Wall clock time and date at job start Tue Mar 31 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46906 * 2 1 4 4 C 1.50698 * 109.47303 * 119.99606 * 2 1 3 5 5 H 1.07999 * 119.99923 * 119.99879 * 4 2 1 6 6 C 1.37879 * 119.99872 * 300.00633 * 4 2 1 7 7 N 1.31509 * 120.00173 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99530 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47606 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47157 * 119.99916 * 8 6 4 11 11 H 1.48504 * 109.47098 * 239.99534 * 8 6 4 12 12 N 1.46897 * 109.47059 * 240.00252 * 2 1 3 13 13 C 1.46896 * 111.00641 * 84.99836 * 12 2 1 14 14 C 1.53000 * 109.47335 * 179.97438 * 13 12 2 15 15 H 1.08996 * 110.46521 * 303.82178 * 14 13 12 16 16 C 1.54091 * 110.63969 * 181.11219 * 14 13 12 17 17 N 1.47093 * 103.78022 * 241.31232 * 16 14 13 18 18 C 1.39948 * 125.55975 * 180.02562 * 17 16 14 19 19 C 1.38861 * 120.07142 * 359.72985 * 18 17 16 20 20 C 1.38109 * 119.92817 * 179.76730 * 19 18 17 21 21 C 1.38283 * 120.07362 * 0.50405 * 20 19 18 22 22 C 1.38281 * 120.13815 * 359.74400 * 21 20 19 23 23 C 1.38119 * 120.06807 * 0.02562 * 22 21 20 24 24 C 1.34010 * 108.87966 * 0.02562 * 17 16 14 25 25 O 1.21510 * 123.07023 * 180.27070 * 24 17 16 26 26 O 1.33784 * 113.85273 * 359.97438 * 24 17 16 27 27 H 1.08995 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47291 * 300.00449 * 1 2 3 29 29 H 1.08999 * 109.47060 * 60.00192 * 1 2 3 30 30 H 0.97005 * 120.00070 * 180.02562 * 7 6 4 31 31 H 1.00903 * 110.99721 * 321.03821 * 12 2 1 32 32 H 1.09005 * 109.47096 * 60.00073 * 13 12 2 33 33 H 1.08998 * 109.47053 * 300.00187 * 13 12 2 34 34 H 1.09005 * 110.56060 * 359.88248 * 16 14 13 35 35 H 1.08993 * 110.56784 * 122.73854 * 16 14 13 36 36 H 1.08003 * 120.03470 * 359.97438 * 19 18 17 37 37 H 1.08010 * 119.96600 * 180.23070 * 20 19 18 38 38 H 1.07998 * 119.93343 * 179.77065 * 21 20 19 39 39 H 1.07993 * 119.96628 * 179.97438 * 22 21 20 40 40 H 1.08000 * 120.03478 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8302 2.6033 8 14 2.3214 -1.1202 4.0079 9 1 3.1455 -2.2874 3.6038 10 1 3.1466 -0.1871 4.8165 11 1 1.1661 -1.5865 4.8161 12 7 2.0196 -0.6924 -1.1994 13 6 2.0824 0.2226 -2.3469 14 6 2.5962 -0.5330 -3.5742 15 1 3.5626 -0.9907 -3.3629 16 6 2.6991 0.4098 -4.7887 17 7 1.7729 -0.1784 -5.7683 18 6 1.5148 0.3247 -7.0485 19 6 2.1541 1.4776 -7.4849 20 6 1.9009 1.9688 -8.7506 21 6 1.0040 1.3198 -9.5792 22 6 0.3619 0.1744 -9.1457 23 6 0.6144 -0.3246 -7.8828 24 6 1.2164 -1.2747 -5.2350 25 8 0.4116 -1.9653 -5.8282 26 8 1.6327 -1.5427 -3.9922 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.7093 1.1619 3.4844 31 1 1.4495 -1.4979 -1.4100 32 1 2.7589 1.0462 -2.1183 33 1 1.0871 0.6163 -2.5526 34 1 2.3821 1.4174 -4.5191 35 1 3.7159 0.4194 -5.1810 36 1 2.8511 1.9877 -6.8364 37 1 2.4006 2.8635 -9.0920 38 1 0.8049 1.7080 -10.5671 39 1 -0.3383 -0.3300 -9.7949 40 1 0.1123 -1.2190 -7.5446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878817284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:00 Heat of formation + Delta-G solvation = -33.445627 kcal Electronic energy + Delta-G solvation = -22588.976945 eV Core-core repulsion = 19176.256241 eV Total energy + Delta-G solvation = -3412.720704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.06113 -39.30910 -37.64198 -35.98007 -35.64452 -32.88538 -31.26734 -31.06825 -29.92078 -27.87244 -25.26842 -24.82991 -23.88972 -22.84184 -21.88089 -20.84286 -20.21130 -18.29820 -17.44996 -17.00132 -16.62658 -16.20589 -15.51363 -15.24693 -14.80397 -14.56453 -14.33858 -14.20722 -14.00888 -13.64457 -13.54612 -13.26764 -12.77645 -12.60759 -12.28310 -12.03483 -11.68003 -11.60524 -11.47687 -10.99156 -10.88973 -10.72892 -10.57845 -10.44959 -10.30402 -10.19428 -9.90665 -9.19557 -9.06574 -8.41149 -8.23580 -7.42019 -6.03231 -4.06699 1.04848 1.16281 2.12492 2.59412 3.25262 3.29623 3.37605 3.42920 3.61753 3.87069 4.25815 4.40891 4.50756 4.69268 4.81129 4.89956 5.01819 5.13846 5.17243 5.21194 5.28843 5.29632 5.45226 5.54582 5.83155 5.84872 5.98556 6.12328 6.22152 6.26945 6.34233 6.62526 6.79763 6.81727 7.01604 7.17086 7.24111 7.68583 7.79536 7.81397 8.17844 8.40146 8.51042 9.00620 9.58977 11.03955 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038019 B = 0.002922 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.296167 B = 9580.546693 C = 9773.782798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.496 4.496 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.681 5.681 13 C 0.053 3.947 14 C 0.074 3.926 15 H 0.130 0.870 16 C 0.065 3.935 17 N -0.572 5.572 18 C 0.187 3.813 19 C -0.158 4.158 20 C -0.092 4.092 21 C -0.149 4.149 22 C -0.090 4.090 23 C -0.156 4.156 24 C 0.645 3.355 25 O -0.509 6.509 26 O -0.308 6.308 27 H 0.030 0.970 28 H 0.090 0.910 29 H 0.004 0.996 30 H 0.260 0.740 31 H 0.335 0.665 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.577 3.677 -21.616 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.311 5.311 13 C -0.078 4.078 14 C 0.018 3.982 15 H 0.147 0.853 16 C -0.058 4.058 17 N -0.308 5.308 18 C 0.094 3.906 19 C -0.178 4.178 20 C -0.110 4.110 21 C -0.168 4.168 22 C -0.108 4.108 23 C -0.177 4.177 24 C 0.401 3.599 25 O -0.394 6.394 26 O -0.218 6.218 27 H 0.049 0.951 28 H 0.109 0.891 29 H 0.023 0.977 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.110 0.890 33 H 0.049 0.951 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.705 3.272 -21.329 21.894 hybrid contribution -0.600 -0.056 0.737 0.953 sum 3.105 3.217 -20.592 21.071 Atomic orbital electron populations 1.22439 1.00540 0.99479 1.00486 1.19199 0.89748 0.94359 0.86255 0.94781 1.21170 1.30307 1.12518 0.89458 0.91754 1.24956 0.95278 0.95200 0.99126 1.69889 1.37280 1.23208 1.23345 0.86431 0.78528 0.79649 0.82732 1.19685 1.21132 1.21178 1.60874 1.58548 1.08965 1.02760 1.22267 0.99797 0.95903 0.89796 1.24258 0.93315 0.86684 0.93918 0.85276 1.23100 0.95340 0.99548 0.87856 1.45474 1.43837 1.27155 1.14363 1.17472 0.96882 0.94149 0.82128 1.20743 1.03043 0.96274 0.97785 1.20918 0.97612 0.99471 0.93041 1.21143 0.98597 0.96779 1.00251 1.21069 0.98802 0.95786 0.95190 1.21673 0.99202 1.02706 0.94073 1.18576 0.80338 0.80250 0.80747 1.90907 1.34730 1.52756 1.60965 1.87416 1.57491 1.48993 1.27857 0.95128 0.89127 0.97731 0.93063 0.84815 0.88982 0.95091 0.87956 0.87994 0.85549 0.85536 0.85971 0.85533 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.94 37.16 0.33 -3.74 16 2 C 0.21 5.13 2.57 -68.87 -0.18 4.95 16 3 H 0.03 0.89 7.80 -51.92 -0.40 0.48 16 4 C -0.50 -13.42 8.84 -34.44 -0.30 -13.72 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.26 11.32 55.43 0.63 -24.63 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.68 -13.65 6.23 -107.95 -0.67 -14.33 16 13 C 0.05 0.81 5.06 -3.83 -0.02 0.79 16 14 C 0.07 0.91 4.09 -26.16 -0.11 0.81 16 15 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 16 C 0.06 0.61 6.13 -3.15 -0.02 0.59 16 17 N -0.57 -7.17 3.16 -118.27 -0.37 -7.54 16 18 C 0.19 2.23 6.63 -83.69 -0.56 1.68 16 19 C -0.16 -1.48 9.49 -39.40 -0.37 -1.85 16 20 C -0.09 -0.75 10.04 -39.61 -0.40 -1.15 16 21 C -0.15 -1.25 10.04 -39.55 -0.40 -1.64 16 22 C -0.09 -0.88 10.04 -39.61 -0.40 -1.28 16 23 C -0.16 -1.94 9.31 -39.39 -0.37 -2.30 16 24 C 0.65 10.18 8.77 53.71 0.47 10.66 16 25 O -0.51 -9.29 14.74 -19.12 -0.28 -9.57 16 26 O -0.31 -4.86 10.43 -37.86 -0.40 -5.26 16 27 H 0.03 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 29 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.33 6.82 8.14 -39.29 -0.32 6.50 16 32 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 33 H 0.03 0.51 7.44 -51.93 -0.39 0.12 16 34 H 0.10 0.83 7.74 -51.93 -0.40 0.43 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.13 0.92 7.31 -52.48 -0.38 0.53 16 37 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 38 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.16 2.24 5.24 -52.49 -0.28 1.96 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -31.27 331.97 -8.89 -40.16 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.37 Total: 4.78 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.41 Total: -4.80 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.42 Total: -46.50 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.68 Total: -14.82 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.27 -8.89 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878817284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.717 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds