Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46882 * 2 1 4 4 O 1.21313 * 119.99967 * 0.02562 * 3 2 1 5 5 C 1.46755 * 119.99781 * 179.97438 * 3 2 1 6 6 C 1.40104 * 120.09505 * 179.97438 * 5 3 2 7 7 C 1.36546 * 119.90709 * 180.02562 * 6 5 3 8 8 C 1.39318 * 120.08887 * 0.02562 * 7 6 5 9 9 N 1.38893 * 119.89796 * 179.97438 * 8 7 6 10 10 C 1.46506 * 119.99569 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46928 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00169 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47324 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47196 * 59.99759 * 19 17 15 21 21 H 1.48494 * 109.47285 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46819 * 300.00256 * 19 17 15 23 23 C 1.39305 * 120.19354 * 0.25322 * 8 7 6 24 24 C 1.36544 * 120.09939 * 359.48440 * 23 8 7 25 25 H 1.08998 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47396 * 299.99986 * 1 2 3 27 27 H 1.09000 * 109.47188 * 60.00103 * 1 2 3 28 28 H 1.08995 * 109.46967 * 239.99693 * 2 1 3 29 29 H 1.08995 * 109.46496 * 119.99852 * 2 1 3 30 30 H 1.08005 * 120.05092 * 0.02562 * 6 5 3 31 31 H 1.07996 * 119.95733 * 179.97438 * 7 6 5 32 32 H 0.96999 * 120.00351 * 359.97438 * 9 8 7 33 33 H 1.09004 * 109.47073 * 299.99689 * 10 9 8 34 34 H 1.09000 * 109.47212 * 59.99772 * 10 9 8 35 35 H 0.96996 * 119.99844 * 0.02562 * 13 11 10 36 36 H 1.09004 * 109.47042 * 300.00295 * 14 13 11 37 37 H 1.09004 * 109.46923 * 59.99881 * 14 13 11 38 38 H 0.97005 * 120.00032 * 179.97438 * 18 17 15 39 39 H 1.08002 * 119.95197 * 179.72468 * 23 8 7 40 40 H 1.07999 * 120.05561 * 180.23684 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2439 2.3429 0.0005 5 6 3.4752 1.6890 0.0006 6 6 3.9444 3.0091 0.0000 7 6 5.2876 3.2542 0.0000 8 6 6.1911 2.1938 0.0000 9 7 7.5567 2.4476 -0.0005 10 6 8.5087 1.3340 -0.0011 11 6 9.9150 1.8755 -0.0022 12 8 10.1035 3.0736 -0.0030 13 7 10.9633 1.0284 -0.0024 14 6 12.3305 1.5548 -0.0041 15 6 13.3098 0.4094 -0.0045 16 1 12.9498 -0.6088 -0.0032 17 6 14.6653 0.6613 -0.0066 18 7 15.1037 1.9012 -0.0076 19 14 15.8792 -0.7585 -0.0079 20 1 15.6671 -1.5901 -1.2197 21 1 17.2650 -0.2250 -0.0095 22 1 15.6705 -1.5893 1.2052 23 6 5.7290 0.8796 -0.0053 24 6 4.3874 0.6255 0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.2446 3.8319 -0.0004 31 1 5.6502 4.2715 -0.0008 32 1 7.8800 3.3621 -0.0013 33 1 8.3546 0.7239 0.8889 34 1 8.3538 0.7241 -0.8911 35 1 10.8125 0.0703 -0.0021 36 1 12.4841 2.1641 -0.8947 37 1 12.4857 2.1657 0.8853 38 1 16.0574 2.0785 -0.0087 39 1 6.4328 0.0605 -0.0098 40 1 4.0299 -0.3936 -0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863358838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = -83.973663 kcal Electronic energy + Delta-G solvation = -21220.738466 eV Core-core repulsion = 17805.826701 eV Total energy + Delta-G solvation = -3414.911764 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17806 -40.64347 -39.47632 -36.51632 -35.99577 -34.40777 -33.81785 -32.06087 -31.30986 -29.71177 -27.85800 -25.60035 -24.51939 -23.88781 -22.63688 -21.42626 -20.46505 -19.38238 -18.46844 -17.83676 -17.36914 -16.90876 -16.76540 -16.64322 -16.28524 -16.14350 -15.63118 -15.10274 -15.02599 -14.59679 -14.41518 -14.21600 -14.20709 -13.91069 -13.87013 -13.45163 -13.19328 -13.01888 -12.94849 -12.67667 -12.56461 -12.25004 -11.95437 -11.81419 -11.52557 -11.15544 -10.96317 -10.80381 -10.54146 -10.01336 -9.90943 -8.47234 -8.29773 -6.46388 -0.07088 0.57303 1.44555 1.47900 1.56128 1.59433 1.63136 2.00933 2.37762 2.68548 2.98821 3.05726 3.25566 3.78280 3.86866 4.02656 4.17271 4.30706 4.35386 4.38189 4.38606 4.47213 4.56905 4.70771 4.92130 5.04843 5.07722 5.11007 5.12725 5.21852 5.25232 5.37297 5.42552 5.44361 5.58679 5.62866 5.80204 5.82815 6.22724 6.54205 6.64355 6.75011 6.81268 7.21797 7.39080 8.81887 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040977 B = 0.002185 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.150955 B =12813.988985 C =13466.088609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.166 4.166 3 C 0.398 3.602 4 O -0.515 6.515 5 C -0.263 4.263 6 C -0.022 4.022 7 C -0.226 4.226 8 C 0.249 3.751 9 N -0.728 5.728 10 C 0.113 3.887 11 C 0.490 3.510 12 O -0.600 6.600 13 N -0.699 5.699 14 C 0.265 3.735 15 C -0.556 4.556 16 H 0.088 0.912 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.984 3.016 20 H -0.261 1.261 21 H -0.289 1.289 22 H -0.261 1.261 23 C -0.220 4.220 24 C -0.005 4.005 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.406 0.594 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.414 0.586 36 H -0.011 1.011 37 H -0.011 1.011 38 H 0.268 0.732 39 H 0.155 0.845 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.645 -10.203 0.011 25.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.203 4.203 3 C 0.281 3.719 4 O -0.395 6.395 5 C -0.266 4.266 6 C -0.041 4.041 7 C -0.248 4.248 8 C 0.142 3.858 9 N -0.355 5.355 10 C -0.014 4.014 11 C 0.277 3.723 12 O -0.482 6.482 13 N -0.349 5.349 14 C 0.142 3.858 15 C -0.594 4.594 16 H 0.106 0.894 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.807 3.193 20 H -0.186 1.186 21 H -0.215 1.215 22 H -0.186 1.186 23 C -0.242 4.242 24 C -0.024 4.024 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.243 0.757 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.250 0.750 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.077 0.923 39 H 0.172 0.828 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -23.567 -8.967 0.011 25.215 hybrid contribution 1.236 0.450 0.000 1.316 sum -22.331 -8.517 0.011 23.900 Atomic orbital electron populations 1.21602 0.94502 1.02576 1.01563 1.22052 0.97602 0.93915 1.06705 1.22871 0.87745 0.92159 0.69140 1.90494 1.59433 1.49406 1.40206 1.20368 0.95169 0.94398 1.16652 1.20895 0.94667 0.96787 0.91752 1.20424 0.92922 0.98557 1.12918 1.18315 0.82868 0.94870 0.89773 1.44570 1.02304 1.09439 1.79204 1.21263 0.83510 0.90098 1.06516 1.21292 0.88493 0.86594 0.75965 1.90655 1.86869 1.17730 1.52930 1.46079 1.06164 1.10608 1.72010 1.18570 0.78273 0.94657 0.94267 1.21603 0.91388 0.93526 1.52899 0.89406 1.26065 1.00808 0.98902 0.93914 1.70128 1.15519 1.21393 1.49929 0.85214 0.76480 0.78028 0.79558 1.18573 1.21459 1.18584 1.20763 0.97230 0.94473 1.11740 1.21252 0.91482 0.99495 0.90131 0.89896 0.93723 0.93730 0.85987 0.85985 0.86181 0.85707 0.75709 0.85824 0.85834 0.74962 0.99317 0.99312 0.92310 0.82759 0.81460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.20 71.98 0.66 -1.12 16 2 C -0.17 -1.70 5.02 29.85 0.15 -1.55 16 3 C 0.40 7.65 7.10 27.91 0.20 7.85 16 4 O -0.52 -14.04 15.96 -3.13 -0.05 -14.09 16 5 C -0.26 -4.99 5.87 -20.14 -0.12 -5.11 16 6 C -0.02 -0.49 9.54 22.33 0.21 -0.27 16 7 C -0.23 -4.98 9.82 22.13 0.22 -4.77 16 8 C 0.25 5.18 6.65 38.54 0.26 5.43 16 9 N -0.73 -16.91 5.67 -343.10 -1.95 -18.86 16 10 C 0.11 2.36 5.37 85.63 0.46 2.82 16 11 C 0.49 16.89 7.90 87.66 0.69 17.58 16 12 O -0.60 -26.82 15.67 -3.04 -0.05 -26.87 16 13 N -0.70 -25.94 5.55 -466.78 -2.59 -28.53 16 14 C 0.27 13.67 5.43 85.63 0.46 14.13 16 15 C -0.56 -28.58 9.28 25.60 0.24 -28.34 16 16 H 0.09 3.98 7.60 -2.91 -0.02 3.96 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -54.61 13.29 21.45 0.28 -54.32 16 19 Si 0.98 40.57 29.54 68.60 2.03 42.59 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 21 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 C -0.22 -3.37 9.23 22.13 0.20 -3.16 16 24 C 0.00 -0.07 9.42 22.33 0.21 0.14 16 25 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 27 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 28 H 0.12 0.68 8.08 -2.39 -0.02 0.66 16 29 H 0.12 0.68 8.08 -2.39 -0.02 0.66 16 30 H 0.12 2.77 7.64 -2.91 -0.02 2.75 16 31 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.41 11.11 7.44 -92.71 -0.69 10.42 16 33 H 0.12 1.87 7.94 -2.38 -0.02 1.85 16 34 H 0.12 1.87 7.92 -2.39 -0.02 1.85 16 35 H 0.41 11.86 8.32 -92.71 -0.77 11.09 16 36 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 37 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 39 H 0.15 1.54 6.69 -2.91 -0.02 1.52 16 40 H 0.17 0.88 7.03 -2.91 -0.02 0.86 16 Total: -1.00 -74.76 346.02 1.60 -73.16 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.39 Total: 22.66 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 4.31 Total: 4.25 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -4.25 Total: -101.71 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.10 Total: -40.96 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Total: -74.76 1.60 -73.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863358838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.811 kcal (2) G-P(sol) polarization free energy of solvation -74.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds