Wall clock time and date at job start Tue Mar 31 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 5 5 H 1.08002 * 120.00262 * 240.00202 * 4 2 1 6 6 C 1.37881 * 119.99815 * 60.00346 * 4 2 1 7 7 N 1.31517 * 119.99938 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47346 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46854 * 120.00026 * 8 6 4 11 11 H 1.48502 * 109.46870 * 239.99430 * 8 6 4 12 12 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 13 13 C 1.46899 * 111.00029 * 275.00154 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 H 1.09001 * 110.46503 * 305.70236 * 14 13 12 16 16 C 1.54091 * 110.52523 * 183.06860 * 14 13 12 17 17 N 1.47092 * 103.77819 * 241.36832 * 16 14 13 18 18 C 1.39946 * 125.55377 * 179.97438 * 17 16 14 19 19 C 1.38862 * 120.07435 * 359.72666 * 18 17 16 20 20 C 1.38116 * 119.92891 * 179.69777 * 19 18 17 21 21 C 1.38274 * 120.07247 * 0.59766 * 20 19 18 22 22 C 1.38277 * 120.13941 * 359.68044 * 21 20 19 23 23 C 1.38115 * 120.07125 * 0.02562 * 22 21 20 24 24 C 1.33999 * 108.88335 * 359.97438 * 17 16 14 25 25 O 1.21512 * 123.06986 * 179.97438 * 24 17 16 26 26 O 1.34080 * 113.90120 * 359.91759 * 24 17 16 27 27 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 29 29 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 30 30 H 0.97001 * 120.00067 * 180.02562 * 7 6 4 31 31 H 1.00908 * 110.99583 * 38.95067 * 12 2 1 32 32 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 33 33 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 34 34 H 1.08998 * 110.55915 * 359.94088 * 16 14 13 35 35 H 1.08997 * 110.56563 * 122.79279 * 16 14 13 36 36 H 1.08002 * 120.03345 * 0.02562 * 19 18 17 37 37 H 1.08002 * 119.96504 * 180.27716 * 20 19 18 38 38 H 1.08006 * 119.93082 * 179.69924 * 21 20 19 39 39 H 1.08010 * 119.96820 * 179.97438 * 22 21 20 40 40 H 1.07999 * 120.03877 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1659 -1.5867 -4.8160 11 1 3.1466 -0.1875 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2226 2.3469 14 6 2.5950 -0.5331 3.5745 15 1 1.9873 -1.4192 3.7577 16 6 2.5981 0.3852 4.8119 17 7 4.0144 0.4383 5.2052 18 6 4.5315 1.1566 6.2893 19 6 3.6846 1.9059 7.0952 20 6 4.1972 2.6086 8.1680 21 6 5.5540 2.5767 8.4326 22 6 6.4009 1.8362 7.6285 23 6 5.8937 1.1263 6.5578 24 6 4.7287 -0.3132 4.3564 25 8 5.9329 -0.4506 4.4445 26 8 3.9941 -0.9013 3.4012 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7081 1.1608 -3.4844 31 1 1.4494 -1.4979 1.4101 32 1 2.7588 1.0462 2.1182 33 1 1.0870 0.6163 2.5526 34 1 2.2355 1.3796 4.5515 35 1 1.9948 -0.0464 5.6105 36 1 2.6253 1.9348 6.8864 37 1 3.5384 3.1880 8.7978 38 1 5.9531 3.1310 9.2692 39 1 7.4604 1.8135 7.8375 40 1 6.5557 0.5485 5.9299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878817283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:57 Heat of formation + Delta-G solvation = -52.750781 kcal Electronic energy + Delta-G solvation = -22556.054052 eV Core-core repulsion = 19142.496214 eV Total energy + Delta-G solvation = -3413.557839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.02342 -40.08278 -38.81784 -37.65797 -36.53035 -34.71437 -32.45339 -31.86197 -30.97357 -29.25577 -27.23611 -26.03418 -24.75911 -23.88253 -22.70349 -22.17194 -21.77307 -19.24302 -18.57879 -18.23329 -17.77132 -17.42524 -16.79653 -16.55250 -16.12019 -15.85205 -15.31846 -15.07267 -14.99729 -14.91797 -14.54271 -14.41281 -14.27222 -13.69739 -13.54474 -13.29432 -13.15943 -12.87606 -12.81653 -12.65267 -12.33783 -12.17179 -12.15130 -11.98635 -11.74096 -11.33151 -11.30780 -10.99885 -10.49563 -9.90676 -9.03759 -8.96432 -8.11638 -6.21621 0.27576 0.44438 1.21166 1.39598 1.42463 1.54223 1.54653 2.33006 2.42776 2.88880 2.94286 3.17132 3.36243 3.58620 3.88566 4.01557 4.05080 4.23621 4.29895 4.33966 4.38380 4.53276 4.54041 4.59661 4.73135 4.77844 4.85086 4.92658 5.08524 5.14364 5.38850 5.39778 5.44996 5.54503 5.63387 5.70634 5.82830 6.06074 6.22406 6.28034 6.61461 6.73680 6.83395 6.94441 7.48453 8.93614 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030197 B = 0.003060 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.011719 B = 9148.437548 C = 9548.054389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.517 4.517 5 H 0.049 0.951 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.284 1.284 12 N -0.693 5.693 13 C 0.054 3.946 14 C 0.076 3.924 15 H 0.148 0.852 16 C 0.070 3.930 17 N -0.565 5.565 18 C 0.159 3.841 19 C -0.152 4.152 20 C -0.089 4.089 21 C -0.144 4.144 22 C -0.098 4.098 23 C -0.187 4.187 24 C 0.633 3.367 25 O -0.552 6.552 26 O -0.322 6.322 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.261 0.739 31 H 0.339 0.661 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.138 0.862 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 3.809 24.591 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.109 3.891 3 H 0.019 0.981 4 C -0.555 4.555 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.782 3.218 9 H -0.197 1.197 10 H -0.202 1.202 11 H -0.210 1.210 12 N -0.323 5.323 13 C -0.076 4.076 14 C 0.021 3.979 15 H 0.165 0.835 16 C -0.051 4.051 17 N -0.302 5.302 18 C 0.067 3.933 19 C -0.172 4.172 20 C -0.107 4.107 21 C -0.163 4.163 22 C -0.117 4.117 23 C -0.207 4.207 24 C 0.389 3.611 25 O -0.440 6.440 26 O -0.232 6.232 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.179 0.821 38 H 0.169 0.831 39 H 0.156 0.844 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.732 3.720 24.049 24.346 hybrid contribution -0.384 -0.323 -1.318 1.411 sum 0.348 3.397 22.730 22.986 Atomic orbital electron populations 1.22225 0.99095 0.99630 1.00594 1.18912 0.90552 0.92465 0.87182 0.98132 1.21513 1.30225 1.12413 0.91392 0.93239 1.25651 0.95525 0.95908 1.01708 1.69992 1.38023 1.24137 1.23907 0.85541 0.78148 0.78582 0.79547 1.19749 1.20185 1.20969 1.60542 1.58721 1.09691 1.03394 1.22291 1.00343 0.95190 0.89762 1.24296 0.78658 1.00310 0.94685 0.83497 1.23359 0.80789 1.03646 0.97334 1.45497 1.09777 1.46964 1.27916 1.17768 0.93304 0.94817 0.87451 1.21074 1.00333 0.99325 0.96481 1.21387 0.95837 0.97467 0.96013 1.21527 0.93912 1.00105 1.00744 1.21279 1.01111 0.95656 0.93639 1.21617 0.94443 1.03702 1.00975 1.18967 0.85745 0.77761 0.78665 1.90864 1.11778 1.66540 1.74814 1.87589 1.22519 1.65409 1.47636 0.94601 0.94420 0.92200 0.92991 0.84334 0.92892 0.90463 0.86047 0.83835 0.82811 0.82111 0.83123 0.84368 0.85747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.90 8.94 71.98 0.64 -6.25 16 2 C 0.22 10.58 2.57 44.16 0.11 10.70 16 3 H 0.00 0.04 7.80 -2.39 -0.02 0.02 16 4 C -0.52 -28.89 8.84 25.60 0.23 -28.66 16 5 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -52.61 11.32 21.45 0.24 -52.36 16 8 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 N -0.69 -27.32 6.23 -495.47 -3.09 -30.41 16 13 C 0.05 1.58 5.03 86.30 0.43 2.02 16 14 C 0.08 1.73 4.03 30.96 0.12 1.85 16 15 H 0.15 2.46 8.14 -2.39 -0.02 2.44 16 16 C 0.07 1.10 6.13 86.64 0.53 1.63 16 17 N -0.57 -14.05 3.16 -759.38 -2.40 -16.45 16 18 C 0.16 3.72 6.63 38.15 0.25 3.97 16 19 C -0.15 -2.36 9.49 22.39 0.21 -2.15 16 20 C -0.09 -1.11 10.04 22.25 0.22 -0.89 16 21 C -0.14 -2.04 10.04 22.29 0.22 -1.81 16 22 C -0.10 -1.91 10.04 22.25 0.22 -1.69 16 23 C -0.19 -4.92 9.31 22.39 0.21 -4.71 16 24 C 0.63 21.63 8.78 129.91 1.14 22.77 16 25 O -0.55 -22.71 14.74 19.63 0.29 -22.42 16 26 O -0.32 -11.03 10.82 -50.21 -0.54 -11.58 16 27 H 0.03 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.04 1.37 7.45 -2.39 -0.02 1.36 16 29 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 30 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.34 11.91 8.47 -89.69 -0.76 11.15 16 32 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 33 H 0.08 1.83 7.44 -2.39 -0.02 1.82 16 34 H 0.12 1.48 7.73 -2.39 -0.02 1.46 16 35 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.15 1.45 7.31 -2.91 -0.02 1.43 16 37 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.12 4.08 5.24 -2.91 -0.02 4.07 16 Total: -1.00 -75.04 332.59 1.83 -73.21 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.30 Total: 15.51 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.01 Total: -2.21 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -5.25 Total: -99.22 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.25 Total: -34.00 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -75.04 1.83 -73.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.459 kcal (2) G-P(sol) polarization free energy of solvation -75.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds