Wall clock time and date at job start Tue Mar 31 2020 06:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46783 * 2 1 4 4 C 1.50700 * 109.47092 * 119.99604 * 2 1 3 5 5 N 1.28024 * 119.99878 * 240.00443 * 4 2 1 6 6 N 1.40104 * 119.99541 * 180.02562 * 5 4 2 7 7 C 1.39605 * 119.99436 * 179.97438 * 6 5 4 8 8 C 1.38963 * 120.08353 * 359.71882 * 7 6 5 9 9 C 1.38083 * 119.92267 * 179.79404 * 8 7 6 10 10 C 1.38305 * 120.07706 * 0.48206 * 9 8 7 11 11 C 1.50696 * 119.91827 * 179.72652 * 10 9 8 12 12 C 1.50702 * 109.47035 * 270.02022 * 11 10 9 13 13 O 1.20831 * 120.00031 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00322 * 180.02562 * 12 11 10 15 15 C 1.38300 * 120.16176 * 359.74928 * 10 9 8 16 16 C 1.38090 * 120.07447 * 0.02562 * 15 10 9 17 17 C 1.52996 * 109.47216 * 240.00034 * 2 1 3 18 18 C 1.50693 * 109.47364 * 65.00037 * 17 2 1 19 19 H 1.08001 * 119.99945 * 359.97438 * 18 17 2 20 20 C 1.37880 * 119.99930 * 180.02562 * 18 17 2 21 21 N 1.31510 * 120.00104 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99641 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47168 * 59.99970 * 22 20 18 24 24 H 1.48501 * 109.46611 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47109 * 299.99556 * 22 20 18 26 26 H 1.09004 * 109.47239 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47458 * 300.00408 * 1 2 3 28 28 H 1.09005 * 109.47323 * 60.00057 * 1 2 3 29 29 H 1.07999 * 119.99988 * 60.00040 * 4 2 1 30 30 H 0.96999 * 120.00331 * 359.97438 * 6 5 4 31 31 H 1.08005 * 120.04105 * 0.02562 * 8 7 6 32 32 H 1.08000 * 119.96326 * 180.21371 * 9 8 7 33 33 H 1.08998 * 109.47719 * 30.01966 * 11 10 9 34 34 H 1.09003 * 109.47128 * 150.03082 * 11 10 9 35 35 H 0.96697 * 117.00371 * 180.02562 * 14 12 11 36 36 H 1.08000 * 119.96280 * 179.97438 * 15 10 9 37 37 H 1.07998 * 120.03491 * 179.97438 * 16 15 10 38 38 H 1.09004 * 109.46966 * 184.99890 * 17 2 1 39 39 H 1.08999 * 109.46710 * 304.99312 * 17 2 1 40 40 H 0.97001 * 120.00134 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7683 -0.0880 2.0732 6 7 3.2357 -0.7486 3.2169 7 6 4.0386 -0.0702 4.1356 8 6 4.3801 1.2585 3.9143 9 6 5.1710 1.9276 4.8273 10 6 5.6315 1.2740 5.9558 11 6 6.4995 2.0059 6.9467 12 6 7.9478 1.8386 6.5654 13 8 8.2447 1.1919 5.5889 14 8 8.9081 2.4081 7.3106 15 6 5.2976 -0.0498 6.1769 16 6 4.5032 -0.7238 5.2705 17 6 2.0400 -0.7212 -1.2492 18 6 1.6414 0.0570 -2.4765 19 1 1.0800 0.9741 -2.3757 20 6 1.9925 -0.4023 -3.7283 21 7 2.6756 -1.5194 -3.8511 22 14 1.4977 0.5621 -5.2497 23 1 2.0897 1.9225 -5.1877 24 1 1.9928 -0.1380 -6.4621 25 1 0.0177 0.6685 -5.3087 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.7714 -1.7443 1.4015 30 1 3.0014 -1.6773 3.3704 31 1 4.0243 1.7684 3.0312 32 1 5.4340 2.9613 4.6578 33 1 6.2426 3.0651 6.9421 34 1 6.3368 1.5968 7.9439 35 1 9.8224 2.2732 7.0262 36 1 5.6593 -0.5572 7.0590 37 1 4.2433 -1.7576 5.4436 38 1 3.1264 -0.7994 -1.2055 39 1 1.6054 -1.7198 -1.2950 40 1 2.9229 -1.8423 -4.7317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848414382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:49 Heat of formation + Delta-G solvation = -64.220644 kcal Electronic energy + Delta-G solvation = -21276.522013 eV Core-core repulsion = 17862.466804 eV Total energy + Delta-G solvation = -3414.055209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32401 -40.24496 -38.60854 -37.07759 -36.60924 -34.72324 -33.60644 -31.85701 -31.35103 -28.89977 -27.67988 -25.83616 -24.19905 -23.56043 -22.66228 -21.47749 -20.64648 -18.99799 -18.75894 -18.40072 -17.94469 -17.40624 -16.86297 -16.51541 -16.21800 -15.50997 -15.22498 -14.99956 -14.80823 -14.59469 -14.32953 -14.28350 -14.04310 -13.55903 -13.12000 -13.08397 -12.79515 -12.74370 -12.53663 -12.45615 -12.43226 -12.24756 -11.95948 -11.76013 -11.60125 -11.36137 -11.26470 -10.91151 -10.54951 -10.49999 -9.84738 -8.38793 -8.15751 -6.25285 0.36545 0.52665 1.31754 1.32419 1.43625 1.46078 1.53459 1.72239 2.29039 2.44778 3.03369 3.18244 3.73452 3.83828 3.94698 4.04725 4.12930 4.34184 4.45353 4.49777 4.57115 4.59149 4.65006 4.70424 4.82845 4.95627 5.05982 5.17187 5.23551 5.32657 5.41270 5.47092 5.52870 5.61222 5.68540 5.70551 5.77902 5.86561 5.93411 6.26851 6.38277 6.89620 7.08237 7.30247 7.43013 8.95746 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.002461 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.823203 B =11373.165274 C =11995.833308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.027 4.027 3 H 0.064 0.936 4 C 0.088 3.912 5 N -0.278 5.278 6 N -0.595 5.595 7 C 0.207 3.793 8 C -0.188 4.188 9 C -0.071 4.071 10 C -0.139 4.139 11 C -0.059 4.059 12 C 0.479 3.521 13 O -0.554 6.554 14 O -0.514 6.514 15 C -0.062 4.062 16 C -0.193 4.193 17 C 0.040 3.960 18 C -0.528 4.528 19 H 0.067 0.933 20 C -0.001 4.001 21 N -0.936 5.936 22 Si 0.961 3.039 23 H -0.270 1.270 24 H -0.288 1.288 25 H -0.262 1.262 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.394 0.606 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.425 0.575 36 H 0.152 0.848 37 H 0.141 0.859 38 H -0.019 1.019 39 H 0.005 0.995 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 5.589 25.970 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.049 4.049 3 H 0.082 0.918 4 C -0.127 4.127 5 N -0.081 5.081 6 N -0.317 5.317 7 C 0.107 3.893 8 C -0.210 4.210 9 C -0.090 4.090 10 C -0.141 4.141 11 C -0.095 4.095 12 C 0.323 3.677 13 O -0.445 6.445 14 O -0.328 6.328 15 C -0.080 4.080 16 C -0.215 4.215 17 C 0.002 3.998 18 C -0.566 4.566 19 H 0.085 0.915 20 C -0.199 4.199 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.196 1.196 24 H -0.213 1.213 25 H -0.187 1.187 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.233 0.767 31 H 0.130 0.870 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.286 0.714 36 H 0.169 0.831 37 H 0.158 0.842 38 H 0.000 1.000 39 H 0.023 0.977 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.435 6.271 25.942 27.237 hybrid contribution 0.277 -1.312 -1.672 2.144 sum 5.712 4.959 24.270 25.421 Atomic orbital electron populations 1.21590 0.92472 1.02130 1.01638 1.20017 0.97008 0.98503 0.89331 0.91755 1.26191 0.93846 0.98551 0.94113 1.73899 1.11229 1.26858 0.96108 1.45552 1.53834 1.12661 1.19639 1.17900 0.90617 0.92209 0.88584 1.20779 1.04286 0.94125 1.01823 1.21019 0.95043 1.00217 0.92676 1.19340 1.02216 0.95205 0.97319 1.20267 0.83872 1.04809 1.00599 1.23971 0.90019 0.74287 0.79408 1.90782 1.84524 1.40085 1.29084 1.84493 1.21451 1.70827 1.56034 1.21012 0.94957 0.93301 0.98765 1.20787 1.04672 1.01316 0.94766 1.18952 0.94087 0.95221 0.91552 1.21575 1.34681 1.08755 0.91628 0.91455 1.25935 0.95219 0.96050 1.02660 1.70092 1.40184 1.22984 1.24375 0.85558 0.79167 0.78606 0.78081 1.19552 1.21335 1.18713 0.92412 0.92063 0.92075 0.86505 0.76673 0.86986 0.84686 0.84634 0.83851 0.71416 0.83076 0.84156 1.00016 0.97703 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.10 8.98 71.98 0.65 -3.45 16 2 C -0.03 -1.10 2.75 -11.54 -0.03 -1.14 16 3 H 0.06 2.72 8.11 -2.38 -0.02 2.70 16 4 C 0.09 3.10 9.66 88.66 0.86 3.96 16 5 N -0.28 -10.02 10.22 -50.46 -0.52 -10.53 16 6 N -0.60 -18.20 6.44 -51.35 -0.33 -18.53 16 7 C 0.21 6.06 6.72 38.25 0.26 6.32 16 8 C -0.19 -5.70 9.51 22.41 0.21 -5.49 16 9 C -0.07 -1.71 9.69 22.25 0.22 -1.49 16 10 C -0.14 -2.72 4.38 -19.84 -0.09 -2.80 16 11 C -0.06 -0.68 5.94 29.10 0.17 -0.51 16 12 C 0.48 7.96 8.32 71.24 0.59 8.55 16 13 O -0.55 -14.81 16.79 21.95 0.37 -14.44 16 14 O -0.51 -5.58 13.42 -51.39 -0.69 -6.27 16 15 C -0.06 -1.19 9.69 22.25 0.22 -0.98 16 16 C -0.19 -4.41 9.90 22.41 0.22 -4.19 16 17 C 0.04 2.06 4.43 29.84 0.13 2.19 16 18 C -0.53 -29.09 8.41 25.60 0.22 -28.87 16 19 H 0.07 3.51 7.06 -2.91 -0.02 3.49 16 20 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 21 N -0.94 -56.78 13.29 21.45 0.28 -56.49 16 22 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 26 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.06 2.22 6.95 -2.38 -0.02 2.20 16 29 H 0.12 3.60 8.00 -2.91 -0.02 3.58 16 30 H 0.39 9.94 8.64 -213.32 -1.84 8.10 16 31 H 0.11 3.81 7.36 -2.91 -0.02 3.79 16 32 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.14 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.14 0.77 8.08 -2.39 -0.02 0.75 16 35 H 0.42 1.74 9.10 -74.06 -0.67 1.06 16 36 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 38 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 39 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -75.19 351.29 3.77 -71.42 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -1.46 Total: 16.40 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.08 Total: -27.51 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -0.56 Total: -85.56 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.32 Total: -20.70 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -75.19 3.77 -71.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848414382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.195 kcal (2) G-P(sol) polarization free energy of solvation -75.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds