Wall clock time and date at job start Tue Mar 31 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46861 * 2 1 4 4 O 1.21315 * 120.00449 * 0.02562 * 3 2 1 5 5 C 1.46650 * 119.99564 * 180.02562 * 3 2 1 6 6 C 1.40060 * 120.24469 * 5.74168 * 5 3 2 7 7 C 1.37624 * 119.90086 * 179.97438 * 6 5 3 8 8 C 1.38698 * 120.39431 * 0.02562 * 7 6 5 9 9 C 1.37938 * 120.49521 * 0.02562 * 8 7 6 10 10 C 1.38966 * 120.08312 * 359.96302 * 9 8 7 11 11 N 1.38694 * 120.19130 * 179.97438 * 10 9 8 12 12 C 1.46496 * 120.00407 * 354.47378 * 11 10 9 13 13 C 1.50703 * 109.47709 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99637 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00564 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00234 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47424 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00108 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99755 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00310 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47207 * 89.99744 * 21 19 17 23 23 H 1.48496 * 109.47262 * 210.00281 * 21 19 17 24 24 H 1.48498 * 109.46914 * 329.99946 * 21 19 17 25 25 H 1.09002 * 109.47056 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47368 * 299.99932 * 1 2 3 27 27 H 1.08998 * 109.47475 * 59.99525 * 1 2 3 28 28 H 1.08999 * 109.46821 * 240.00372 * 2 1 3 29 29 H 1.08994 * 109.47403 * 119.99989 * 2 1 3 30 30 H 1.07999 * 120.05005 * 0.25319 * 6 5 3 31 31 H 1.08000 * 119.80440 * 179.97438 * 7 6 5 32 32 H 1.07999 * 119.75504 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.96163 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00135 * 174.48339 * 11 10 9 35 35 H 1.08996 * 109.47535 * 300.00432 * 12 11 10 36 36 H 1.09003 * 109.47479 * 60.00397 * 12 11 10 37 37 H 0.96999 * 119.99654 * 0.02562 * 15 13 12 38 38 H 1.08996 * 109.47421 * 300.00192 * 16 15 13 39 39 H 1.08997 * 109.46937 * 60.00224 * 16 15 13 40 40 H 0.97005 * 120.00190 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2440 2.3430 0.0005 5 6 3.4741 1.6888 -0.0006 6 6 4.3876 0.6341 -0.1222 7 6 5.7391 0.8936 -0.1224 8 6 6.2038 2.1949 -0.0023 9 6 5.3187 3.2458 0.1195 10 6 3.9497 3.0069 0.1218 11 7 3.0577 4.0618 0.2447 12 6 3.5556 5.4169 0.4936 13 6 2.3923 6.3706 0.5855 14 8 1.2589 5.9588 0.4562 15 7 2.6114 7.6811 0.8113 16 6 1.4806 8.6082 0.9000 17 6 1.9928 10.0022 1.1563 18 1 3.0545 10.1798 1.2438 19 6 1.1060 11.0507 1.2790 20 7 1.5530 12.2673 1.5021 21 14 -0.7304 10.7435 1.1283 22 1 -1.2925 10.4367 2.4681 23 1 -1.3915 11.9546 0.5795 24 1 -0.9669 9.5947 0.2174 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 4.0318 -0.3809 -0.2201 31 1 6.4421 0.0791 -0.2158 32 1 7.2666 2.3868 -0.0033 33 1 5.6899 4.2557 0.2129 34 1 2.1041 3.9024 0.1658 35 1 4.1129 5.4329 1.4302 36 1 4.2101 5.7195 -0.3238 37 1 3.5180 8.0105 0.9143 38 1 0.9231 8.5920 -0.0364 39 1 0.8263 8.3060 1.7177 40 1 0.9292 13.0051 1.5880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863365879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:51 Heat of formation + Delta-G solvation = -49.829902 kcal Electronic energy + Delta-G solvation = -22139.940573 eV Core-core repulsion = 18726.509393 eV Total energy + Delta-G solvation = -3413.431180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54099 -39.15614 -38.28613 -35.54627 -34.36765 -33.09388 -32.43862 -31.36559 -30.18809 -28.36659 -26.47710 -25.19025 -23.32611 -22.18024 -21.38042 -20.24222 -19.66592 -17.87411 -17.31764 -16.78655 -16.16664 -15.71591 -15.64524 -15.40754 -15.29469 -14.85970 -14.29369 -14.23543 -13.89114 -13.74810 -13.49022 -13.24860 -12.76862 -12.56228 -12.43126 -12.35516 -12.13929 -11.97833 -11.89002 -11.39482 -11.34041 -11.07194 -10.80629 -10.31746 -10.01013 -9.61664 -9.55256 -9.40947 -9.15042 -8.82695 -8.27709 -7.56322 -6.25316 -4.28230 0.64680 1.46922 2.35430 3.03277 3.19768 3.25346 3.32339 3.40294 3.73756 3.90923 3.98801 4.30457 4.61644 4.79127 4.81416 4.90569 4.99939 5.09499 5.09995 5.18103 5.23959 5.28339 5.32764 5.44620 5.55625 5.61505 5.73981 5.75780 6.00967 6.07111 6.17661 6.37409 6.61076 6.73276 7.00647 7.08054 7.18996 7.31533 7.42067 7.98512 8.06645 8.41307 8.66473 8.78961 9.34213 10.86468 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.003290 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.442442 B = 8508.574576 C = 9789.097324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.165 4.165 3 C 0.396 3.604 4 O -0.459 6.459 5 C -0.265 4.265 6 C -0.022 4.022 7 C -0.205 4.205 8 C -0.035 4.035 9 C -0.220 4.220 10 C 0.282 3.718 11 N -0.707 5.707 12 C 0.092 3.908 13 C 0.493 3.507 14 O -0.546 6.546 15 N -0.699 5.699 16 C 0.220 3.780 17 C -0.545 4.545 18 H 0.081 0.919 19 C 0.079 3.921 20 N -0.891 5.891 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.261 1.261 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.429 0.571 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.027 0.973 39 H 0.022 0.978 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.769 -25.510 -3.106 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.202 4.202 3 C 0.277 3.723 4 O -0.336 6.336 5 C -0.272 4.272 6 C -0.040 4.040 7 C -0.225 4.225 8 C -0.054 4.054 9 C -0.242 4.242 10 C 0.169 3.831 11 N -0.345 5.345 12 C -0.037 4.037 13 C 0.276 3.724 14 O -0.424 6.424 15 N -0.348 5.348 16 C 0.098 3.902 17 C -0.583 4.583 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.528 5.528 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.185 1.185 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.281 0.719 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.233 0.767 38 H 0.045 0.955 39 H 0.040 0.960 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.414 -24.861 -3.129 26.131 hybrid contribution -0.541 0.183 0.019 0.572 sum 6.873 -24.678 -3.110 25.805 Atomic orbital electron populations 1.21601 0.93695 1.01572 1.03386 1.21914 0.98292 0.95722 1.04279 1.22310 0.87654 0.91283 0.71084 1.90310 1.58197 1.46699 1.38348 1.19838 0.94913 0.92437 1.19998 1.21123 0.92733 0.97493 0.92689 1.20788 0.95281 0.96836 1.09602 1.21109 0.99295 0.92330 0.92657 1.20769 0.91006 1.00241 1.12207 1.18059 0.89981 0.86781 0.88273 1.45488 1.11607 1.03748 1.73683 1.21249 0.96252 0.83277 1.02902 1.20336 0.90124 0.83787 0.78104 1.90702 1.23597 1.77252 1.50864 1.46101 1.12023 1.06528 1.70150 1.19542 0.85340 0.88309 0.96982 1.21064 0.95944 0.89621 1.51691 0.90148 1.24785 0.99220 0.94747 0.93801 1.69876 1.35418 0.99572 1.47954 0.86819 0.85050 0.78428 0.79428 1.19796 1.20812 1.18510 0.92218 0.92004 0.92032 0.88587 0.88528 0.85490 0.86043 0.85814 0.85385 0.71942 0.89055 0.89059 0.76742 0.95516 0.95982 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.20 37.16 0.34 -0.99 16 2 C -0.16 -1.37 5.11 -27.88 -0.14 -1.51 16 3 C 0.40 4.95 7.09 -30.91 -0.22 4.73 16 4 O -0.46 -7.63 13.28 5.53 0.07 -7.56 16 5 C -0.27 -3.16 5.88 -104.91 -0.62 -3.77 16 6 C -0.02 -0.19 9.46 -39.12 -0.37 -0.56 16 7 C -0.20 -1.67 10.02 -39.64 -0.40 -2.07 16 8 C -0.03 -0.30 10.02 -39.52 -0.40 -0.70 16 9 C -0.22 -2.35 9.30 -39.42 -0.37 -2.71 16 10 C 0.28 3.72 6.66 -83.57 -0.56 3.16 16 11 N -0.71 -10.98 5.55 -59.58 -0.33 -11.31 16 12 C 0.09 1.29 5.42 -5.19 -0.03 1.26 16 13 C 0.49 9.44 7.90 -10.99 -0.09 9.36 16 14 O -0.55 -12.81 15.67 5.56 0.09 -12.72 16 15 N -0.70 -13.89 5.55 -61.47 -0.34 -14.24 16 16 C 0.22 5.41 4.50 -5.19 -0.02 5.39 16 17 C -0.55 -14.86 9.83 -34.44 -0.34 -15.20 16 18 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 20 N -0.89 -26.38 13.96 55.43 0.77 -25.60 16 21 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.65 8.10 -51.92 -0.42 0.23 16 27 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.10 0.59 7.91 -51.93 -0.41 0.18 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.13 0.73 6.99 -52.49 -0.37 0.36 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 1.18 6.72 -52.49 -0.35 0.83 16 34 H 0.43 7.85 3.96 -40.94 -0.16 7.69 16 35 H 0.09 1.07 8.12 -51.93 -0.42 0.65 16 36 H 0.09 1.06 7.73 -51.93 -0.40 0.66 16 37 H 0.40 6.74 8.32 -40.82 -0.34 6.40 16 38 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 39 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -34.21 337.34 -7.95 -42.16 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -5.33 Total: 8.79 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.30 Total: -1.49 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.10 Total: -51.15 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.16 Total: -20.28 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.21 -7.95 -42.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863365879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.670 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds