Wall clock time and date at job start Tue Mar 31 2020 06:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46783 * 2 1 4 4 C 1.50700 * 109.47092 * 119.99604 * 2 1 3 5 5 N 1.28024 * 119.99878 * 240.00443 * 4 2 1 6 6 N 1.40104 * 119.99541 * 180.02562 * 5 4 2 7 7 C 1.39605 * 119.99436 * 179.97438 * 6 5 4 8 8 C 1.38963 * 120.08353 * 359.71882 * 7 6 5 9 9 C 1.38083 * 119.92267 * 179.79404 * 8 7 6 10 10 C 1.38305 * 120.07706 * 0.48206 * 9 8 7 11 11 C 1.50696 * 119.91827 * 179.72652 * 10 9 8 12 12 C 1.50702 * 109.47035 * 270.02022 * 11 10 9 13 13 O 1.20831 * 120.00031 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00322 * 180.02562 * 12 11 10 15 15 C 1.38300 * 120.16176 * 359.74928 * 10 9 8 16 16 C 1.38090 * 120.07447 * 0.02562 * 15 10 9 17 17 C 1.52996 * 109.47216 * 240.00034 * 2 1 3 18 18 C 1.50693 * 109.47364 * 65.00037 * 17 2 1 19 19 H 1.08001 * 119.99945 * 359.97438 * 18 17 2 20 20 C 1.37880 * 119.99930 * 180.02562 * 18 17 2 21 21 N 1.31510 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99641 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47168 * 59.99970 * 22 20 18 24 24 H 1.48501 * 109.46611 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47109 * 299.99556 * 22 20 18 26 26 H 1.09004 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47458 * 300.00408 * 1 2 3 28 28 H 1.09005 * 109.47323 * 60.00057 * 1 2 3 29 29 H 1.07999 * 119.99988 * 60.00040 * 4 2 1 30 30 H 0.96999 * 120.00331 * 359.97438 * 6 5 4 31 31 H 1.08005 * 120.04105 * 0.02562 * 8 7 6 32 32 H 1.08000 * 119.96326 * 180.21371 * 9 8 7 33 33 H 1.08998 * 109.47719 * 30.01966 * 11 10 9 34 34 H 1.09003 * 109.47128 * 150.03082 * 11 10 9 35 35 H 0.96697 * 117.00371 * 180.02562 * 14 12 11 36 36 H 1.08000 * 119.96280 * 179.97438 * 15 10 9 37 37 H 1.07998 * 120.03491 * 179.97438 * 16 15 10 38 38 H 1.09004 * 109.46966 * 184.99890 * 17 2 1 39 39 H 1.08999 * 109.46710 * 304.99312 * 17 2 1 40 40 H 0.97001 * 120.00134 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7683 -0.0880 2.0732 6 7 3.2357 -0.7486 3.2169 7 6 4.0386 -0.0702 4.1356 8 6 4.3801 1.2585 3.9143 9 6 5.1710 1.9276 4.8273 10 6 5.6315 1.2740 5.9558 11 6 6.4995 2.0059 6.9467 12 6 7.9478 1.8386 6.5654 13 8 8.2447 1.1919 5.5889 14 8 8.9081 2.4081 7.3106 15 6 5.2976 -0.0498 6.1769 16 6 4.5032 -0.7238 5.2705 17 6 2.0400 -0.7212 -1.2492 18 6 1.6414 0.0570 -2.4765 19 1 1.0800 0.9741 -2.3757 20 6 1.9925 -0.4023 -3.7283 21 7 2.6756 -1.5194 -3.8511 22 14 1.4977 0.5621 -5.2497 23 1 2.0897 1.9225 -5.1877 24 1 1.9928 -0.1380 -6.4621 25 1 0.0177 0.6685 -5.3087 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.7714 -1.7443 1.4015 30 1 3.0014 -1.6773 3.3704 31 1 4.0243 1.7684 3.0312 32 1 5.4340 2.9613 4.6578 33 1 6.2426 3.0651 6.9421 34 1 6.3368 1.5968 7.9439 35 1 9.8224 2.2732 7.0262 36 1 5.6593 -0.5572 7.0590 37 1 4.2433 -1.7576 5.4436 38 1 3.1264 -0.7994 -1.2055 39 1 1.6054 -1.7198 -1.2950 40 1 2.9229 -1.8423 -4.7317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848414382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:49 Heat of formation + Delta-G solvation = -43.217886 kcal Electronic energy + Delta-G solvation = -21275.611265 eV Core-core repulsion = 17862.466804 eV Total energy + Delta-G solvation = -3413.144461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.55703 -39.29117 -37.30966 -36.30975 -35.18892 -33.23036 -32.03335 -30.90488 -30.24171 -27.07611 -26.65928 -24.18144 -22.99388 -22.59387 -21.39041 -20.56756 -19.15142 -18.30094 -17.34527 -17.19312 -16.69412 -16.21268 -16.00682 -15.36028 -14.62312 -14.48132 -14.04341 -13.81354 -13.39542 -13.33391 -13.23835 -13.12020 -12.59019 -12.52340 -11.93290 -11.73155 -11.71179 -11.57647 -11.15152 -11.02966 -10.91618 -10.77800 -10.76950 -10.44943 -10.07247 -9.78032 -9.68903 -9.16100 -9.10695 -8.89138 -8.37523 -7.28032 -6.02247 -4.04511 1.35439 1.48718 2.02270 2.60148 2.88287 2.96066 3.33071 3.37866 3.40072 3.96356 4.44583 4.48110 4.68926 4.95152 5.00359 5.18279 5.20068 5.26563 5.31912 5.34398 5.45606 5.73214 5.79129 5.98754 6.00942 6.11073 6.25033 6.27768 6.35586 6.44558 6.58953 6.66189 6.83340 6.88960 6.96582 7.00173 7.44038 7.60958 7.68877 7.71775 7.95645 8.35853 8.53855 9.00696 9.59276 11.09136 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.002461 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.823203 B =11373.165274 C =11995.833308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.038 4.038 3 H 0.077 0.923 4 C 0.097 3.903 5 N -0.266 5.266 6 N -0.597 5.597 7 C 0.239 3.761 8 C -0.162 4.162 9 C -0.062 4.062 10 C -0.145 4.145 11 C -0.060 4.060 12 C 0.472 3.528 13 O -0.501 6.501 14 O -0.524 6.524 15 C -0.059 4.059 16 C -0.194 4.194 17 C 0.033 3.967 18 C -0.517 4.517 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.893 3.107 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.276 1.276 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.382 0.618 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.408 0.592 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 4.684 23.540 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 H 0.096 0.904 4 C -0.117 4.117 5 N -0.068 5.068 6 N -0.315 5.315 7 C 0.137 3.863 8 C -0.183 4.183 9 C -0.080 4.080 10 C -0.147 4.147 11 C -0.097 4.097 12 C 0.313 3.687 13 O -0.388 6.388 14 O -0.336 6.336 15 C -0.078 4.078 16 C -0.217 4.217 17 C -0.005 4.005 18 C -0.555 4.555 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.202 1.202 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.220 0.780 31 H 0.154 0.846 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.267 0.733 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.036 0.964 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.460 5.335 23.463 24.673 hybrid contribution 0.104 -1.087 -1.121 1.565 sum 5.564 4.248 22.342 23.413 Atomic orbital electron populations 1.21674 0.94504 1.01389 1.01029 1.20327 0.95365 0.99890 0.90337 0.90434 1.26506 0.92866 0.97839 0.94504 1.74060 1.12009 1.25412 0.95312 1.45676 1.53450 1.12116 1.20266 1.17591 0.89351 0.91857 0.87541 1.20763 1.02584 0.93458 1.01533 1.20767 0.95448 0.99323 0.92508 1.18943 1.03140 0.94975 0.97602 1.20127 0.85848 1.03483 1.00254 1.23685 0.89040 0.75567 0.80394 1.90782 1.83668 1.37529 1.26785 1.84531 1.20472 1.71749 1.56857 1.20546 0.95936 0.93140 0.98139 1.20473 1.05271 1.00321 0.95683 1.19117 0.96483 0.95545 0.89331 1.21124 1.35228 1.08471 0.90663 0.92301 1.25010 0.95170 0.95066 0.99158 1.69949 1.38666 1.21151 1.23686 0.86650 0.78879 0.80134 0.82305 1.20204 1.21370 1.20193 0.93207 0.94657 0.90822 0.88461 0.77983 0.84639 0.86204 0.87105 0.87214 0.73301 0.86298 0.86190 0.96371 0.96159 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.98 37.16 0.33 -1.88 16 2 C -0.04 -0.75 2.75 -91.77 -0.25 -1.00 16 3 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 4 C 0.10 1.69 9.66 -13.87 -0.13 1.56 16 5 N -0.27 -4.66 10.22 32.67 0.33 -4.33 16 6 N -0.60 -9.04 6.44 32.42 0.21 -8.83 16 7 C 0.24 3.49 6.72 -83.78 -0.56 2.92 16 8 C -0.16 -2.38 9.51 -39.37 -0.37 -2.76 16 9 C -0.06 -0.76 9.69 -39.61 -0.38 -1.15 16 10 C -0.14 -1.58 4.38 -104.58 -0.46 -2.04 16 11 C -0.06 -0.46 5.94 -29.04 -0.17 -0.63 16 12 C 0.47 4.53 8.32 36.01 0.30 4.83 16 13 O -0.50 -7.00 16.79 -18.75 -0.31 -7.31 16 14 O -0.52 -3.62 13.42 -39.25 -0.53 -4.15 16 15 C -0.06 -0.65 9.69 -39.61 -0.38 -1.03 16 16 C -0.19 -2.37 9.90 -39.37 -0.39 -2.76 16 17 C 0.03 0.82 4.43 -27.89 -0.12 0.70 16 18 C -0.52 -13.93 8.41 -34.44 -0.29 -14.22 16 19 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 22 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.35 6.95 -51.93 -0.36 0.99 16 29 H 0.10 1.50 8.00 -52.49 -0.42 1.08 16 30 H 0.38 4.88 8.64 -182.60 -1.58 3.30 16 31 H 0.14 2.15 7.36 -52.48 -0.39 1.77 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.11 0.62 8.08 -51.93 -0.42 0.21 16 34 H 0.11 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.41 1.34 9.10 45.56 0.41 1.75 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -33.57 351.29 -8.33 -41.91 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.06 Total: 2.83 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.99 Total: -15.94 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 1.28 Total: -38.86 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -0.84 Total: -11.46 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.57 -8.33 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848414382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.312 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds