Wall clock time and date at job start Tue Mar 31 2020 06:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46882 * 2 1 4 4 O 1.21313 * 119.99967 * 0.02562 * 3 2 1 5 5 C 1.46755 * 119.99781 * 179.97438 * 3 2 1 6 6 C 1.40104 * 120.09505 * 179.97438 * 5 3 2 7 7 C 1.36546 * 119.90709 * 180.02562 * 6 5 3 8 8 C 1.39318 * 120.08887 * 0.02562 * 7 6 5 9 9 N 1.38893 * 119.89796 * 179.97438 * 8 7 6 10 10 C 1.46506 * 119.99569 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46928 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00169 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47324 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47196 * 59.99759 * 19 17 15 21 21 H 1.48494 * 109.47285 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46819 * 300.00256 * 19 17 15 23 23 C 1.39305 * 120.19354 * 0.25322 * 8 7 6 24 24 C 1.36544 * 120.09939 * 359.48440 * 23 8 7 25 25 H 1.08998 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47396 * 299.99986 * 1 2 3 27 27 H 1.09000 * 109.47188 * 60.00103 * 1 2 3 28 28 H 1.08995 * 109.46967 * 239.99693 * 2 1 3 29 29 H 1.08995 * 109.46496 * 119.99852 * 2 1 3 30 30 H 1.08005 * 120.05092 * 0.02562 * 6 5 3 31 31 H 1.07996 * 119.95733 * 179.97438 * 7 6 5 32 32 H 0.96999 * 120.00351 * 359.97438 * 9 8 7 33 33 H 1.09004 * 109.47073 * 299.99689 * 10 9 8 34 34 H 1.09000 * 109.47212 * 59.99772 * 10 9 8 35 35 H 0.96996 * 119.99844 * 0.02562 * 13 11 10 36 36 H 1.09004 * 109.47042 * 300.00295 * 14 13 11 37 37 H 1.09004 * 109.46923 * 59.99881 * 14 13 11 38 38 H 0.97005 * 120.00032 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.95197 * 179.72468 * 23 8 7 40 40 H 1.07999 * 120.05561 * 180.23684 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2439 2.3429 0.0005 5 6 3.4752 1.6890 0.0006 6 6 3.9444 3.0091 0.0000 7 6 5.2876 3.2542 0.0000 8 6 6.1911 2.1938 0.0000 9 7 7.5567 2.4476 -0.0005 10 6 8.5087 1.3340 -0.0011 11 6 9.9150 1.8755 -0.0022 12 8 10.1035 3.0736 -0.0030 13 7 10.9633 1.0284 -0.0024 14 6 12.3305 1.5548 -0.0041 15 6 13.3098 0.4094 -0.0045 16 1 12.9498 -0.6088 -0.0032 17 6 14.6653 0.6613 -0.0066 18 7 15.1037 1.9012 -0.0076 19 14 15.8792 -0.7585 -0.0079 20 1 15.6671 -1.5901 -1.2197 21 1 17.2650 -0.2250 -0.0095 22 1 15.6705 -1.5893 1.2052 23 6 5.7290 0.8796 -0.0053 24 6 4.3874 0.6255 0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.2446 3.8319 -0.0004 31 1 5.6502 4.2715 -0.0008 32 1 7.8800 3.3621 -0.0013 33 1 8.3546 0.7239 0.8889 34 1 8.3538 0.7241 -0.8911 35 1 10.8125 0.0703 -0.0021 36 1 12.4841 2.1641 -0.8947 37 1 12.4857 2.1657 0.8853 38 1 16.0574 2.0785 -0.0087 39 1 6.4328 0.0605 -0.0098 40 1 4.0299 -0.3936 -0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863358838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:49 Heat of formation + Delta-G solvation = -61.768626 kcal Electronic energy + Delta-G solvation = -21219.775583 eV Core-core repulsion = 17805.826701 eV Total energy + Delta-G solvation = -3413.948882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30400 -39.38227 -38.50325 -35.42010 -34.36296 -33.19578 -32.50703 -31.30388 -30.35368 -28.22415 -26.53138 -24.77265 -23.17534 -22.77973 -21.68152 -19.96714 -19.72786 -18.19492 -17.29188 -16.59520 -16.16127 -15.64680 -15.49593 -15.49509 -15.39171 -14.95180 -14.45350 -14.07756 -13.81495 -13.65993 -13.52140 -13.35857 -12.87350 -12.65770 -12.54252 -12.39140 -12.07684 -12.00817 -11.81224 -11.44021 -11.11743 -11.06883 -10.95951 -10.43067 -10.30740 -9.76498 -9.54898 -9.40979 -9.25408 -8.86649 -8.11648 -7.61889 -6.26800 -4.34922 0.72111 1.33553 2.38450 3.02326 3.07884 3.18655 3.24262 3.25434 3.75985 3.89561 3.94565 4.26518 4.56942 4.74452 4.77801 4.83832 5.00413 5.06453 5.09470 5.18092 5.24153 5.26580 5.28397 5.44053 5.52111 5.58033 5.64368 5.82726 5.89886 6.04392 6.17440 6.35623 6.57296 7.02221 7.14010 7.18510 7.35534 7.49525 7.50386 7.54918 7.83935 8.37741 8.59145 8.83371 9.31808 10.83176 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040977 B = 0.002185 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.150955 B =12813.988985 C =13466.088609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.171 4.171 3 C 0.401 3.599 4 O -0.472 6.472 5 C -0.251 4.251 6 C -0.006 4.006 7 C -0.214 4.214 8 C 0.262 3.738 9 N -0.716 5.716 10 C 0.096 3.904 11 C 0.492 3.508 12 O -0.553 6.553 13 N -0.704 5.704 14 C 0.249 3.751 15 C -0.548 4.548 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.906 3.094 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.220 4.220 24 C -0.017 4.017 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.415 0.585 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.394 0.606 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.268 0.732 39 H 0.128 0.872 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.846 -5.955 0.012 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.281 3.719 4 O -0.349 6.349 5 C -0.255 4.255 6 C -0.025 4.025 7 C -0.237 4.237 8 C 0.153 3.847 9 N -0.344 5.344 10 C -0.032 4.032 11 C 0.276 3.724 12 O -0.432 6.432 13 N -0.352 5.352 14 C 0.129 3.871 15 C -0.586 4.586 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.243 4.243 24 C -0.036 4.036 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.254 0.746 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.227 0.773 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.146 0.854 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.711 -4.657 0.011 23.183 hybrid contribution 1.082 -0.943 0.000 1.435 sum -21.629 -5.600 0.011 22.342 Atomic orbital electron populations 1.21583 0.93941 1.01552 1.02990 1.21980 0.98094 0.96371 1.04401 1.22269 0.88044 0.90803 0.70756 1.90502 1.58588 1.47779 1.38068 1.20115 0.94460 0.94227 1.16674 1.20831 0.94739 0.96059 0.90853 1.20362 0.92739 0.98181 1.12389 1.18158 0.83607 0.93943 0.89040 1.44542 1.01792 1.09856 1.78182 1.21249 0.88131 0.90260 1.03539 1.20287 0.86572 0.87443 0.78109 1.90670 1.85811 1.15356 1.51372 1.46423 1.08016 1.09330 1.71417 1.19175 0.74691 0.95271 0.97961 1.21155 0.91085 0.92502 1.53864 0.91812 1.24959 0.98371 0.96128 0.94523 1.69958 1.15118 1.18636 1.48412 0.86439 0.79810 0.81728 0.78740 1.20003 1.21014 1.20007 1.20416 0.96288 0.94807 1.12809 1.20880 0.92256 0.98277 0.92183 0.92253 0.92223 0.92230 0.88560 0.88557 0.85263 0.85494 0.74555 0.89067 0.89078 0.77328 0.95313 0.95307 0.92261 0.85376 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.20 37.16 0.34 -0.67 16 2 C -0.17 -1.16 5.02 -27.88 -0.14 -1.30 16 3 C 0.40 4.13 7.10 -30.87 -0.22 3.91 16 4 O -0.47 -6.33 15.96 5.53 0.09 -6.24 16 5 C -0.25 -2.61 5.87 -105.05 -0.62 -3.22 16 6 C -0.01 -0.06 9.54 -39.49 -0.38 -0.44 16 7 C -0.21 -2.36 9.82 -39.79 -0.39 -2.75 16 8 C 0.26 2.95 6.65 -83.86 -0.56 2.39 16 9 N -0.72 -8.83 5.67 -59.80 -0.34 -9.17 16 10 C 0.10 1.15 5.37 -5.19 -0.03 1.12 16 11 C 0.49 8.64 7.90 -10.99 -0.09 8.55 16 12 O -0.55 -11.97 15.67 5.56 0.09 -11.88 16 13 N -0.70 -13.30 5.55 -61.47 -0.34 -13.64 16 14 C 0.25 6.23 5.43 -5.20 -0.03 6.20 16 15 C -0.55 -14.15 9.28 -34.44 -0.32 -14.47 16 16 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.88 -25.24 13.29 55.43 0.74 -24.50 16 19 Si 0.91 20.11 29.54 -169.99 -5.02 15.08 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 C -0.22 -2.13 9.23 -39.80 -0.37 -2.50 16 24 C -0.02 -0.15 9.42 -39.49 -0.37 -0.52 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.13 1.38 7.64 -52.48 -0.40 0.98 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.42 5.62 7.44 -40.82 -0.30 5.32 16 33 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 34 H 0.09 0.90 7.92 -51.93 -0.41 0.49 16 35 H 0.39 6.13 8.32 -40.82 -0.34 5.79 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.13 1.02 6.69 -52.49 -0.35 0.67 16 40 H 0.13 0.73 7.03 -52.49 -0.37 0.36 16 LS Contribution 346.02 15.07 5.21 5.21 Total: -1.00 -32.11 346.02 -8.33 -40.44 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.49 Total: 6.77 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.26 Total: -2.07 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.06 Total: -47.31 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.18 Total: -18.13 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.11 -8.33 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863358838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.333 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds