Wall clock time and date at job start Tue Mar 31 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46861 * 2 1 4 4 O 1.21315 * 120.00449 * 0.02562 * 3 2 1 5 5 C 1.46650 * 119.99564 * 180.02562 * 3 2 1 6 6 C 1.40060 * 120.24469 * 5.74168 * 5 3 2 7 7 C 1.37624 * 119.90086 * 179.97438 * 6 5 3 8 8 C 1.38698 * 120.39431 * 0.02562 * 7 6 5 9 9 C 1.37938 * 120.49521 * 0.02562 * 8 7 6 10 10 C 1.38966 * 120.08312 * 359.96302 * 9 8 7 11 11 N 1.38694 * 120.19130 * 179.97438 * 10 9 8 12 12 C 1.46496 * 120.00407 * 354.47378 * 11 10 9 13 13 C 1.50703 * 109.47709 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99637 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00564 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00234 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47424 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99690 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00108 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99755 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00310 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47207 * 89.99744 * 21 19 17 23 23 H 1.48496 * 109.47262 * 210.00281 * 21 19 17 24 24 H 1.48498 * 109.46914 * 329.99946 * 21 19 17 25 25 H 1.09002 * 109.47056 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47368 * 299.99932 * 1 2 3 27 27 H 1.08998 * 109.47475 * 59.99525 * 1 2 3 28 28 H 1.08999 * 109.46821 * 240.00372 * 2 1 3 29 29 H 1.08994 * 109.47403 * 119.99989 * 2 1 3 30 30 H 1.07999 * 120.05005 * 0.25319 * 6 5 3 31 31 H 1.08000 * 119.80440 * 179.97438 * 7 6 5 32 32 H 1.07999 * 119.75504 * 179.97438 * 8 7 6 33 33 H 1.07995 * 119.96163 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00135 * 174.48339 * 11 10 9 35 35 H 1.08996 * 109.47535 * 300.00432 * 12 11 10 36 36 H 1.09003 * 109.47479 * 60.00397 * 12 11 10 37 37 H 0.96999 * 119.99654 * 0.02562 * 15 13 12 38 38 H 1.08996 * 109.47421 * 300.00192 * 16 15 13 39 39 H 1.08997 * 109.46937 * 60.00224 * 16 15 13 40 40 H 0.97005 * 120.00190 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2440 2.3430 0.0005 5 6 3.4741 1.6888 -0.0006 6 6 4.3876 0.6341 -0.1222 7 6 5.7391 0.8936 -0.1224 8 6 6.2038 2.1949 -0.0023 9 6 5.3187 3.2458 0.1195 10 6 3.9497 3.0069 0.1218 11 7 3.0577 4.0618 0.2447 12 6 3.5556 5.4169 0.4936 13 6 2.3923 6.3706 0.5855 14 8 1.2589 5.9588 0.4562 15 7 2.6114 7.6811 0.8113 16 6 1.4806 8.6082 0.9000 17 6 1.9928 10.0022 1.1563 18 1 3.0545 10.1798 1.2438 19 6 1.1060 11.0507 1.2790 20 7 1.5530 12.2673 1.5021 21 14 -0.7304 10.7435 1.1283 22 1 -1.2925 10.4367 2.4681 23 1 -1.3915 11.9546 0.5795 24 1 -0.9669 9.5947 0.2174 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 4.0318 -0.3809 -0.2201 31 1 6.4421 0.0791 -0.2158 32 1 7.2666 2.3868 -0.0033 33 1 5.6899 4.2557 0.2129 34 1 2.1041 3.9024 0.1658 35 1 4.1129 5.4329 1.4302 36 1 4.2101 5.7195 -0.3238 37 1 3.5180 8.0105 0.9143 38 1 0.9231 8.5920 -0.0364 39 1 0.8263 8.3060 1.7177 40 1 0.9292 13.0051 1.5880 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863365879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:51 Heat of formation + Delta-G solvation = -74.270264 kcal Electronic energy + Delta-G solvation = -22141.000386 eV Core-core repulsion = 18726.509393 eV Total energy + Delta-G solvation = -3414.490993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47525 -40.64577 -39.17401 -36.65657 -36.09369 -34.49945 -33.86971 -32.12815 -31.29605 -29.95987 -27.70354 -26.03208 -24.38331 -23.73568 -22.30938 -21.67834 -20.66962 -19.33245 -18.43125 -18.12543 -17.39586 -17.04394 -16.88890 -16.58767 -16.41103 -16.12074 -15.60785 -15.14254 -15.13345 -14.95216 -14.58189 -14.42421 -14.33882 -14.03605 -13.91582 -13.22037 -13.14825 -13.11898 -12.79513 -12.75667 -12.59811 -12.06879 -12.01543 -11.98654 -11.70828 -11.17526 -11.07793 -10.96434 -10.48140 -10.07696 -9.87714 -8.46054 -8.44255 -6.51289 -0.13106 0.72992 1.28414 1.31268 1.43419 1.50431 1.54644 2.00206 2.23981 2.66727 2.90982 3.00195 3.16122 3.70273 3.91154 4.07158 4.20425 4.21066 4.26300 4.27687 4.36113 4.54014 4.57059 4.67877 4.72896 4.89507 4.94809 4.96622 5.04081 5.10163 5.19599 5.25990 5.32982 5.38011 5.51490 5.69166 5.92037 6.03111 6.31107 6.47870 6.50863 6.69487 6.92162 7.08657 7.25683 8.70288 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021232 B = 0.003290 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.442442 B = 8508.574576 C = 9789.097324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.158 4.158 3 C 0.386 3.614 4 O -0.513 6.513 5 C -0.287 4.287 6 C -0.016 4.016 7 C -0.199 4.199 8 C -0.032 4.032 9 C -0.231 4.231 10 C 0.250 3.750 11 N -0.732 5.732 12 C 0.106 3.894 13 C 0.492 3.508 14 O -0.592 6.592 15 N -0.695 5.695 16 C 0.231 3.769 17 C -0.546 4.546 18 H 0.065 0.935 19 C 0.029 3.971 20 N -0.928 5.928 21 Si 0.934 3.066 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.265 1.265 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.162 0.838 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.138 0.862 34 H 0.414 0.586 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.414 0.586 38 H 0.012 0.988 39 H 0.011 0.989 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.750 -28.498 -3.366 30.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.271 3.729 4 O -0.394 6.394 5 C -0.293 4.293 6 C -0.035 4.035 7 C -0.219 4.219 8 C -0.051 4.051 9 C -0.254 4.254 10 C 0.141 3.859 11 N -0.371 5.371 12 C -0.022 4.022 13 C 0.278 3.722 14 O -0.473 6.473 15 N -0.346 5.346 16 C 0.107 3.893 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.171 4.171 20 N -0.567 5.567 21 Si 0.758 3.242 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.189 1.189 25 H 0.106 0.894 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.179 0.821 31 H 0.172 0.828 32 H 0.171 0.829 33 H 0.156 0.844 34 H 0.262 0.738 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.251 0.749 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.481 -27.889 -3.387 29.650 hybrid contribution -1.009 0.996 0.087 1.421 sum 8.472 -26.892 -3.300 28.388 Atomic orbital electron populations 1.21610 0.94781 1.02648 1.01327 1.21991 0.97318 0.93336 1.06830 1.23090 0.87969 0.92575 0.69236 1.90302 1.59424 1.48516 1.41132 1.20124 0.95213 0.93059 1.20942 1.21518 0.92628 0.98157 0.91175 1.21264 0.95582 0.97580 1.07450 1.21537 1.00521 0.92109 0.90907 1.21004 0.90197 1.01633 1.12539 1.18474 0.90738 0.86820 0.89913 1.45542 1.11337 1.04541 1.75721 1.21242 0.93801 0.81813 1.05307 1.21208 0.91025 0.83724 0.76210 1.90681 1.26064 1.77960 1.52590 1.45886 1.11623 1.06561 1.70485 1.19132 0.86519 0.87979 0.95645 1.21255 0.95360 0.90900 1.50910 0.91728 1.25542 1.03363 0.94594 0.93639 1.69966 1.37019 1.00449 1.49229 0.85909 0.80299 0.78419 0.79572 1.19036 1.19548 1.18940 0.89392 0.94266 0.94024 0.85544 0.85842 0.82100 0.82815 0.82908 0.84390 0.73756 0.86395 0.86288 0.74936 0.97017 0.97143 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.20 71.98 0.66 -1.96 16 2 C -0.16 -2.31 5.11 29.85 0.15 -2.16 16 3 C 0.39 9.68 7.09 27.88 0.20 9.87 16 4 O -0.51 -18.18 13.28 -3.14 -0.04 -18.22 16 5 C -0.29 -6.48 5.88 -20.05 -0.12 -6.60 16 6 C -0.02 -0.23 9.46 22.57 0.21 -0.02 16 7 C -0.20 -2.35 10.02 22.23 0.22 -2.13 16 8 C -0.03 -0.43 10.02 22.31 0.22 -0.21 16 9 C -0.23 -4.44 9.30 22.37 0.21 -4.23 16 10 C 0.25 6.43 6.66 38.82 0.26 6.69 16 11 N -0.73 -23.17 5.55 -342.41 -1.90 -25.07 16 12 C 0.11 2.92 5.42 85.63 0.46 3.39 16 13 C 0.49 19.16 7.90 87.66 0.69 19.86 16 14 O -0.59 -28.92 15.67 -3.04 -0.05 -28.97 16 15 N -0.70 -27.88 5.55 -466.80 -2.59 -30.47 16 16 C 0.23 11.56 4.50 85.63 0.38 11.95 16 17 C -0.55 -30.26 9.83 25.60 0.25 -30.00 16 18 H 0.06 3.70 7.84 -2.91 -0.02 3.68 16 19 C 0.03 1.67 5.47 84.65 0.46 2.14 16 20 N -0.93 -55.50 13.96 21.44 0.30 -55.20 16 21 Si 0.93 44.90 27.47 68.60 1.88 46.78 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.26 -12.82 6.54 99.48 0.65 -12.17 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.86 8.10 -2.38 -0.02 0.84 16 27 H 0.04 0.89 8.10 -2.39 -0.02 0.87 16 28 H 0.13 1.10 7.91 -2.39 -0.02 1.08 16 29 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.16 1.03 6.99 -2.91 -0.02 1.01 16 31 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 32 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.14 2.22 6.72 -2.91 -0.02 2.20 16 34 H 0.41 16.00 3.96 -94.55 -0.37 15.63 16 35 H 0.12 2.59 8.12 -2.39 -0.02 2.57 16 36 H 0.12 2.58 7.73 -2.39 -0.02 2.56 16 37 H 0.41 13.89 8.32 -92.71 -0.77 13.11 16 38 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 39 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 40 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -78.57 337.34 1.75 -76.82 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.13 Total: 27.75 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.28 Total: 6.59 kcal Atomic # 7 Polarization: -106.55 SS G_CDS: -4.19 Total: -110.74 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -0.09 Total: -47.20 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -78.57 1.75 -76.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863365879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.549 kcal (2) G-P(sol) polarization free energy of solvation -78.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds