 3.4949 -0.2921 -5.9246 13 6 2.1986 0.9344 -7.0958 14 7 1.0216 1.5163 -7.1706 15 14 3.4245 1.1240 -8.4925 16 1 3.2246 0.0314 -9.4782 17 1 3.2177 2.4352 -9.1582 18 1 4.8058 1.0559 -7.9514 19 6 2.1259 -0.8437 -3.7326 20 6 2.0322 -0.7104 1.2305 21 6 1.3319 -1.7933 1.7279 22 6 1.8026 -2.4401 2.8601 23 6 2.9659 -1.9717 3.4521 24 6 3.6128 -0.8838 2.8975 25 7 3.1378 -0.2951 1.8171 26 1 -0.3634 0.5140 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.1850 0.6605 -2.7229 30 1 1.0675 1.7166 -2.0035 31 1 0.4922 1.9510 -4.6353 32 1 2.2093 1.9851 -4.1108 33 1 -0.0999 -0.0022 -6.0475 34 1 0.7895 2.0429 -7.9514 35 1 3.2139 -0.8524 -3.7983 36 1 1.7417 -1.8606 -3.8127 37 1 0.4291 -2.1311 1.2407 38 1 1.2765 -3.2891 3.2708 39 1 3.3617 -2.4515 4.3350 40 1 4.5191 -0.5127 3.3528 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:34 Heat of formation + Delta-G solvation = -68.561144 kcal Electronic energy + Delta-G solvation = -23297.091048 eV Core-core repulsion = 19882.847620 eV Total energy + Delta-G solvation = -3414.243427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73909 -40.64881 -38.95712 -36.22172 -35.32918 -34.15042 -33.39211 -31.63792 -30.68234 -29.82824 -27.20249 -26.12645 -24.35699 -24.14384 -22.76887 -21.52316 -20.29852 -19.22181 -18.15042 -17.87000 -17.29935 -16.97682 -16.84124 -16.63346 -16.03356 -15.95703 -15.31692 -14.93073 -14.68292 -14.52221 -14.19961 -13.89408 -13.88576 -13.47638 -13.42855 -13.25002 -13.18312 -12.90824 -12.66361 -12.43327 -12.35808 -12.33593 -12.22202 -11.98006 -11.29409 -10.96238 -10.75300 -10.62427 -10.38774 -10.14041 -9.91022 -9.65632 -8.26802 -6.40590 0.15540 0.39646 1.40807 1.43942 1.52563 1.55523 1.97269 2.38884 2.87800 2.98622 3.19970 3.51986 3.73484 3.89041 3.97938 4.01473 4.09509 4.16350 4.25553 4.28794 4.31735 4.39307 4.55409 4.62104 4.69415 4.76675 4.84978 4.88300 4.92218 5.14676 5.19268 5.22241 5.26115 5.31046 5.45504 5.51314 5.75523 5.80841 6.04958 6.54611 6.63263 7.06241 7.07664 7.30326 7.44965 8.79585 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.003626 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.354675 B = 7719.986828 C = 8007.917894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 H 0.119 0.881 4 C 0.529 3.471 5 O -0.590 6.590 6 N -0.607 5.607 7 C 0.103 3.897 8 C -0.130 4.130 9 C 0.238 3.762 10 O -0.593 6.593 11 C -0.566 4.566 12 H 0.049 0.951 13 C 0.039 3.961 14 N -0.905 5.905 15 Si 0.959 3.041 16 H -0.277 1.277 17 H -0.275 1.275 18 H -0.276 1.276 19 C 0.129 3.871 20 C 0.131 3.869 21 C -0.168 4.168 22 C -0.078 4.078 23 C -0.171 4.171 24 C 0.082 3.918 25 N -0.514 5.514 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.383 0.617 34 H 0.274 0.726 35 H 0.053 0.947 36 H 0.043 0.957 37 H 0.144 0.856 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 -0.590 18.488 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 H 0.137 0.863 4 C 0.319 3.681 5 O -0.471 6.471 6 N -0.339 5.339 7 C -0.019 4.019 8 C -0.169 4.169 9 C 0.198 3.802 10 O -0.403 6.403 11 C -0.604 4.604 12 H 0.068 0.932 13 C -0.163 4.163 14 N -0.545 5.545 15 Si 0.784 3.216 16 H -0.203 1.203 17 H -0.200 1.200 18 H -0.201 1.201 19 C 0.006 3.994 20 C -0.007 4.007 21 C -0.188 4.188 22 C -0.104 4.104 23 C -0.190 4.190 24 C -0.075 4.075 25 N -0.224 5.224 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.235 0.765 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.161 0.839 38 H 0.183 0.817 39 H 0.187 0.813 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.466 -0.742 18.607 18.784 hybrid contribution 0.380 -0.292 -1.368 1.449 sum -2.085 -1.034 17.239 17.395 Atomic orbital electron populations 1.22019 0.89242 1.03843 1.05147 1.20131 0.99431 1.00342 0.87331 0.86312 1.20692 0.79559 0.84037 0.83851 1.90642 1.40634 1.28953 1.86876 1.48622 1.50617 1.29994 1.04712 1.22660 0.94769 0.86592 0.97831 1.23175 1.01163 0.98780 0.93746 1.19591 0.82774 0.88350 0.89495 1.86076 1.39467 1.56634 1.58129 1.21757 1.01499 1.32839 1.04298 0.93239 1.25564 0.97216 0.93631 0.99844 1.69612 1.21119 1.33098 1.30643 0.85548 0.79218 0.77713 0.79074 1.20316 1.19971 1.20133 1.21783 0.97985 0.96733 0.82865 1.20624 0.91226 0.94187 0.94640 1.22162 1.02332 0.96227 0.98065 1.22004 0.95665 0.98919 0.93806 1.22518 0.96341 0.97695 1.02473 1.23222 0.99794 0.93352 0.91129 1.67347 1.12086 1.32589 1.10339 0.88665 0.89873 0.91620 0.89905 0.88290 0.90112 0.92465 0.76532 0.91668 0.92893 0.93829 0.83867 0.81684 0.81331 0.80606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.43 71.98 0.61 -2.44 16 2 C -0.05 -1.45 2.39 -12.28 -0.03 -1.48 16 3 H 0.12 3.20 7.85 -2.39 -0.02 3.18 16 4 C 0.53 20.36 7.21 87.66 0.63 20.99 16 5 O -0.59 -27.46 16.36 -3.02 -0.05 -27.51 16 6 N -0.61 -23.99 3.32 -811.82 -2.70 -26.69 16 7 C 0.10 3.45 5.12 86.85 0.44 3.89 16 8 C -0.13 -5.45 5.70 32.09 0.18 -5.26 16 9 C 0.24 11.60 0.86 -10.25 -0.01 11.59 16 10 O -0.59 -29.91 13.09 -148.98 -1.95 -31.86 16 11 C -0.57 -30.23 8.22 25.60 0.21 -30.02 16 12 H 0.05 2.71 7.53 -2.91 -0.02 2.69 16 13 C 0.04 1.99 5.28 84.66 0.45 2.43 16 14 N -0.91 -45.68 10.71 21.45 0.23 -45.45 16 15 Si 0.96 41.44 29.54 68.60 2.03 43.47 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 19 C 0.13 6.08 6.22 86.73 0.54 6.62 16 20 C 0.13 3.82 5.03 42.55 0.21 4.04 16 21 C -0.17 -4.10 9.18 22.36 0.21 -3.90 16 22 C -0.08 -1.48 10.18 22.47 0.23 -1.25 16 23 C -0.17 -3.04 10.11 22.36 0.23 -2.81 16 24 C 0.08 1.86 11.18 84.67 0.95 2.81 16 25 N -0.51 -15.51 10.27 -183.88 -1.89 -17.40 16 26 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 1.69 4.99 -2.38 -0.01 1.68 16 28 H 0.06 1.37 6.49 -2.39 -0.02 1.35 16 29 H 0.08 2.55 7.07 -2.39 -0.02 2.53 16 30 H 0.10 2.62 7.35 -2.39 -0.02 2.60 16 31 H 0.08 3.46 7.79 -2.39 -0.02 3.44 16 32 H 0.06 2.48 8.05 -2.38 -0.02 2.47 16 33 H 0.38 19.43 6.98 -74.06 -0.52 18.91 16 34 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 35 H 0.05 2.63 7.63 -2.39 -0.02 2.61 16 36 H 0.04 2.15 8.07 -2.39 -0.02 2.13 16 37 H 0.14 3.07 6.31 -2.91 -0.02 3.05 16 38 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -67.61 326.46 1.06 -66.54 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.55 Total: 33.67 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 4.85 Total: 5.23 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -4.36 Total: -89.54 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -2.00 Total: -59.37 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -67.61 1.06 -66.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.019 kcal (2) G-P(sol) polarization free energy of solvation -67.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds