Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46415 * 2 1 4 4 C 1.50697 * 109.47473 * 240.00406 * 2 1 3 5 5 N 1.28012 * 120.00089 * 120.00123 * 4 2 1 6 6 N 1.40105 * 119.99605 * 179.97438 * 5 4 2 7 7 C 1.39606 * 119.99844 * 179.71780 * 6 5 4 8 8 C 1.38970 * 120.07740 * 0.02562 * 7 6 5 9 9 C 1.38092 * 119.91609 * 179.74461 * 8 7 6 10 10 C 1.38293 * 120.07903 * 0.52721 * 9 8 7 11 11 C 1.50701 * 119.91821 * 179.72628 * 10 9 8 12 12 C 1.50697 * 109.47061 * 270.01506 * 11 10 9 13 13 O 1.20827 * 120.00115 * 0.02562 * 12 11 10 14 14 O 1.34230 * 120.00459 * 179.97438 * 12 11 10 15 15 C 1.38298 * 120.16203 * 359.74372 * 10 9 8 16 16 C 1.38084 * 120.08232 * 359.97438 * 15 10 9 17 17 C 1.52998 * 109.47041 * 119.99488 * 2 1 3 18 18 C 1.50695 * 109.47352 * 295.00792 * 17 2 1 19 19 H 1.08007 * 120.00226 * 359.97438 * 18 17 2 20 20 C 1.37881 * 120.00232 * 180.02562 * 18 17 2 21 21 N 1.31519 * 119.99648 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00206 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47069 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47168 * 119.99976 * 22 20 18 25 25 H 1.48502 * 109.46719 * 239.99681 * 22 20 18 26 26 H 1.09006 * 109.46869 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47499 * 300.00101 * 1 2 3 28 28 H 1.09006 * 109.46809 * 60.00406 * 1 2 3 29 29 H 1.08001 * 119.99435 * 299.99317 * 4 2 1 30 30 H 0.97001 * 120.00437 * 0.02562 * 6 5 4 31 31 H 1.07997 * 120.04288 * 359.97438 * 8 7 6 32 32 H 1.07998 * 119.95831 * 180.24651 * 9 8 7 33 33 H 1.09000 * 109.47383 * 30.01781 * 11 10 9 34 34 H 1.09005 * 109.47464 * 150.01814 * 11 10 9 35 35 H 0.96693 * 117.00069 * 180.02562 * 14 12 11 36 36 H 1.08003 * 119.96372 * 180.02562 * 15 10 9 37 37 H 1.07995 * 120.04331 * 180.02562 * 16 15 10 38 38 H 1.09008 * 109.46718 * 55.00573 * 17 2 1 39 39 H 1.08992 * 109.47126 * 175.00369 * 17 2 1 40 40 H 0.96999 * 119.99804 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 7 2.7684 -0.0881 -2.0730 6 7 3.2359 -0.7487 -3.2167 7 6 4.0337 -0.0685 -4.1386 8 6 4.3656 1.2636 -3.9231 9 6 5.1593 1.9317 -4.8345 10 6 5.6148 1.2798 -5.9659 11 6 6.4757 2.0142 -6.9612 12 6 5.5987 2.6688 -7.9973 13 8 4.3978 2.5515 -7.9337 14 8 6.1515 3.3831 -8.9902 15 6 5.2819 -0.0442 -6.1864 16 6 4.4934 -0.7204 -5.2765 17 6 2.0400 -0.7211 1.2493 18 6 1.6412 0.0571 2.4766 19 1 1.0804 0.9747 2.3756 20 6 1.9931 -0.4015 3.7283 21 7 2.6764 -1.5186 3.8512 22 14 1.4993 0.5635 5.2496 23 1 0.7428 1.7750 4.8433 24 1 0.6456 -0.2854 6.1189 25 1 2.7177 0.9684 5.9959 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.7716 -1.7443 -1.4013 30 1 3.0016 -1.6774 -3.3703 31 1 4.0063 1.7747 -3.0422 32 1 5.4209 2.9659 -4.6658 33 1 7.0588 2.7766 -6.4446 34 1 7.1496 1.3095 -7.4485 35 1 5.5485 3.7845 -9.6307 36 1 5.6397 -0.5504 -7.0709 37 1 4.2341 -1.7545 -5.4491 38 1 1.6054 -1.7198 1.2952 39 1 3.1262 -0.7993 1.2057 40 1 2.9236 -1.8415 4.7318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848414383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = -64.113357 kcal Electronic energy + Delta-G solvation = -21255.416675 eV Core-core repulsion = 17841.366119 eV Total energy + Delta-G solvation = -3414.050557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32096 -40.24389 -38.60929 -37.07368 -36.60688 -34.72041 -33.60474 -31.85662 -31.35084 -28.89894 -27.68052 -25.83805 -24.19822 -23.55874 -22.66132 -21.47759 -20.64627 -18.99849 -18.75875 -18.40031 -17.94637 -17.39899 -16.85733 -16.50495 -16.21939 -15.50811 -15.22279 -15.00581 -14.80671 -14.60000 -14.34013 -14.28381 -14.00808 -13.59179 -13.13252 -13.09295 -12.79852 -12.70801 -12.53806 -12.46249 -12.44494 -12.22119 -11.96538 -11.76721 -11.59330 -11.35925 -11.23849 -10.90411 -10.55407 -10.50418 -9.84740 -8.38758 -8.15693 -6.24778 0.36710 0.52710 1.31849 1.32706 1.42941 1.44338 1.56656 1.72267 2.29012 2.44975 3.03346 3.18428 3.73549 3.83805 3.94711 4.04592 4.12896 4.33920 4.45151 4.49876 4.56999 4.58878 4.64958 4.70481 4.82767 4.95532 5.05882 5.16953 5.23454 5.32481 5.41251 5.46591 5.53616 5.61290 5.68565 5.70565 5.78099 5.87147 5.93387 6.27471 6.38305 6.90315 7.08716 7.30326 7.43442 8.96105 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.002324 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.116617 B =12045.943090 C =12234.501302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.028 4.028 3 H 0.064 0.936 4 C 0.088 3.912 5 N -0.278 5.278 6 N -0.595 5.595 7 C 0.207 3.793 8 C -0.188 4.188 9 C -0.071 4.071 10 C -0.139 4.139 11 C -0.060 4.060 12 C 0.481 3.519 13 O -0.552 6.552 14 O -0.514 6.514 15 C -0.062 4.062 16 C -0.193 4.193 17 C 0.041 3.959 18 C -0.526 4.526 19 H 0.066 0.934 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.961 3.039 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.284 1.284 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.394 0.606 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.425 0.575 36 H 0.152 0.848 37 H 0.141 0.859 38 H 0.005 0.995 39 H -0.016 1.016 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.006 4.945 -24.934 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.049 4.049 3 H 0.082 0.918 4 C -0.127 4.127 5 N -0.081 5.081 6 N -0.317 5.317 7 C 0.107 3.893 8 C -0.210 4.210 9 C -0.090 4.090 10 C -0.141 4.141 11 C -0.097 4.097 12 C 0.325 3.675 13 O -0.443 6.443 14 O -0.328 6.328 15 C -0.080 4.080 16 C -0.215 4.215 17 C 0.002 3.998 18 C -0.564 4.564 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.575 5.575 22 Si 0.786 3.214 23 H -0.184 1.184 24 H -0.205 1.205 25 H -0.210 1.210 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.135 0.865 30 H 0.233 0.767 31 H 0.130 0.870 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.286 0.714 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.023 0.977 39 H 0.002 0.998 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.472 5.543 -24.751 26.442 hybrid contribution -1.093 -0.836 0.851 1.618 sum 6.379 4.706 -23.900 25.180 Atomic orbital electron populations 1.21595 0.92635 1.02125 1.01556 1.20018 0.96894 0.98535 0.89425 0.91762 1.26186 0.93843 0.98549 0.94115 1.73895 1.11333 1.26796 0.96071 1.45552 1.54017 1.12578 1.19540 1.17903 0.90637 0.92190 0.88581 1.20781 1.04073 0.94031 1.02118 1.21016 0.95039 0.99756 0.93153 1.19333 1.03357 0.94896 0.96473 1.20262 0.96049 1.01285 0.92075 1.23899 0.87603 0.75039 0.80983 1.90765 1.18779 1.59697 1.75050 1.84499 1.46253 1.63258 1.38809 1.21009 0.95173 0.93716 0.98149 1.20786 1.04628 1.01456 0.94659 1.18953 0.94204 0.95187 0.91430 1.21629 1.34485 1.08672 0.91643 0.91561 1.25925 0.95260 0.96085 1.02618 1.70105 1.40254 1.22948 1.24238 0.85452 0.77946 0.78972 0.79018 1.18402 1.20493 1.20963 0.92366 0.92056 0.92278 0.86492 0.76670 0.86975 0.84694 0.84769 0.83978 0.71384 0.83086 0.84149 0.97682 0.99776 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 8.99 71.98 0.65 -3.53 16 2 C -0.03 -1.11 2.75 -11.54 -0.03 -1.14 16 3 H 0.06 2.72 8.11 -2.38 -0.02 2.70 16 4 C 0.09 3.10 9.66 88.66 0.86 3.96 16 5 N -0.28 -10.01 10.22 -50.46 -0.52 -10.52 16 6 N -0.60 -18.18 6.44 -51.34 -0.33 -18.51 16 7 C 0.21 6.05 6.72 38.25 0.26 6.31 16 8 C -0.19 -5.69 9.51 22.41 0.21 -5.48 16 9 C -0.07 -1.71 9.69 22.25 0.22 -1.49 16 10 C -0.14 -2.72 4.38 -19.84 -0.09 -2.80 16 11 C -0.06 -0.70 5.94 29.10 0.17 -0.52 16 12 C 0.48 7.64 8.32 71.23 0.59 8.23 16 13 O -0.55 -13.98 16.79 21.96 0.37 -13.61 16 14 O -0.51 -5.25 13.42 -51.42 -0.69 -5.94 16 15 C -0.06 -1.19 9.69 22.25 0.22 -0.98 16 16 C -0.19 -4.40 9.90 22.41 0.22 -4.18 16 17 C 0.04 2.06 4.43 29.85 0.13 2.19 16 18 C -0.53 -28.81 8.41 25.60 0.22 -28.60 16 19 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 20 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 21 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 22 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.06 2.25 6.95 -2.39 -0.02 2.23 16 28 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.12 3.60 8.00 -2.91 -0.02 3.58 16 30 H 0.39 9.92 8.64 -213.32 -1.84 8.08 16 31 H 0.11 3.81 7.36 -2.91 -0.02 3.79 16 32 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.13 1.01 8.08 -2.39 -0.02 0.99 16 34 H 0.14 0.81 8.08 -2.38 -0.02 0.79 16 35 H 0.42 1.34 9.10 -74.06 -0.67 0.67 16 36 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 39 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -74.14 351.29 3.77 -70.36 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -1.46 Total: 15.96 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 4.08 Total: -27.66 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -0.56 Total: -84.88 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.32 Total: -19.55 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -74.14 3.77 -70.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848414383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.251 kcal (2) G-P(sol) polarization free energy of solvation -74.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds