Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47460 * 2 1 4 4 C 1.50701 * 109.47165 * 239.99622 * 2 1 3 5 5 O 1.21283 * 120.00175 * 274.44541 * 4 2 1 6 6 N 1.34775 * 119.99879 * 94.45010 * 4 2 1 7 7 C 1.47024 * 125.64912 * 354.66990 * 6 4 2 8 8 C 1.54319 * 107.26937 * 178.98552 * 7 6 4 9 9 C 1.55155 * 102.94600 * 337.80538 * 8 7 6 10 10 O 1.42898 * 111.00918 * 277.43079 * 9 8 7 11 11 C 1.50703 * 111.00823 * 153.61540 * 9 8 7 12 12 H 1.08002 * 119.99930 * 244.58930 * 11 9 8 13 13 C 1.37873 * 120.00067 * 64.58058 * 11 9 8 14 14 N 1.31517 * 119.99649 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00157 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47220 * 90.00208 * 15 13 11 17 17 H 1.48502 * 109.47171 * 209.99839 * 15 13 11 18 18 H 1.48496 * 109.47177 * 330.00139 * 15 13 11 19 19 C 1.47429 * 125.64552 * 174.71885 * 6 4 2 20 20 C 1.50699 * 109.46872 * 119.99667 * 2 1 3 21 21 C 1.38228 * 119.61800 * 34.73215 * 20 2 1 22 22 C 1.38631 * 119.16188 * 179.75324 * 21 20 2 23 23 C 1.38671 * 118.41829 * 0.50653 * 22 21 20 24 24 C 1.38184 * 119.16710 * 359.73167 * 23 22 21 25 25 N 1.31861 * 119.62024 * 214.99908 * 20 2 1 26 26 H 1.09002 * 109.46929 * 173.72356 * 1 2 3 27 27 H 1.09000 * 109.47036 * 293.72507 * 1 2 3 28 28 H 1.08995 * 109.46709 * 53.72660 * 1 2 3 29 29 H 1.09003 * 109.87794 * 59.56667 * 7 6 4 30 30 H 1.08997 * 109.88226 * 298.40270 * 7 6 4 31 31 H 1.09006 * 110.71847 * 219.44371 * 8 7 6 32 32 H 1.09003 * 110.87544 * 96.24315 * 8 7 6 33 33 H 0.96707 * 113.99567 * 298.54608 * 10 9 8 34 34 H 0.97004 * 119.99928 * 179.97438 * 14 13 11 35 35 H 1.09002 * 110.36446 * 85.24665 * 19 6 4 36 36 H 1.08999 * 110.37147 * 322.92678 * 19 6 4 37 37 H 1.08003 * 120.42285 * 359.97197 * 21 20 2 38 38 H 1.07998 * 120.79439 * 180.20919 * 22 21 20 39 39 H 1.08001 * 120.41904 * 179.70967 * 23 22 21 40 40 H 1.07997 * 119.62125 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.1578 -1.9168 -1.2254 6 7 2.3424 -0.0053 -2.3364 7 6 2.1353 1.4389 -2.5178 8 6 2.6605 1.8041 -3.9222 9 6 3.6507 0.6510 -4.2337 10 8 4.9252 0.8944 -3.6351 11 6 3.7864 0.4421 -5.7200 12 1 3.4573 -0.4842 -6.1674 13 6 4.3303 1.4335 -6.5087 14 7 4.7313 2.5613 -5.9638 15 14 4.4978 1.1749 -8.3511 16 1 3.2675 1.6526 -9.0319 17 1 5.6692 1.9370 -8.8534 18 1 4.6899 -0.2704 -8.6326 19 6 2.9444 -0.5547 -3.5649 20 6 2.0323 -0.7103 1.2305 21 6 1.3289 -1.7898 1.7311 22 6 1.8023 -2.4395 2.8605 23 6 2.9649 -1.9704 3.4531 24 6 3.6116 -0.8822 2.8989 25 7 3.1348 -0.2917 1.8203 26 1 -0.3633 -1.0215 -0.1124 27 1 -0.3633 0.4135 0.9408 28 1 -0.3632 0.6080 -0.8285 29 1 2.6901 1.9911 -1.7593 30 1 1.0731 1.6728 -2.4469 31 1 3.1788 2.7628 -3.9027 32 1 1.8478 1.8214 -4.6484 33 1 5.3624 1.6963 -3.9531 34 1 5.1144 3.2588 -6.5186 35 1 2.1706 -0.9529 -4.2212 36 1 3.6696 -1.3301 -3.3181 37 1 0.4239 -2.1252 1.2464 38 1 1.2755 -3.2878 3.2720 39 1 3.3599 -2.4493 4.3369 40 1 4.5178 -0.5111 3.3542 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844014915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -50.145564 kcal Electronic energy + Delta-G solvation = -23327.344785 eV Core-core repulsion = 19913.899917 eV Total energy + Delta-G solvation = -3413.444868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.54032 -39.24993 -37.27407 -34.34416 -34.10514 -32.46994 -32.18174 -30.15164 -29.40571 -28.27206 -25.66254 -24.67341 -23.36494 -22.74214 -21.52048 -19.71072 -18.73346 -17.23876 -16.92232 -16.85897 -16.14011 -15.58831 -15.04778 -14.94761 -14.72202 -14.32491 -13.89612 -13.74306 -13.60969 -13.08024 -12.97753 -12.56527 -12.47650 -12.10496 -11.80165 -11.73985 -11.46889 -11.37256 -11.32933 -11.28974 -10.86395 -10.60804 -10.47541 -10.02666 -9.92600 -9.45317 -9.44142 -9.34514 -8.90750 -8.66947 -8.20582 -7.98102 -6.28832 -4.36287 1.08762 1.29656 3.02652 3.19672 3.27520 3.31550 3.46343 3.90115 4.19330 4.27391 4.66324 4.80278 4.90287 5.01510 5.01817 5.11775 5.14694 5.24314 5.52480 5.56316 5.61277 5.73656 5.75101 5.77934 5.88827 5.96169 6.04279 6.15299 6.18492 6.29466 6.44086 6.65156 6.68320 6.88996 6.96254 7.28915 7.32959 7.73561 8.01480 8.01716 8.13335 8.61186 8.66666 9.31987 9.43864 10.79075 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033087 B = 0.003704 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.040684 B = 7556.598871 C = 7698.351560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 H 0.108 0.892 4 C 0.537 3.463 5 O -0.552 6.552 6 N -0.603 5.603 7 C 0.097 3.903 8 C -0.138 4.138 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.535 4.535 12 H 0.065 0.935 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 C 0.121 3.879 20 C 0.152 3.848 21 C -0.146 4.146 22 C -0.078 4.078 23 C -0.179 4.179 24 C 0.099 3.901 25 N -0.478 5.478 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.382 0.618 34 H 0.268 0.732 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.903 -2.254 14.632 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.084 4.084 3 H 0.126 0.874 4 C 0.323 3.677 5 O -0.430 6.430 6 N -0.334 5.334 7 C -0.026 4.026 8 C -0.177 4.177 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.573 4.573 12 H 0.083 0.917 13 C -0.129 4.129 14 N -0.535 5.535 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.001 4.001 20 C 0.014 3.986 21 C -0.166 4.166 22 C -0.104 4.104 23 C -0.199 4.199 24 C -0.059 4.059 25 N -0.187 5.187 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.233 0.767 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.467 -2.588 14.617 16.617 hybrid contribution -0.102 -0.160 -0.939 0.958 sum -7.570 -2.748 13.678 15.873 Atomic orbital electron populations 1.21769 0.91604 1.03201 1.03024 1.20135 0.97460 1.00900 0.89892 0.87379 1.19722 0.77974 0.86992 0.82966 1.90659 1.54889 1.14054 1.83443 1.48570 1.60299 1.09832 1.14743 1.22222 0.99132 0.80666 1.00531 1.23198 1.00442 1.02279 0.91751 1.19604 0.81091 0.88049 0.90467 1.86146 1.34207 1.49836 1.68880 1.21455 1.42061 1.02365 0.91441 0.91720 1.24978 0.93978 0.94596 0.99390 1.69658 1.41564 1.05945 1.36367 0.86410 0.77734 0.78527 0.84266 1.20474 1.21028 1.19692 1.22386 0.96033 0.97960 0.83688 1.20593 0.90676 0.93075 0.94254 1.21930 1.01818 0.96197 0.96650 1.21555 0.95546 0.98543 0.94803 1.22108 0.97079 0.98817 1.01893 1.22707 0.98835 0.92642 0.91680 1.67439 1.11604 1.30813 1.08856 0.91467 0.91255 0.91095 0.92135 0.92731 0.89648 0.91287 0.76748 0.92183 0.91054 0.91281 0.84629 0.84918 0.84961 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.40 37.16 0.31 -1.27 16 2 C -0.06 -0.94 2.66 -92.92 -0.25 -1.19 16 3 H 0.11 1.61 6.92 -51.93 -0.36 1.25 16 4 C 0.54 10.47 6.84 -10.99 -0.08 10.39 16 5 O -0.55 -12.39 16.51 5.55 0.09 -12.29 16 6 N -0.60 -12.20 3.33 -170.52 -0.57 -12.77 16 7 C 0.10 1.76 6.21 -3.07 -0.02 1.74 16 8 C -0.14 -2.93 5.51 -24.90 -0.14 -3.07 16 9 C 0.25 6.03 0.87 -89.62 -0.08 5.95 16 10 O -0.58 -15.10 13.15 -35.23 -0.46 -15.56 16 11 C -0.53 -13.94 8.25 -34.44 -0.28 -14.23 16 12 H 0.06 1.68 7.78 -52.49 -0.41 1.27 16 13 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 14 N -0.90 -22.99 10.78 55.43 0.60 -22.39 16 15 Si 0.90 20.16 29.54 -169.99 -5.02 15.13 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C 0.12 2.75 6.06 -2.53 -0.02 2.74 16 20 C 0.15 2.36 5.40 -82.58 -0.45 1.91 16 21 C -0.15 -1.94 8.89 -39.44 -0.35 -2.29 16 22 C -0.08 -0.87 10.18 -39.28 -0.40 -1.27 16 23 C -0.18 -1.91 10.11 -39.44 -0.40 -2.31 16 24 C 0.10 1.25 11.18 -17.55 -0.20 1.06 16 25 N -0.48 -7.68 10.27 -9.47 -0.10 -7.77 16 26 H 0.07 0.76 6.84 -51.93 -0.36 0.41 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.06 7.62 -51.93 -0.40 0.66 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.89 7.69 -51.93 -0.40 1.50 16 32 H 0.07 1.46 8.03 -51.93 -0.42 1.05 16 33 H 0.38 9.86 7.32 45.56 0.33 10.19 16 34 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 35 H 0.07 1.56 8.03 -51.93 -0.42 1.15 16 36 H 0.07 1.70 8.09 -51.93 -0.42 1.28 16 37 H 0.14 1.59 6.46 -52.48 -0.34 1.26 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -30.85 332.46 -7.73 -38.58 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -4.85 Total: 12.10 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.43 Total: -0.05 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.07 Total: -42.93 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.37 Total: -27.85 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.85 -7.73 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.566 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds