Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46415 * 2 1 4 4 C 1.50697 * 109.47473 * 240.00406 * 2 1 3 5 5 N 1.28012 * 120.00089 * 120.00123 * 4 2 1 6 6 N 1.40105 * 119.99605 * 179.97438 * 5 4 2 7 7 C 1.39606 * 119.99844 * 179.71780 * 6 5 4 8 8 C 1.38970 * 120.07740 * 0.02562 * 7 6 5 9 9 C 1.38092 * 119.91609 * 179.74461 * 8 7 6 10 10 C 1.38293 * 120.07903 * 0.52721 * 9 8 7 11 11 C 1.50701 * 119.91821 * 179.72628 * 10 9 8 12 12 C 1.50697 * 109.47061 * 270.01506 * 11 10 9 13 13 O 1.20827 * 120.00115 * 0.02562 * 12 11 10 14 14 O 1.34230 * 120.00459 * 179.97438 * 12 11 10 15 15 C 1.38298 * 120.16203 * 359.74372 * 10 9 8 16 16 C 1.38084 * 120.08232 * 359.97438 * 15 10 9 17 17 C 1.52998 * 109.47041 * 119.99488 * 2 1 3 18 18 C 1.50695 * 109.47352 * 295.00792 * 17 2 1 19 19 H 1.08007 * 120.00226 * 359.97438 * 18 17 2 20 20 C 1.37881 * 120.00232 * 180.02562 * 18 17 2 21 21 N 1.31519 * 119.99648 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00206 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47069 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47168 * 119.99976 * 22 20 18 25 25 H 1.48502 * 109.46719 * 239.99681 * 22 20 18 26 26 H 1.09006 * 109.46869 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47499 * 300.00101 * 1 2 3 28 28 H 1.09006 * 109.46809 * 60.00406 * 1 2 3 29 29 H 1.08001 * 119.99435 * 299.99317 * 4 2 1 30 30 H 0.97001 * 120.00437 * 0.02562 * 6 5 4 31 31 H 1.07997 * 120.04288 * 359.97438 * 8 7 6 32 32 H 1.07998 * 119.95831 * 180.24651 * 9 8 7 33 33 H 1.09000 * 109.47383 * 30.01781 * 11 10 9 34 34 H 1.09005 * 109.47464 * 150.01814 * 11 10 9 35 35 H 0.96693 * 117.00069 * 180.02562 * 14 12 11 36 36 H 1.08003 * 119.96372 * 180.02562 * 15 10 9 37 37 H 1.07995 * 120.04331 * 180.02562 * 16 15 10 38 38 H 1.09008 * 109.46718 * 55.00573 * 17 2 1 39 39 H 1.08992 * 109.47126 * 175.00369 * 17 2 1 40 40 H 0.96999 * 119.99804 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.7684 -0.0881 -2.0730 6 7 3.2359 -0.7487 -3.2167 7 6 4.0337 -0.0685 -4.1386 8 6 4.3656 1.2636 -3.9231 9 6 5.1593 1.9317 -4.8345 10 6 5.6148 1.2798 -5.9659 11 6 6.4757 2.0142 -6.9612 12 6 5.5987 2.6688 -7.9973 13 8 4.3978 2.5515 -7.9337 14 8 6.1515 3.3831 -8.9902 15 6 5.2819 -0.0442 -6.1864 16 6 4.4934 -0.7204 -5.2765 17 6 2.0400 -0.7211 1.2493 18 6 1.6412 0.0571 2.4766 19 1 1.0804 0.9747 2.3756 20 6 1.9931 -0.4015 3.7283 21 7 2.6764 -1.5186 3.8512 22 14 1.4993 0.5635 5.2496 23 1 0.7428 1.7750 4.8433 24 1 0.6456 -0.2854 6.1189 25 1 2.7177 0.9684 5.9959 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.7716 -1.7443 -1.4013 30 1 3.0016 -1.6774 -3.3703 31 1 4.0063 1.7747 -3.0422 32 1 5.4209 2.9659 -4.6658 33 1 7.0588 2.7766 -6.4446 34 1 7.1496 1.3095 -7.4485 35 1 5.5485 3.7845 -9.6307 36 1 5.6397 -0.5504 -7.0709 37 1 4.2341 -1.7545 -5.4491 38 1 1.6054 -1.7198 1.2952 39 1 3.1262 -0.7993 1.2057 40 1 2.9236 -1.8415 4.7318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848414383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -43.455674 kcal Electronic energy + Delta-G solvation = -21254.520891 eV Core-core repulsion = 17841.366119 eV Total energy + Delta-G solvation = -3413.154773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57833 -39.29642 -37.31288 -36.33360 -35.19226 -33.23545 -32.03838 -30.90550 -30.24559 -27.08129 -26.66281 -24.18567 -22.99612 -22.60586 -21.39769 -20.57292 -19.15297 -18.32971 -17.34685 -17.19584 -16.70874 -16.22743 -16.02099 -15.36355 -14.62595 -14.48102 -14.04606 -13.81252 -13.42976 -13.35259 -13.21501 -13.10715 -12.60725 -12.52503 -11.97430 -11.74016 -11.66833 -11.61094 -11.16058 -11.03170 -10.93589 -10.80061 -10.75587 -10.43829 -10.08460 -9.78468 -9.68707 -9.16661 -9.08919 -8.89206 -8.39024 -7.28119 -6.03509 -4.05438 1.35386 1.48688 1.99718 2.59873 2.88904 2.93828 3.30040 3.38062 3.41789 3.96190 4.43884 4.47771 4.68858 4.95114 5.00291 5.17818 5.19218 5.26486 5.31600 5.33574 5.45480 5.73127 5.79061 5.99030 6.00948 6.11350 6.23437 6.26579 6.35474 6.44881 6.58892 6.66256 6.83278 6.89067 6.96651 6.99974 7.43953 7.60447 7.66336 7.70947 7.94862 8.35120 8.53786 9.00258 9.58482 11.07928 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.002324 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.116617 B =12045.943090 C =12234.501302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.038 4.038 3 H 0.077 0.923 4 C 0.097 3.903 5 N -0.266 5.266 6 N -0.597 5.597 7 C 0.239 3.761 8 C -0.162 4.162 9 C -0.062 4.062 10 C -0.144 4.144 11 C -0.060 4.060 12 C 0.473 3.527 13 O -0.503 6.503 14 O -0.523 6.523 15 C -0.059 4.059 16 C -0.194 4.194 17 C 0.033 3.967 18 C -0.515 4.515 19 H 0.060 0.940 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.284 1.284 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.098 0.902 30 H 0.382 0.618 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.408 0.592 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.020 0.980 39 H 0.018 0.982 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 4.320 -22.909 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 H 0.096 0.904 4 C -0.117 4.117 5 N -0.068 5.068 6 N -0.315 5.315 7 C 0.137 3.863 8 C -0.183 4.183 9 C -0.080 4.080 10 C -0.146 4.146 11 C -0.098 4.098 12 C 0.314 3.686 13 O -0.390 6.390 14 O -0.335 6.335 15 C -0.078 4.078 16 C -0.217 4.217 17 C -0.005 4.005 18 C -0.553 4.553 19 H 0.078 0.922 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.720 3.280 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.220 0.780 31 H 0.154 0.846 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.267 0.733 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.039 0.961 39 H 0.036 0.964 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.793 4.890 -22.681 24.176 hybrid contribution -1.029 -0.704 0.432 1.319 sum 5.764 4.187 -22.249 23.362 Atomic orbital electron populations 1.21676 0.94506 1.01393 1.01056 1.20327 0.95378 0.99884 0.90332 0.90433 1.26502 0.92862 0.97835 0.94516 1.74056 1.12087 1.25365 0.95279 1.45676 1.53639 1.12038 1.20157 1.17595 0.89370 0.91839 0.87533 1.20765 1.02370 0.93384 1.01826 1.20766 0.95403 0.98934 0.92938 1.18936 1.04343 0.94644 0.96719 1.20135 0.96538 1.00241 0.92856 1.23693 0.88310 0.75738 0.80810 1.90766 1.16728 1.57710 1.73765 1.84539 1.46062 1.63914 1.39035 1.20543 0.96086 0.93514 0.97612 1.20471 1.05222 1.00450 0.95605 1.19125 0.96466 0.95565 0.89357 1.21207 1.35009 1.08443 0.90642 0.92191 1.25019 0.95192 0.95092 0.99190 1.69974 1.38830 1.21201 1.23450 0.86532 0.78279 0.80094 0.83090 1.19650 1.21073 1.21066 0.93203 0.90809 0.94644 0.88460 0.77982 0.84639 0.86205 0.87057 0.87174 0.73346 0.86300 0.86188 0.96149 0.96367 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.99 37.16 0.33 -1.90 16 2 C -0.04 -0.75 2.75 -91.77 -0.25 -1.00 16 3 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 4 C 0.10 1.69 9.66 -13.87 -0.13 1.56 16 5 N -0.27 -4.66 10.22 32.67 0.33 -4.32 16 6 N -0.60 -9.04 6.44 32.42 0.21 -8.83 16 7 C 0.24 3.48 6.72 -83.78 -0.56 2.92 16 8 C -0.16 -2.38 9.51 -39.36 -0.37 -2.76 16 9 C -0.06 -0.76 9.69 -39.61 -0.38 -1.14 16 10 C -0.14 -1.58 4.38 -104.58 -0.46 -2.04 16 11 C -0.06 -0.46 5.94 -29.04 -0.17 -0.63 16 12 C 0.47 4.39 8.32 36.00 0.30 4.69 16 13 O -0.50 -6.73 16.79 -18.75 -0.31 -7.05 16 14 O -0.52 -3.48 13.42 -39.26 -0.53 -4.00 16 15 C -0.06 -0.64 9.69 -39.62 -0.38 -1.03 16 16 C -0.19 -2.37 9.90 -39.37 -0.39 -2.76 16 17 C 0.03 0.81 4.43 -27.89 -0.12 0.68 16 18 C -0.51 -13.81 8.41 -34.44 -0.29 -14.10 16 19 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 22 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 1.50 8.00 -52.49 -0.42 1.08 16 30 H 0.38 4.87 8.64 -182.59 -1.58 3.29 16 31 H 0.14 2.15 7.36 -52.49 -0.39 1.76 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.11 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.11 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.41 1.18 9.10 45.56 0.41 1.60 16 36 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -33.32 351.29 -8.33 -41.65 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.06 Total: 2.66 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -2.99 Total: -16.03 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 1.28 Total: -38.65 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.84 Total: -11.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.32 -8.33 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848414383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.805 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds