Wall clock time and date at job start Tue Mar 31 2020 06:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00295 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99793 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47195 * 90.00459 * 9 7 5 11 11 H 1.48503 * 109.47190 * 210.00292 * 9 7 5 12 12 H 1.48498 * 109.47389 * 330.00392 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46499 * 109.46679 * 294.99474 * 13 2 1 15 15 C 1.39935 * 119.99531 * 179.97438 * 14 13 2 16 16 C 1.38878 * 119.98120 * 359.72775 * 15 14 13 17 17 C 1.38265 * 120.17706 * 179.74955 * 16 15 14 18 18 C 1.38379 * 119.97276 * 0.52773 * 17 16 15 19 19 C 1.39402 * 119.99367 * 359.73571 * 18 17 16 20 20 C 1.38469 * 120.04463 * 359.97438 * 19 18 17 21 21 N 1.40208 * 119.27581 * 179.97438 * 19 18 17 22 22 C 1.35082 * 119.01410 * 15.45943 * 21 19 18 23 23 O 1.21291 * 120.13100 * 181.68345 * 22 21 19 24 24 C 1.50752 * 119.73718 * 1.66553 * 22 21 19 25 25 O 1.36117 * 120.57670 * 179.77667 * 18 17 16 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 0.97000 * 120.00616 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 34 34 H 0.96996 * 120.00184 * 0.02562 * 14 13 2 35 35 H 1.07999 * 119.91144 * 359.97438 * 16 15 14 36 36 H 1.08003 * 120.01894 * 180.25529 * 17 16 15 37 37 H 1.07999 * 120.11503 * 179.97438 * 20 19 18 38 38 H 0.97000 * 120.49179 * 195.48801 * 21 19 18 39 39 H 1.09000 * 109.44172 * 88.73177 * 24 22 21 40 40 H 1.08999 * 109.44208 * 208.66927 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 1.6449 0.2772 -4.7994 9 14 2.9627 -1.9889 -3.9028 10 1 2.0236 -3.1333 -4.0190 11 1 3.8109 -1.9192 -5.1198 12 1 3.8252 -2.1757 -2.7084 13 6 2.0400 -0.7213 1.2493 14 7 1.6525 0.0354 2.4423 15 6 2.0088 -0.4308 3.7127 16 6 2.7248 -1.6137 3.8423 17 6 3.0834 -2.0754 5.0953 18 6 2.7191 -1.3635 6.2247 19 6 1.9957 -0.1786 6.0984 20 6 1.6416 0.2871 4.8434 21 7 1.6341 0.5302 7.2528 22 6 2.2470 0.2374 8.4204 23 8 1.9284 0.8167 9.4373 24 6 3.3282 -0.8125 8.4546 25 8 3.0618 -1.8091 7.4644 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6054 -1.7198 -1.2952 31 1 1.8922 -0.0457 -5.6800 32 1 1.6054 -1.7199 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 1.1484 0.8591 2.3517 35 1 3.0053 -2.1726 2.9618 36 1 3.6437 -2.9935 5.1929 37 1 1.0808 1.2047 4.7443 38 1 0.9536 1.2204 7.2136 39 1 4.2925 -0.3471 8.2505 40 1 3.3511 -1.2778 9.4400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876953336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:25 Heat of formation + Delta-G solvation = -52.906654 kcal Electronic energy + Delta-G solvation = -22063.297695 eV Core-core repulsion = 18649.733097 eV Total energy + Delta-G solvation = -3413.564598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55804 -39.29753 -38.19775 -36.66746 -35.37743 -33.69597 -32.12202 -30.28918 -29.51731 -27.91041 -27.15649 -25.88282 -23.45918 -23.19780 -22.11897 -19.92496 -19.45074 -18.96769 -18.00871 -17.26763 -17.02200 -16.46181 -16.07222 -15.42288 -15.15942 -14.80904 -14.73208 -14.33838 -14.09535 -13.78517 -13.49798 -13.41139 -13.01513 -12.82590 -12.58399 -12.35525 -11.89139 -11.61292 -11.36586 -11.24286 -11.15932 -10.84283 -10.62984 -10.42920 -10.04376 -9.84513 -9.72151 -9.52387 -9.20223 -8.60711 -8.52080 -7.26473 -6.10738 -4.09242 0.92060 1.28292 2.05817 2.46642 3.10068 3.25551 3.33906 3.35530 3.48185 3.63627 3.77795 4.38818 4.49036 4.62345 4.79233 5.03111 5.08667 5.19022 5.22090 5.30194 5.46771 5.54356 5.64161 5.71105 5.88033 6.00829 6.14382 6.15399 6.21544 6.24376 6.39351 6.54401 6.60082 6.73900 6.92038 7.09163 7.12323 7.27609 7.32791 7.44999 7.70347 7.74084 8.45703 8.93244 9.51214 11.02407 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038729 B = 0.002681 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.807733 B =10441.744166 C =10997.703597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.006 4.006 5 C -0.518 4.518 6 H 0.073 0.927 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.122 3.878 14 N -0.735 5.735 15 C 0.239 3.761 16 C -0.190 4.190 17 C -0.052 4.052 18 C 0.002 3.998 19 C 0.141 3.859 20 C -0.209 4.209 21 N -0.658 5.658 22 C 0.492 3.508 23 O -0.520 6.520 24 C 0.051 3.949 25 O -0.304 6.304 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.018 0.982 30 H 0.014 0.986 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.401 0.599 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.414 0.586 39 H 0.096 0.904 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 -2.997 22.621 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.087 0.913 4 C -0.044 4.044 5 C -0.556 4.556 6 H 0.091 0.909 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C -0.002 4.002 14 N -0.362 5.362 15 C 0.132 3.868 16 C -0.214 4.214 17 C -0.072 4.072 18 C -0.045 4.045 19 C 0.045 3.955 20 C -0.234 4.234 21 N -0.305 5.305 22 C 0.280 3.720 23 O -0.395 6.395 24 C -0.028 4.028 25 O -0.219 6.219 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.236 0.764 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.253 0.747 39 H 0.114 0.886 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.725 -3.107 22.934 23.303 hybrid contribution -0.085 0.134 -0.417 0.446 sum 2.640 -2.973 22.517 22.865 Atomic orbital electron populations 1.21741 0.95429 1.01242 1.00758 1.21248 0.96016 0.99944 0.93414 0.91304 1.19567 0.96098 0.95887 0.92854 1.21069 1.35774 1.09688 0.89038 0.90852 1.25026 0.95561 0.97000 0.95921 1.69902 1.46889 1.39269 0.98089 0.86801 0.80634 0.84187 0.77778 1.20309 1.21425 1.18985 1.21715 0.99238 0.95305 0.83939 1.45042 1.60780 1.28056 1.02333 1.17598 0.91953 0.92041 0.85219 1.20568 1.05718 0.97667 0.97429 1.20245 0.98199 0.99791 0.88982 1.18254 1.04951 0.95961 0.85333 1.17656 0.98880 0.92497 0.86445 1.19904 1.11012 1.03392 0.89133 1.43752 1.40581 1.38913 1.07245 1.21650 0.83701 0.83975 0.82720 1.90803 1.63837 1.52478 1.32364 1.23085 0.96414 0.88809 0.94444 1.86265 1.86215 1.31960 1.17447 0.91200 0.94871 0.93448 0.96418 0.96750 0.92695 0.92279 0.92259 0.76422 0.84749 0.84546 0.85284 0.74681 0.88650 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.88 37.16 0.33 -1.86 16 2 C -0.09 -1.49 2.37 -90.62 -0.22 -1.70 16 3 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.01 -0.13 3.52 -27.88 -0.10 -0.23 16 5 C -0.52 -13.77 8.96 -34.44 -0.31 -14.08 16 6 H 0.07 2.10 7.30 -52.49 -0.38 1.72 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 9 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 13 C 0.12 1.67 4.30 -4.04 -0.02 1.65 16 14 N -0.73 -8.63 5.47 -58.58 -0.32 -8.95 16 15 C 0.24 2.69 6.66 -83.69 -0.56 2.13 16 16 C -0.19 -2.06 9.31 -39.33 -0.37 -2.43 16 17 C -0.05 -0.53 9.99 -39.52 -0.39 -0.93 16 18 C 0.00 0.03 6.44 -39.10 -0.25 -0.23 16 19 C 0.14 1.47 6.54 -83.51 -0.55 0.93 16 20 C -0.21 -2.12 9.80 -39.26 -0.38 -2.51 16 21 N -0.66 -6.33 5.47 -9.68 -0.05 -6.38 16 22 C 0.49 5.14 7.94 -10.82 -0.09 5.05 16 23 O -0.52 -6.89 17.95 5.55 0.10 -6.79 16 24 C 0.05 0.41 7.17 36.03 0.26 0.67 16 25 O -0.30 -3.11 10.45 -20.11 -0.21 -3.32 16 26 H 0.07 1.31 6.95 -51.93 -0.36 0.95 16 27 H 0.03 0.44 7.18 -51.93 -0.37 0.07 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 30 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.06 0.80 7.93 -51.93 -0.41 0.38 16 33 H 0.06 0.81 7.96 -51.93 -0.41 0.40 16 34 H 0.40 4.34 7.67 -40.82 -0.31 4.03 16 35 H 0.13 1.39 6.72 -52.49 -0.35 1.03 16 36 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.41 3.31 8.89 -40.82 -0.36 2.95 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 331.22 15.07 4.99 4.99 Total: -1.00 -31.23 331.22 -7.56 -38.80 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.44 Total: 3.47 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.74 Total: -11.79 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.40 Total: -41.50 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.11 Total: -10.10 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.23 -7.56 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876953336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.109 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds