Wall clock time and date at job start Tue Mar 31 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47346 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46854 * 120.00026 * 8 6 4 11 11 H 1.48502 * 109.46870 * 239.99430 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 H 1.09001 * 110.46503 * 305.70236 * 14 13 12 16 16 C 1.54091 * 110.52523 * 183.06860 * 14 13 12 17 17 N 1.47092 * 103.77819 * 241.36832 * 16 14 13 18 18 C 1.39946 * 125.55377 * 179.97438 * 17 16 14 19 19 C 1.38862 * 120.07435 * 359.72666 * 18 17 16 20 20 C 1.38116 * 119.92891 * 179.69777 * 19 18 17 21 21 C 1.38274 * 120.07247 * 0.59766 * 20 19 18 22 22 C 1.38277 * 120.13941 * 359.68044 * 21 20 19 23 23 C 1.38115 * 120.07125 * 0.02562 * 22 21 20 24 24 C 1.33999 * 108.88335 * 359.97438 * 17 16 14 25 25 O 1.21512 * 123.06986 * 179.97438 * 24 17 16 26 26 O 1.34080 * 113.90120 * 359.91759 * 24 17 16 27 27 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 29 29 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 30 30 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 31 31 H 1.00908 * 110.99583 * 38.95067 * 12 2 1 32 32 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 33 33 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 34 34 H 1.08998 * 110.55915 * 359.94088 * 16 14 13 35 35 H 1.08997 * 110.56563 * 122.79279 * 16 14 13 36 36 H 1.08002 * 120.03345 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.96504 * 180.27716 * 20 19 18 38 38 H 1.08006 * 119.93082 * 179.69924 * 21 20 19 39 39 H 1.08010 * 119.96820 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.03877 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1659 -1.5867 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 1 1.9873 -1.4192 3.7577 16 6 2.5981 0.3852 4.8119 17 7 4.0144 0.4383 5.2052 18 6 4.5315 1.1566 6.2893 19 6 3.6846 1.9059 7.0952 20 6 4.1972 2.6086 8.1680 21 6 5.5540 2.5767 8.4326 22 6 6.4009 1.8362 7.6285 23 6 5.8937 1.1263 6.5578 24 6 4.7287 -0.3132 4.3564 25 8 5.9329 -0.4506 4.4445 26 8 3.9941 -0.9013 3.4012 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7081 1.1608 -3.4844 31 1 1.4494 -1.4979 1.4101 32 1 2.7588 1.0462 2.1182 33 1 1.0870 0.6163 2.5526 34 1 2.2355 1.3796 4.5515 35 1 1.9948 -0.0464 5.6105 36 1 2.6253 1.9348 6.8864 37 1 3.5384 3.1880 8.7978 38 1 5.9531 3.1310 9.2692 39 1 7.4604 1.8135 7.8375 40 1 6.5557 0.5485 5.9299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878817283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:58 Heat of formation + Delta-G solvation = -31.187567 kcal Electronic energy + Delta-G solvation = -22555.119001 eV Core-core repulsion = 19142.496214 eV Total energy + Delta-G solvation = -3412.622787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.96415 -39.25621 -37.57124 -36.01637 -35.57368 -32.88832 -31.23182 -31.03462 -29.89791 -27.87756 -25.27946 -24.81801 -23.83037 -22.80963 -21.83507 -20.80370 -20.31862 -18.27952 -17.26565 -17.00006 -16.56538 -16.19160 -15.51789 -15.17123 -14.76514 -14.52851 -14.27168 -14.13101 -14.03191 -13.64872 -13.61634 -13.08003 -12.93089 -12.54841 -12.27669 -11.99835 -11.70141 -11.63976 -11.44603 -10.97776 -10.84200 -10.69988 -10.62685 -10.38905 -10.24109 -10.21347 -9.89056 -9.16861 -9.06453 -8.39949 -8.20038 -7.38422 -6.02292 -4.05173 1.08214 1.19077 2.17826 2.66722 3.31338 3.32763 3.39319 3.45679 3.64605 3.87281 4.28772 4.42299 4.48838 4.71527 4.81713 4.89920 4.99325 5.14842 5.18955 5.24028 5.30003 5.32159 5.35883 5.54724 5.76914 5.86488 6.02628 6.15299 6.25808 6.30373 6.37294 6.56771 6.72512 6.85254 6.96743 7.20132 7.27495 7.64881 7.82889 7.87297 8.18011 8.39915 8.51481 9.02630 9.60554 11.04969 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.003060 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.011719 B = 9148.437548 C = 9548.054389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.495 4.495 5 H 0.065 0.935 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.677 5.677 13 C 0.052 3.948 14 C 0.076 3.924 15 H 0.118 0.882 16 C 0.065 3.935 17 N -0.573 5.573 18 C 0.188 3.812 19 C -0.159 4.159 20 C -0.092 4.092 21 C -0.149 4.149 22 C -0.090 4.090 23 C -0.156 4.156 24 C 0.642 3.358 25 O -0.508 6.508 26 O -0.289 6.289 27 H 0.029 0.971 28 H 0.004 0.996 29 H 0.091 0.909 30 H 0.259 0.741 31 H 0.327 0.673 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 3.051 22.112 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.307 5.307 13 C -0.079 4.079 14 C 0.019 3.981 15 H 0.135 0.865 16 C -0.058 4.058 17 N -0.309 5.309 18 C 0.095 3.905 19 C -0.180 4.180 20 C -0.111 4.111 21 C -0.168 4.168 22 C -0.108 4.108 23 C -0.176 4.176 24 C 0.398 3.602 25 O -0.393 6.393 26 O -0.198 6.198 27 H 0.048 0.952 28 H 0.023 0.977 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.144 0.856 32 H 0.096 0.904 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.676 2.950 21.537 21.902 hybrid contribution -0.993 -0.156 -0.642 1.192 sum 1.683 2.795 20.895 21.148 Atomic orbital electron populations 1.22452 1.00527 0.99350 1.00591 1.19202 0.89614 0.94461 0.86286 0.94796 1.21188 1.30149 1.12543 0.89450 0.91711 1.24951 0.95289 0.95205 0.99128 1.69883 1.37394 1.23266 1.23331 0.86431 0.78506 0.79738 0.82698 1.19633 1.21199 1.21111 1.60791 1.58438 1.08612 1.02851 1.22267 0.99201 0.96240 0.90160 1.24084 0.80421 0.98689 0.94883 0.86467 1.23072 0.82200 1.02910 0.97633 1.45484 1.08845 1.48017 1.28556 1.17476 0.93015 0.93326 0.86713 1.20730 0.99338 1.00701 0.97197 1.20906 0.95490 0.98261 0.96416 1.21134 0.93704 1.01216 1.00788 1.21072 0.99959 0.95706 0.94085 1.21687 0.93888 1.02274 0.99781 1.18749 0.85952 0.77311 0.78201 1.90900 1.09833 1.64903 1.73617 1.87634 1.20322 1.64913 1.46955 0.95154 0.97680 0.89071 0.93091 0.85580 0.90418 0.93484 0.87974 0.88210 0.85640 0.85595 0.86003 0.85534 0.82510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 8.94 37.15 0.33 -3.50 16 2 C 0.21 5.10 2.57 -68.87 -0.18 4.93 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.50 16 4 C -0.49 -13.57 8.84 -34.44 -0.30 -13.87 16 5 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 N -0.68 -13.46 6.23 -107.96 -0.67 -14.13 16 13 C 0.05 0.79 5.03 -3.83 -0.02 0.77 16 14 C 0.08 0.93 4.03 -26.16 -0.11 0.83 16 15 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 16 C 0.07 0.61 6.13 -3.15 -0.02 0.60 16 17 N -0.57 -7.35 3.16 -118.19 -0.37 -7.72 16 18 C 0.19 2.29 6.63 -83.69 -0.56 1.74 16 19 C -0.16 -1.51 9.49 -39.40 -0.37 -1.89 16 20 C -0.09 -0.77 10.04 -39.61 -0.40 -1.17 16 21 C -0.15 -1.28 10.04 -39.55 -0.40 -1.68 16 22 C -0.09 -0.90 10.04 -39.61 -0.40 -1.30 16 23 C -0.16 -1.98 9.31 -39.39 -0.37 -2.35 16 24 C 0.64 10.55 8.78 53.71 0.47 11.03 16 25 O -0.51 -9.65 14.74 -19.10 -0.28 -9.94 16 26 O -0.29 -4.86 10.82 -38.62 -0.42 -5.28 16 27 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 29 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.33 5.95 8.47 -39.29 -0.33 5.62 16 32 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 33 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 34 H 0.10 0.83 7.73 -51.93 -0.40 0.43 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.13 0.92 7.31 -52.49 -0.38 0.54 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.16 2.31 5.24 -52.49 -0.28 2.04 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -32.24 332.59 -8.92 -41.16 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.39 Total: 3.56 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.41 Total: -4.45 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.42 Total: -46.61 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.70 Total: -15.21 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.24 -8.92 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.975 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds