Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47460 * 2 1 4 4 C 1.50701 * 109.47165 * 239.99622 * 2 1 3 5 5 O 1.21283 * 120.00175 * 274.44541 * 4 2 1 6 6 N 1.34775 * 119.99879 * 94.45010 * 4 2 1 7 7 C 1.47024 * 125.64912 * 354.66990 * 6 4 2 8 8 C 1.54319 * 107.26937 * 178.98552 * 7 6 4 9 9 C 1.55155 * 102.94600 * 337.80538 * 8 7 6 10 10 O 1.42898 * 111.00918 * 277.43079 * 9 8 7 11 11 C 1.50703 * 111.00823 * 153.61540 * 9 8 7 12 12 H 1.08002 * 119.99930 * 244.58930 * 11 9 8 13 13 C 1.37873 * 120.00067 * 64.58058 * 11 9 8 14 14 N 1.31517 * 119.99649 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00157 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47220 * 90.00208 * 15 13 11 17 17 H 1.48502 * 109.47171 * 209.99839 * 15 13 11 18 18 H 1.48496 * 109.47177 * 330.00139 * 15 13 11 19 19 C 1.47429 * 125.64552 * 174.71885 * 6 4 2 20 20 C 1.50699 * 109.46872 * 119.99667 * 2 1 3 21 21 C 1.38228 * 119.61800 * 34.73215 * 20 2 1 22 22 C 1.38631 * 119.16188 * 179.75324 * 21 20 2 23 23 C 1.38671 * 118.41829 * 0.50653 * 22 21 20 24 24 C 1.38184 * 119.16710 * 359.73167 * 23 22 21 25 25 N 1.31861 * 119.62024 * 214.99908 * 20 2 1 26 26 H 1.09002 * 109.46929 * 173.72356 * 1 2 3 27 27 H 1.09000 * 109.47036 * 293.72507 * 1 2 3 28 28 H 1.08995 * 109.46709 * 53.72660 * 1 2 3 29 29 H 1.09003 * 109.87794 * 59.56667 * 7 6 4 30 30 H 1.08997 * 109.88226 * 298.40270 * 7 6 4 31 31 H 1.09006 * 110.71847 * 219.44371 * 8 7 6 32 32 H 1.09003 * 110.87544 * 96.24315 * 8 7 6 33 33 H 0.96707 * 113.99567 * 298.54608 * 10 9 8 34 34 H 0.97004 * 119.99928 * 179.97438 * 14 13 11 35 35 H 1.09002 * 110.36446 * 85.24665 * 19 6 4 36 36 H 1.08999 * 110.37147 * 322.92678 * 19 6 4 37 37 H 1.08003 * 120.42285 * 359.97197 * 21 20 2 38 38 H 1.07998 * 120.79439 * 180.20919 * 22 21 20 39 39 H 1.08001 * 120.41904 * 179.70967 * 23 22 21 40 40 H 1.07997 * 119.62125 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.1578 -1.9168 -1.2254 6 7 2.3424 -0.0053 -2.3364 7 6 2.1353 1.4389 -2.5178 8 6 2.6605 1.8041 -3.9222 9 6 3.6507 0.6510 -4.2337 10 8 4.9252 0.8944 -3.6351 11 6 3.7864 0.4421 -5.7200 12 1 3.4573 -0.4842 -6.1674 13 6 4.3303 1.4335 -6.5087 14 7 4.7313 2.5613 -5.9638 15 14 4.4978 1.1749 -8.3511 16 1 3.2675 1.6526 -9.0319 17 1 5.6692 1.9370 -8.8534 18 1 4.6899 -0.2704 -8.6326 19 6 2.9444 -0.5547 -3.5649 20 6 2.0323 -0.7103 1.2305 21 6 1.3289 -1.7898 1.7311 22 6 1.8023 -2.4395 2.8605 23 6 2.9649 -1.9704 3.4531 24 6 3.6116 -0.8822 2.8989 25 7 3.1348 -0.2917 1.8203 26 1 -0.3633 -1.0215 -0.1124 27 1 -0.3633 0.4135 0.9408 28 1 -0.3632 0.6080 -0.8285 29 1 2.6901 1.9911 -1.7593 30 1 1.0731 1.6728 -2.4469 31 1 3.1788 2.7628 -3.9027 32 1 1.8478 1.8214 -4.6484 33 1 5.3624 1.6963 -3.9531 34 1 5.1144 3.2588 -6.5186 35 1 2.1706 -0.9529 -4.2212 36 1 3.6696 -1.3301 -3.3181 37 1 0.4239 -2.1252 1.2464 38 1 1.2755 -3.2878 3.2720 39 1 3.3599 -2.4493 4.3369 40 1 4.5178 -0.5111 3.3542 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844014915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -71.659588 kcal Electronic energy + Delta-G solvation = -23328.277703 eV Core-core repulsion = 19913.899917 eV Total energy + Delta-G solvation = -3414.377786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.70895 -40.64527 -38.97577 -36.11029 -35.29909 -34.18993 -33.40619 -31.65663 -30.63925 -29.96046 -27.30078 -25.95475 -24.29842 -24.20506 -22.81169 -21.52572 -20.19459 -19.11679 -18.40405 -17.86462 -17.21666 -16.95075 -16.81467 -16.49802 -16.11587 -15.91779 -15.34465 -14.98097 -14.79326 -14.54301 -14.09653 -13.97346 -13.86619 -13.61756 -13.22859 -13.17295 -13.11908 -13.00652 -12.63783 -12.54309 -12.40791 -12.35808 -12.27103 -11.85905 -11.31047 -11.02099 -10.74082 -10.62455 -10.39728 -10.16064 -9.91834 -9.60555 -8.24451 -6.39074 0.13101 0.38315 1.42100 1.45268 1.53255 1.55401 2.01317 2.40210 2.86526 3.00673 3.19136 3.51625 3.75744 3.85191 3.99081 4.01361 4.12488 4.13662 4.27196 4.30694 4.32532 4.36940 4.57482 4.63249 4.68920 4.76020 4.83748 4.85790 4.90785 5.13586 5.15692 5.21288 5.28374 5.29314 5.43120 5.52059 5.76628 5.79589 6.07501 6.57142 6.64713 7.03993 7.08022 7.31477 7.41425 8.82078 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033087 B = 0.003704 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.040684 B = 7556.598871 C = 7698.351560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 H 0.108 0.892 4 C 0.531 3.469 5 O -0.588 6.588 6 N -0.608 5.608 7 C 0.104 3.896 8 C -0.127 4.127 9 C 0.234 3.766 10 O -0.595 6.595 11 C -0.562 4.562 12 H 0.055 0.945 13 C 0.037 3.963 14 N -0.907 5.907 15 Si 0.961 3.039 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.277 1.277 19 C 0.126 3.874 20 C 0.119 3.881 21 C -0.157 4.157 22 C -0.080 4.080 23 C -0.168 4.168 24 C 0.079 3.921 25 N -0.518 5.518 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.379 0.621 34 H 0.272 0.728 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.145 0.855 38 H 0.168 0.832 39 H 0.170 0.830 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 -2.230 16.000 18.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 H 0.126 0.874 4 C 0.321 3.679 5 O -0.469 6.469 6 N -0.340 5.340 7 C -0.018 4.018 8 C -0.166 4.166 9 C 0.194 3.806 10 O -0.404 6.404 11 C -0.600 4.600 12 H 0.073 0.927 13 C -0.164 4.164 14 N -0.546 5.546 15 Si 0.787 3.213 16 H -0.195 1.195 17 H -0.206 1.206 18 H -0.202 1.202 19 C 0.003 3.997 20 C -0.018 4.018 21 C -0.176 4.176 22 C -0.105 4.105 23 C -0.188 4.188 24 C -0.078 4.078 25 N -0.228 5.228 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.163 0.837 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.777 -2.541 15.999 18.424 hybrid contribution 0.376 -0.232 -1.292 1.366 sum -8.400 -2.774 14.706 17.162 Atomic orbital electron populations 1.21797 0.88671 1.03669 1.04808 1.20144 0.99715 1.00005 0.87613 0.87394 1.20600 0.76921 0.86797 0.83613 1.90623 1.56370 1.15829 1.84068 1.48662 1.60327 1.10633 1.14338 1.22261 1.01570 0.79374 0.98553 1.22979 0.99438 1.00430 0.93731 1.19800 0.81045 0.89870 0.89920 1.86134 1.35387 1.49775 1.69126 1.21671 1.43238 1.02421 0.92719 0.92678 1.25606 0.93516 0.94343 1.02958 1.69722 1.41249 1.06176 1.37498 0.85511 0.77966 0.77984 0.79857 1.19525 1.20619 1.20227 1.22147 0.95575 0.96835 0.85101 1.20714 0.91576 0.94605 0.94893 1.22151 1.02183 0.95782 0.97510 1.22035 0.95664 0.98981 0.93862 1.22532 0.96310 0.97559 1.02371 1.23218 0.99819 0.93478 0.91270 1.67376 1.12400 1.32470 1.10506 0.91512 0.88816 0.90059 0.91345 0.88711 0.90764 0.91361 0.77116 0.91891 0.90690 0.94201 0.83679 0.81482 0.81230 0.80748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.40 71.98 0.60 -2.13 16 2 C -0.05 -1.56 2.66 -12.29 -0.03 -1.60 16 3 H 0.11 3.12 6.92 -2.39 -0.02 3.11 16 4 C 0.53 20.77 6.84 87.66 0.60 21.37 16 5 O -0.59 -26.89 16.51 -3.04 -0.05 -26.94 16 6 N -0.61 -24.67 3.33 -811.78 -2.70 -27.37 16 7 C 0.10 3.66 6.21 86.73 0.54 4.20 16 8 C -0.13 -5.39 5.51 31.78 0.18 -5.22 16 9 C 0.23 11.60 0.87 -10.15 -0.01 11.59 16 10 O -0.60 -31.82 13.15 -148.98 -1.96 -33.78 16 11 C -0.56 -29.88 8.25 25.60 0.21 -29.67 16 12 H 0.05 2.94 7.78 -2.91 -0.02 2.92 16 13 C 0.04 1.91 5.30 84.65 0.45 2.36 16 14 N -0.91 -46.65 10.78 21.45 0.23 -46.42 16 15 Si 0.96 41.30 29.54 68.60 2.03 43.33 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 19 C 0.13 5.92 6.06 86.86 0.53 6.45 16 20 C 0.12 3.62 5.40 42.55 0.23 3.85 16 21 C -0.16 -3.90 8.89 22.36 0.20 -3.71 16 22 C -0.08 -1.54 10.18 22.47 0.23 -1.31 16 23 C -0.17 -3.12 10.11 22.36 0.23 -2.89 16 24 C 0.08 1.90 11.18 84.67 0.95 2.85 16 25 N -0.52 -16.41 10.27 -183.88 -1.89 -18.30 16 26 H 0.07 1.40 6.84 -2.39 -0.02 1.38 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 2.31 7.62 -2.39 -0.02 2.29 16 30 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.07 3.30 7.69 -2.38 -0.02 3.28 16 32 H 0.07 2.87 8.03 -2.39 -0.02 2.85 16 33 H 0.38 20.13 7.32 -74.05 -0.54 19.59 16 34 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 35 H 0.07 3.39 8.03 -2.39 -0.02 3.37 16 36 H 0.04 2.06 8.09 -2.39 -0.02 2.04 16 37 H 0.15 3.18 6.46 -2.91 -0.02 3.16 16 38 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -68.43 332.46 1.06 -67.36 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: 0.51 Total: 35.98 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 4.89 Total: 6.13 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -4.36 Total: -92.09 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -2.01 Total: -60.71 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -68.43 1.06 -67.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844014915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.297 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds