Wall clock time and date at job start Tue Mar 31 2020 06:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46494 * 109.46777 * 65.00298 * 13 2 1 15 15 C 1.39929 * 119.99953 * 179.97438 * 14 13 2 16 16 C 1.38889 * 119.97396 * 359.72787 * 15 14 13 17 17 C 1.38270 * 120.17396 * 179.76466 * 16 15 14 18 18 C 1.38382 * 119.97152 * 0.47787 * 17 16 15 19 19 C 1.39396 * 119.99489 * 359.80494 * 18 17 16 20 20 C 1.38472 * 120.04851 * 359.94395 * 19 18 17 21 21 N 1.40212 * 119.27336 * 179.97438 * 19 18 17 22 22 C 1.35078 * 119.00826 * 15.53392 * 21 19 18 23 23 O 1.21294 * 120.13420 * 181.62205 * 22 21 19 24 24 C 1.50758 * 119.73275 * 1.64120 * 22 21 19 25 25 O 1.36114 * 120.57576 * 179.86950 * 18 17 16 26 26 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 28 28 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 29 29 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 30 30 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 31 31 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 32 32 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 33 33 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 34 34 H 0.96998 * 120.00823 * 0.02562 * 14 13 2 35 35 H 1.07999 * 119.91420 * 0.02562 * 16 15 14 36 36 H 1.08001 * 120.01330 * 180.24721 * 17 16 15 37 37 H 1.07996 * 120.11967 * 179.97438 * 20 19 18 38 38 H 0.97003 * 120.49440 * 195.53746 * 21 19 18 39 39 H 1.09000 * 109.45067 * 208.61765 * 24 22 21 40 40 H 1.09004 * 109.41871 * 88.69213 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 2.5663 1.5388 5.5860 11 1 0.2303 1.2889 4.9849 12 1 1.3056 -0.3715 6.3874 13 6 2.0400 -0.7214 -1.2492 14 7 1.6525 0.0351 -2.4423 15 6 2.0096 -0.4306 -3.7126 16 6 2.7364 -1.6071 -3.8413 17 6 3.0873 -2.0736 -5.0948 18 6 2.7226 -1.3621 -6.2243 19 6 1.9982 -0.1778 -6.0982 20 6 1.6421 0.2869 -4.8433 21 7 1.6371 0.5312 -7.2527 22 6 1.7117 -0.0871 -8.4513 23 8 1.4325 0.5159 -9.4660 24 6 2.1432 -1.5299 -8.5228 25 8 3.0638 -1.8086 -7.4640 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2953 31 1 2.9286 -2.0221 3.0617 32 1 3.1263 -0.7997 -1.2054 33 1 1.6053 -1.7200 -1.2950 34 1 1.1490 0.8592 -2.3518 35 1 3.0245 -2.1613 -2.9603 36 1 3.6490 -2.9909 -5.1921 37 1 1.0813 1.2045 -4.7443 38 1 1.3381 1.4520 -7.1915 39 1 2.6262 -1.7172 -9.4818 40 1 1.2698 -2.1746 -8.4242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876953335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:22 Heat of formation + Delta-G solvation = -81.209170 kcal Electronic energy + Delta-G solvation = -22045.565008 eV Core-core repulsion = 18630.773121 eV Total energy + Delta-G solvation = -3414.791887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.35852 -40.19281 -39.12585 -37.86375 -36.41852 -35.28185 -33.74199 -31.14351 -30.29913 -28.68051 -28.13399 -27.04222 -25.03269 -24.02672 -23.68093 -21.15048 -20.72617 -19.82411 -19.01314 -18.68751 -18.07798 -17.51061 -16.96647 -16.47494 -16.01595 -15.89699 -15.70569 -15.59076 -15.22325 -14.99368 -14.75360 -14.63608 -14.01420 -13.87748 -13.85359 -13.44645 -13.35276 -12.96675 -12.64434 -12.41906 -12.19393 -12.07540 -11.95863 -11.90400 -11.64780 -11.40543 -11.26436 -10.59808 -10.50773 -10.42863 -9.35908 -8.63022 -8.17066 -6.32739 0.08413 0.44661 1.24683 1.53856 1.62098 1.70104 1.78984 2.29877 2.54043 2.60579 2.79827 3.01003 3.20600 3.70416 3.97757 4.05085 4.10501 4.16031 4.20122 4.26504 4.33492 4.43621 4.67934 4.70006 4.79721 4.81927 4.87441 5.03752 5.11041 5.21132 5.31238 5.32863 5.39788 5.43917 5.56409 5.62175 5.75502 6.04473 6.22362 6.24792 6.40272 6.64692 6.66799 6.82429 7.47429 8.78232 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045485 B = 0.002516 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.444436 B =11127.112228 C =11587.822525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 H 0.062 0.938 4 C 0.017 3.983 5 C -0.604 4.604 6 H 0.053 0.947 7 C -0.042 4.042 8 N -0.943 5.943 9 Si 1.115 2.885 10 H -0.275 1.275 11 H -0.269 1.269 12 H -0.286 1.286 13 C 0.140 3.860 14 N -0.733 5.733 15 C 0.225 3.775 16 C -0.197 4.197 17 C -0.054 4.054 18 C -0.003 4.003 19 C 0.136 3.864 20 C -0.202 4.202 21 N -0.654 5.654 22 C 0.490 3.510 23 O -0.552 6.552 24 C 0.050 3.950 25 O -0.312 6.312 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.067 0.933 29 H -0.011 1.011 30 H -0.008 1.008 31 H 0.257 0.743 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.406 0.594 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.420 0.580 39 H 0.164 0.836 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 0.942 -21.841 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.098 4.098 3 H 0.080 0.920 4 C -0.021 4.021 5 C -0.642 4.642 6 H 0.071 0.929 7 C -0.239 4.239 8 N -0.581 5.581 9 Si 0.937 3.063 10 H -0.201 1.201 11 H -0.194 1.194 12 H -0.212 1.212 13 C 0.016 3.984 14 N -0.362 5.362 15 C 0.119 3.881 16 C -0.221 4.221 17 C -0.073 4.073 18 C -0.050 4.050 19 C 0.040 3.960 20 C -0.227 4.227 21 N -0.300 5.300 22 C 0.279 3.721 23 O -0.430 6.430 24 C -0.027 4.027 25 O -0.227 6.227 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.007 0.993 30 H 0.011 0.989 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.242 0.758 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.165 0.835 38 H 0.260 0.740 39 H 0.181 0.819 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.375 0.897 -20.724 20.879 hybrid contribution -0.401 0.698 -1.311 1.538 sum -2.776 1.595 -22.034 22.266 Atomic orbital electron populations 1.21636 0.94485 1.01072 1.01050 1.21083 0.96662 0.99088 0.92980 0.92002 1.19148 0.94241 0.95035 0.93677 1.22439 1.38023 1.10416 0.93357 0.92886 1.27287 0.94210 0.97274 1.05111 1.70888 1.38199 1.15982 1.33034 0.82948 0.76883 0.74408 0.72045 1.20079 1.19359 1.21210 1.21289 0.98702 0.94980 0.83441 1.44765 1.61535 1.28121 1.01817 1.17700 0.92689 0.92612 0.85091 1.20695 1.05435 0.98070 0.97896 1.20419 0.99015 0.99133 0.88782 1.18445 1.05956 0.94726 0.85864 1.17707 0.99027 0.92585 0.86718 1.20026 1.09827 1.04196 0.88661 1.43739 1.64648 1.16622 1.05015 1.22087 0.75984 0.91690 0.82360 1.90791 1.49809 1.67859 1.34534 1.23355 0.96721 0.89763 0.92905 1.86270 1.45139 1.76982 1.14273 0.93920 0.93744 0.91410 0.99285 0.98948 0.93391 0.92894 0.92342 0.75798 0.84891 0.82902 0.83490 0.73971 0.81898 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 8.88 71.98 0.64 -3.43 16 2 C -0.08 -2.82 2.37 -10.79 -0.03 -2.84 16 3 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.02 0.79 3.76 29.85 0.11 0.91 16 5 C -0.60 -32.59 8.41 25.60 0.22 -32.38 16 6 H 0.05 2.78 7.06 -2.91 -0.02 2.75 16 7 C -0.04 -2.34 5.46 84.65 0.46 -1.88 16 8 N -0.94 -57.22 13.65 21.45 0.29 -56.93 16 9 Si 1.11 49.13 29.90 68.60 2.05 51.18 16 10 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 12 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.14 4.03 4.30 86.38 0.37 4.40 16 14 N -0.73 -16.89 5.47 -339.26 -1.86 -18.75 16 15 C 0.22 4.91 6.66 38.15 0.25 5.16 16 16 C -0.20 -4.27 9.31 22.43 0.21 -4.06 16 17 C -0.05 -1.06 9.99 22.31 0.22 -0.83 16 18 C 0.00 -0.05 6.44 22.58 0.15 0.09 16 19 C 0.14 2.65 6.54 38.13 0.25 2.90 16 20 C -0.20 -3.81 9.80 22.48 0.22 -3.59 16 21 N -0.65 -11.70 5.47 -302.73 -1.66 -13.36 16 22 C 0.49 9.60 7.94 87.63 0.70 10.30 16 23 O -0.55 -14.19 17.95 -3.07 -0.06 -14.25 16 24 C 0.05 0.71 7.17 71.25 0.51 1.22 16 25 O -0.31 -5.88 10.46 -94.84 -0.99 -6.87 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.62 6.95 -2.39 -0.02 1.61 16 28 H 0.07 1.72 7.18 -2.39 -0.02 1.70 16 29 H -0.01 -0.57 8.01 -2.39 -0.02 -0.59 16 30 H -0.01 -0.40 8.00 -2.39 -0.02 -0.42 16 31 H 0.26 15.65 7.22 -92.71 -0.67 14.98 16 32 H 0.05 1.58 7.93 -2.39 -0.02 1.56 16 33 H 0.06 1.68 7.96 -2.39 -0.02 1.66 16 34 H 0.41 8.27 7.67 -92.71 -0.71 7.56 16 35 H 0.13 2.87 6.71 -2.91 -0.02 2.85 16 36 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.42 6.20 8.89 -92.71 -0.82 5.38 16 39 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.12 1.17 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -67.71 333.51 1.71 -66.00 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.36 Total: 17.00 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 4.28 Total: -24.04 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -3.22 Total: -89.03 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.05 Total: -21.11 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.05 Total: 51.18 kcal Total: -67.71 1.71 -66.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876953335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.207 kcal (2) G-P(sol) polarization free energy of solvation -67.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds