Wall clock time and date at job start Tue Mar 31 2020 06:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00295 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99793 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47195 * 90.00459 * 9 7 5 11 11 H 1.48503 * 109.47190 * 210.00292 * 9 7 5 12 12 H 1.48498 * 109.47389 * 330.00392 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46499 * 109.46679 * 294.99474 * 13 2 1 15 15 C 1.39935 * 119.99531 * 179.97438 * 14 13 2 16 16 C 1.38878 * 119.98120 * 359.72775 * 15 14 13 17 17 C 1.38265 * 120.17706 * 179.74955 * 16 15 14 18 18 C 1.38379 * 119.97276 * 0.52773 * 17 16 15 19 19 C 1.39402 * 119.99367 * 359.73571 * 18 17 16 20 20 C 1.38469 * 120.04463 * 359.97438 * 19 18 17 21 21 N 1.40208 * 119.27581 * 179.97438 * 19 18 17 22 22 C 1.35082 * 119.01410 * 15.45943 * 21 19 18 23 23 O 1.21291 * 120.13100 * 181.68345 * 22 21 19 24 24 C 1.50752 * 119.73718 * 1.66553 * 22 21 19 25 25 O 1.36117 * 120.57670 * 179.77667 * 18 17 16 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 0.97000 * 120.00616 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 34 34 H 0.96996 * 120.00184 * 0.02562 * 14 13 2 35 35 H 1.07999 * 119.91144 * 359.97438 * 16 15 14 36 36 H 1.08003 * 120.01894 * 180.25529 * 17 16 15 37 37 H 1.07999 * 120.11503 * 179.97438 * 20 19 18 38 38 H 0.97000 * 120.49179 * 195.48801 * 21 19 18 39 39 H 1.09000 * 109.44172 * 88.73177 * 24 22 21 40 40 H 1.08999 * 109.44208 * 208.66927 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 1.6449 0.2772 -4.7994 9 14 2.9627 -1.9889 -3.9028 10 1 2.0236 -3.1333 -4.0190 11 1 3.8109 -1.9192 -5.1198 12 1 3.8252 -2.1757 -2.7084 13 6 2.0400 -0.7213 1.2493 14 7 1.6525 0.0354 2.4423 15 6 2.0088 -0.4308 3.7127 16 6 2.7248 -1.6137 3.8423 17 6 3.0834 -2.0754 5.0953 18 6 2.7191 -1.3635 6.2247 19 6 1.9957 -0.1786 6.0984 20 6 1.6416 0.2871 4.8434 21 7 1.6341 0.5302 7.2528 22 6 2.2470 0.2374 8.4204 23 8 1.9284 0.8167 9.4373 24 6 3.3282 -0.8125 8.4546 25 8 3.0618 -1.8091 7.4644 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6054 -1.7198 -1.2952 31 1 1.8922 -0.0457 -5.6800 32 1 1.6054 -1.7199 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 1.1484 0.8591 2.3517 35 1 3.0053 -2.1726 2.9618 36 1 3.6437 -2.9935 5.1929 37 1 1.0808 1.2047 4.7443 38 1 0.9536 1.2204 7.2136 39 1 4.2925 -0.3471 8.2505 40 1 3.3511 -1.2778 9.4400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876953336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:24 Heat of formation + Delta-G solvation = -74.434707 kcal Electronic energy + Delta-G solvation = -22064.231221 eV Core-core repulsion = 18649.733097 eV Total energy + Delta-G solvation = -3414.498124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.32537 -40.14859 -39.07561 -37.76740 -36.33132 -35.03733 -33.82562 -31.15688 -30.39385 -29.34743 -28.17708 -27.00209 -24.73301 -23.97607 -23.42810 -20.89408 -20.63650 -19.78284 -19.03706 -18.71943 -18.03547 -17.40237 -16.92592 -16.54846 -16.12912 -15.94497 -15.79014 -15.57710 -15.02521 -14.87351 -14.64596 -14.52462 -14.16747 -13.88099 -13.86008 -13.56203 -13.30989 -12.82259 -12.74042 -12.34203 -12.28685 -12.08495 -11.93805 -11.70497 -11.53447 -11.31788 -11.23272 -11.07347 -10.71794 -10.36544 -9.31443 -8.24044 -8.10751 -6.26795 0.12836 0.49742 1.27675 1.39939 1.41666 1.52617 1.73181 2.34979 2.40213 2.61936 2.85079 3.04084 3.12069 3.74795 4.04627 4.07269 4.19371 4.21009 4.25697 4.32150 4.38894 4.49041 4.76305 4.77554 4.86327 4.89233 4.96482 5.07394 5.16161 5.27264 5.37244 5.39963 5.44415 5.52769 5.61155 5.69287 5.73147 5.78924 6.27041 6.35038 6.46715 6.69014 6.81573 6.87281 7.37187 8.92504 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038729 B = 0.002681 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.807733 B =10441.744166 C =10997.703597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 H 0.059 0.941 4 C -0.006 4.006 5 C -0.518 4.518 6 H 0.035 0.965 7 C -0.001 4.001 8 N -0.956 5.956 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.240 1.240 13 C 0.137 3.863 14 N -0.735 5.735 15 C 0.227 3.773 16 C -0.195 4.195 17 C -0.054 4.054 18 C -0.005 4.005 19 C 0.134 3.866 20 C -0.205 4.205 21 N -0.655 5.655 22 C 0.489 3.511 23 O -0.554 6.554 24 C 0.051 3.949 25 O -0.312 6.312 26 H 0.034 0.966 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.022 0.978 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.404 0.596 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.420 0.580 39 H 0.117 0.883 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 -4.696 24.574 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.100 4.100 3 H 0.077 0.923 4 C -0.044 4.044 5 C -0.556 4.556 6 H 0.053 0.947 7 C -0.197 4.197 8 N -0.597 5.597 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.217 1.217 12 H -0.163 1.163 13 C 0.012 3.988 14 N -0.364 5.364 15 C 0.121 3.879 16 C -0.218 4.218 17 C -0.073 4.073 18 C -0.053 4.053 19 C 0.038 3.962 20 C -0.230 4.230 21 N -0.301 5.301 22 C 0.278 3.722 23 O -0.431 6.431 24 C -0.027 4.027 25 O -0.227 6.227 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.162 0.838 38 H 0.259 0.741 39 H 0.135 0.865 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.808 -4.806 24.915 25.658 hybrid contribution -0.474 0.746 -0.971 1.313 sum 3.334 -4.060 23.944 24.514 Atomic orbital electron populations 1.21662 0.95053 1.01376 1.00524 1.21067 0.96280 0.99284 0.93355 0.92298 1.19534 0.96421 0.95845 0.92633 1.21451 1.34268 1.08694 0.91226 0.94681 1.26015 0.97068 1.00991 0.95597 1.70072 1.49171 1.41705 0.98751 0.85707 0.79368 0.79454 0.78416 1.19433 1.21724 1.16322 1.21389 0.99301 0.95121 0.82950 1.44825 1.61399 1.28207 1.01971 1.17692 0.92662 0.92559 0.85025 1.20721 1.05528 0.97601 0.97964 1.20440 0.98045 1.00299 0.88534 1.18483 1.04883 0.96036 0.85851 1.17732 0.99170 0.92679 0.86638 1.20035 1.10550 1.03713 0.88727 1.43753 1.40515 1.38821 1.07010 1.22103 0.83841 0.83972 0.82269 1.90789 1.65028 1.53925 1.33402 1.23326 0.96252 0.88174 0.94943 1.86252 1.86221 1.32745 1.17456 0.94713 0.91821 0.93064 0.95896 0.95959 0.92779 0.91521 0.91897 0.75975 0.84205 0.82816 0.83822 0.74055 0.86530 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 8.88 71.98 0.64 -3.45 16 2 C -0.08 -2.65 2.37 -10.79 -0.03 -2.68 16 3 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.01 -0.27 3.52 29.85 0.10 -0.17 16 5 C -0.52 -28.08 8.96 25.60 0.23 -27.85 16 6 H 0.03 2.10 7.30 -2.91 -0.02 2.08 16 7 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 8 N -0.96 -58.84 13.96 21.44 0.30 -58.54 16 9 Si 0.95 42.43 27.47 68.60 1.88 44.32 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 13 C 0.14 3.38 4.30 86.38 0.37 3.76 16 14 N -0.74 -15.43 5.47 -339.24 -1.86 -17.29 16 15 C 0.23 4.53 6.66 38.15 0.25 4.78 16 16 C -0.19 -3.70 9.31 22.43 0.21 -3.49 16 17 C -0.05 -0.95 9.99 22.31 0.22 -0.72 16 18 C -0.01 -0.10 6.44 22.58 0.15 0.04 16 19 C 0.13 2.51 6.54 38.14 0.25 2.76 16 20 C -0.20 -3.70 9.80 22.48 0.22 -3.48 16 21 N -0.65 -11.54 5.47 -302.74 -1.66 -13.20 16 22 C 0.49 9.48 7.94 87.63 0.70 10.18 16 23 O -0.55 -14.19 17.95 -3.06 -0.06 -14.24 16 24 C 0.05 0.69 7.17 71.25 0.51 1.21 16 25 O -0.31 -5.62 10.45 -94.88 -0.99 -6.61 16 26 H 0.03 1.33 6.95 -2.39 -0.02 1.31 16 27 H 0.06 1.61 7.18 -2.39 -0.02 1.59 16 28 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 30 H 0.02 0.90 7.57 -2.39 -0.02 0.89 16 31 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.07 1.58 7.93 -2.39 -0.02 1.56 16 33 H 0.06 1.53 7.96 -2.39 -0.02 1.51 16 34 H 0.40 7.82 7.67 -92.71 -0.71 7.11 16 35 H 0.14 2.46 6.72 -2.91 -0.02 2.44 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 38 H 0.42 6.17 8.89 -92.71 -0.82 5.34 16 39 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -68.51 331.22 1.40 -67.11 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -0.51 Total: 17.13 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 4.29 Total: -18.69 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -3.21 Total: -89.02 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -1.05 Total: -20.85 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 1.88 Total: 44.32 kcal Total: -68.51 1.40 -67.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876953336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.325 kcal (2) G-P(sol) polarization free energy of solvation -68.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds