Wall clock time and date at job start Tue Mar 31 2020 06:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46494 * 109.46777 * 65.00298 * 13 2 1 15 15 C 1.39929 * 119.99953 * 179.97438 * 14 13 2 16 16 C 1.38889 * 119.97396 * 359.72787 * 15 14 13 17 17 C 1.38270 * 120.17396 * 179.76466 * 16 15 14 18 18 C 1.38382 * 119.97152 * 0.47787 * 17 16 15 19 19 C 1.39396 * 119.99489 * 359.80494 * 18 17 16 20 20 C 1.38472 * 120.04851 * 359.94395 * 19 18 17 21 21 N 1.40212 * 119.27336 * 179.97438 * 19 18 17 22 22 C 1.35078 * 119.00826 * 15.53392 * 21 19 18 23 23 O 1.21294 * 120.13420 * 181.62205 * 22 21 19 24 24 C 1.50758 * 119.73275 * 1.64120 * 22 21 19 25 25 O 1.36114 * 120.57576 * 179.86950 * 18 17 16 26 26 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 28 28 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 29 29 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 30 30 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 31 31 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 32 32 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 33 33 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 34 34 H 0.96998 * 120.00823 * 0.02562 * 14 13 2 35 35 H 1.07999 * 119.91420 * 0.02562 * 16 15 14 36 36 H 1.08001 * 120.01330 * 180.24721 * 17 16 15 37 37 H 1.07996 * 120.11967 * 179.97438 * 20 19 18 38 38 H 0.97003 * 120.49440 * 195.53746 * 21 19 18 39 39 H 1.09000 * 109.45067 * 208.61765 * 24 22 21 40 40 H 1.09004 * 109.41871 * 88.69213 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4423 15 6 2.0096 -0.4306 -3.7126 16 6 2.7364 -1.6071 -3.8413 17 6 3.0873 -2.0736 -5.0948 18 6 2.7226 -1.3621 -6.2243 19 6 1.9982 -0.1778 -6.0982 20 6 1.6421 0.2869 -4.8433 21 7 1.6371 0.5312 -7.2527 22 6 1.7117 -0.0871 -8.4513 23 8 1.4325 0.5159 -9.4660 24 6 2.1432 -1.5299 -8.5228 25 8 3.0638 -1.8086 -7.4640 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2953 31 1 2.9286 -2.0221 3.0617 32 1 3.1263 -0.7997 -1.2054 33 1 1.6053 -1.7200 -1.2950 34 1 1.1490 0.8592 -2.3518 35 1 3.0245 -2.1613 -2.9603 36 1 3.6490 -2.9909 -5.1921 37 1 1.0813 1.2045 -4.7443 38 1 1.3381 1.4520 -7.1915 39 1 2.6262 -1.7172 -9.4818 40 1 1.2698 -2.1746 -8.4242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876953335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:23 Heat of formation + Delta-G solvation = -60.398344 kcal Electronic energy + Delta-G solvation = -22044.662583 eV Core-core repulsion = 18630.773121 eV Total energy + Delta-G solvation = -3413.889462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55131 -39.29126 -38.18888 -36.66611 -35.38981 -33.84057 -32.15142 -30.24537 -29.44024 -27.54234 -26.62678 -25.80563 -23.49264 -23.19017 -22.41039 -19.92043 -19.67492 -18.99148 -18.00848 -17.28313 -16.83046 -16.57989 -16.07758 -15.43625 -15.08797 -14.79105 -14.71546 -14.14886 -13.86694 -13.81878 -13.57985 -13.51999 -13.08195 -12.78903 -12.70312 -11.96186 -11.78160 -11.57323 -11.36643 -11.20343 -11.11580 -10.78110 -10.49124 -10.43227 -10.17193 -10.08066 -9.70995 -9.52172 -8.60591 -8.51686 -8.38679 -7.25767 -6.41467 -4.11153 0.92704 1.29037 2.06203 2.46973 3.10699 3.39344 3.42355 3.48816 3.57989 3.64397 3.78264 4.49133 4.49813 4.62738 4.79719 5.03963 5.09482 5.20107 5.31545 5.35017 5.48161 5.55381 5.65160 5.72031 5.88743 6.01347 6.13929 6.16160 6.22286 6.24119 6.40266 6.54888 6.62982 6.77718 6.87584 7.10043 7.25101 7.31960 7.41368 7.45223 7.73676 8.13372 8.39806 8.82428 9.60414 10.99079 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045485 B = 0.002516 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.444436 B =11127.112228 C =11587.822525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 H 0.064 0.936 4 C 0.017 3.983 5 C -0.598 4.598 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.913 5.913 9 Si 1.070 2.930 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.284 1.284 13 C 0.123 3.877 14 N -0.735 5.735 15 C 0.239 3.761 16 C -0.190 4.190 17 C -0.052 4.052 18 C 0.002 3.998 19 C 0.141 3.859 20 C -0.209 4.209 21 N -0.658 5.658 22 C 0.492 3.508 23 O -0.520 6.520 24 C 0.051 3.949 25 O -0.304 6.304 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.008 0.992 30 H 0.010 0.990 31 H 0.269 0.731 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.400 0.600 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.414 0.586 39 H 0.141 0.859 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.839 0.199 -20.685 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.108 4.108 3 H 0.082 0.918 4 C -0.021 4.021 5 C -0.636 4.636 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.549 5.549 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.210 1.210 13 C 0.000 4.000 14 N -0.362 5.362 15 C 0.131 3.869 16 C -0.213 4.213 17 C -0.072 4.072 18 C -0.045 4.045 19 C 0.045 3.955 20 C -0.235 4.235 21 N -0.305 5.305 22 C 0.280 3.720 23 O -0.395 6.395 24 C -0.028 4.028 25 O -0.219 6.219 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.235 0.765 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.253 0.747 39 H 0.159 0.841 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.636 0.142 -19.536 19.605 hybrid contribution -0.651 0.949 -1.567 1.944 sum -2.287 1.090 -21.104 21.255 Atomic orbital electron populations 1.21718 0.95661 1.01148 1.00388 1.21303 0.95808 0.99765 0.93921 0.91782 1.19212 0.95525 0.95628 0.91726 1.22007 1.39050 1.10377 0.92176 0.93162 1.25821 0.94631 0.97083 1.01407 1.70760 1.36005 1.14581 1.33597 0.83529 0.75974 0.75272 0.75414 1.21483 1.21530 1.20999 1.21696 0.99225 0.95251 0.83827 1.45056 1.60834 1.27961 1.02383 1.17607 0.91920 0.92111 0.85212 1.20585 1.05291 0.97957 0.97482 1.20254 0.99120 0.98575 0.89229 1.18249 1.06296 0.94570 0.85367 1.17650 0.98894 0.92487 0.86464 1.19894 1.10459 1.03897 0.89249 1.43750 1.65143 1.16272 1.05318 1.21655 0.76731 0.90873 0.82783 1.90802 1.48150 1.66965 1.33592 1.23096 0.95856 0.91102 0.92703 1.86281 1.44295 1.77059 1.14224 0.93488 0.91590 0.94968 0.97332 0.97176 0.92064 0.92302 0.92346 0.76538 0.84728 0.84496 0.85333 0.74703 0.84142 0.88648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.88 37.16 0.33 -1.90 16 2 C -0.09 -1.61 2.37 -90.62 -0.22 -1.82 16 3 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.02 0.39 3.76 -27.88 -0.10 0.28 16 5 C -0.60 -16.00 8.41 -34.44 -0.29 -16.29 16 6 H 0.05 1.32 7.06 -52.49 -0.37 0.95 16 7 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 8 N -0.91 -27.12 13.65 55.43 0.76 -26.36 16 9 Si 1.07 24.59 29.90 -169.99 -5.08 19.50 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.12 1.82 4.30 -4.04 -0.02 1.80 16 14 N -0.74 -9.14 5.47 -58.58 -0.32 -9.46 16 15 C 0.24 2.82 6.66 -83.69 -0.56 2.26 16 16 C -0.19 -2.17 9.31 -39.33 -0.37 -2.54 16 17 C -0.05 -0.55 9.99 -39.52 -0.39 -0.95 16 18 C 0.00 0.03 6.44 -39.10 -0.25 -0.22 16 19 C 0.14 1.52 6.54 -83.51 -0.55 0.97 16 20 C -0.21 -2.21 9.80 -39.26 -0.38 -2.60 16 21 N -0.66 -6.48 5.47 -9.67 -0.05 -6.54 16 22 C 0.49 5.24 7.94 -10.82 -0.09 5.15 16 23 O -0.52 -6.97 17.95 5.55 0.10 -6.87 16 24 C 0.05 0.42 7.17 36.03 0.26 0.68 16 25 O -0.30 -3.19 10.46 -20.10 -0.21 -3.40 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.24 6.95 -51.93 -0.36 0.88 16 28 H 0.03 0.45 7.18 -51.93 -0.37 0.07 16 29 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 30 H 0.01 0.25 8.00 -51.93 -0.42 -0.17 16 31 H 0.27 7.90 7.22 -40.82 -0.29 7.61 16 32 H 0.06 0.89 7.93 -51.93 -0.41 0.47 16 33 H 0.06 0.86 7.96 -51.93 -0.41 0.45 16 34 H 0.40 4.56 7.67 -40.82 -0.31 4.25 16 35 H 0.13 1.50 6.71 -52.49 -0.35 1.15 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.41 3.40 8.89 -40.82 -0.36 3.04 16 39 H 0.14 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -31.36 333.51 -7.92 -39.29 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.42 Total: 3.68 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -2.72 Total: -14.86 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.38 Total: -42.36 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.11 Total: -10.27 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.08 Total: 19.50 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.36 -7.92 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876953335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.113 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds