Wall clock time and date at job start Tue Mar 31 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.55288 * 2 1 4 4 C 1.54998 * 110.61645 * 237.12753 * 2 1 3 5 5 C 1.54812 * 102.09112 * 204.47384 * 4 2 1 6 6 H 1.09005 * 110.48533 * 139.55395 * 5 4 2 7 7 C 1.52997 * 110.48767 * 262.20241 * 5 4 2 8 8 C 1.54100 * 104.18569 * 20.88219 * 5 4 2 9 9 H 1.09002 * 109.87833 * 121.60471 * 8 5 4 10 10 C 1.50705 * 109.87564 * 242.60176 * 8 5 4 11 11 O 1.21277 * 119.99955 * 114.99759 * 10 8 5 12 12 N 1.34774 * 119.99961 * 295.00228 * 10 8 5 13 13 C 1.39270 * 119.99936 * 184.32518 * 12 10 8 14 14 C 1.39666 * 119.57797 * 174.84580 * 13 12 10 15 15 C 1.38660 * 119.49906 * 179.97438 * 14 13 12 16 16 C 1.38344 * 118.66625 * 359.97438 * 15 14 13 17 17 C 1.40576 * 119.13154 * 359.97438 * 16 15 14 18 18 C 1.41335 * 119.78742 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00101 * 0.02562 * 18 17 16 20 20 C 1.40029 * 120.00029 * 180.02562 * 18 17 16 21 21 N 1.30744 * 120.00242 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99962 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47559 * 90.00119 * 22 20 18 24 24 H 1.48506 * 109.46943 * 209.99846 * 22 20 18 25 25 H 1.48501 * 109.46989 * 329.99447 * 22 20 18 26 26 N 1.31912 * 119.57274 * 354.57454 * 13 12 10 27 27 O 1.43741 * 107.29729 * 2.02740 * 8 5 4 28 28 H 1.09001 * 109.47101 * 182.87407 * 1 2 3 29 29 H 1.09002 * 109.47202 * 302.87502 * 1 2 3 30 30 H 1.09002 * 109.47527 * 62.87427 * 1 2 3 31 31 H 1.08999 * 110.91289 * 86.27188 * 4 2 1 32 32 H 1.09008 * 110.90454 * 322.67067 * 4 2 1 33 33 H 1.09002 * 109.46919 * 174.76697 * 7 5 4 34 34 H 1.09000 * 109.46749 * 294.76544 * 7 5 4 35 35 H 1.08993 * 109.47071 * 54.76370 * 7 5 4 36 36 H 0.97001 * 120.00247 * 4.60692 * 12 10 8 37 37 H 1.08001 * 120.25198 * 359.97438 * 14 13 12 38 38 H 1.07994 * 120.66241 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.43617 * 179.97438 * 16 15 14 40 40 H 0.97000 * 120.00152 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7874 -1.2184 5 6 3.4795 -1.2155 -0.7255 6 1 3.6974 -2.2376 -1.0357 7 6 4.5479 -0.2553 -1.2521 8 6 3.3839 -1.1267 0.8100 9 1 3.6071 -2.0978 1.2520 10 6 4.3537 -0.0945 1.3248 11 8 3.9406 0.9086 1.8669 12 7 5.6802 -0.2862 1.1828 13 6 6.5784 0.6223 1.7375 14 6 7.9489 0.3598 1.6792 15 6 8.8417 1.2657 2.2314 16 6 8.3426 2.4103 2.8271 17 6 6.9525 2.6179 2.8529 18 6 6.4276 3.7826 3.4573 19 1 7.0940 4.5100 3.8971 20 6 5.0436 3.9937 3.4860 21 7 4.2369 3.1135 2.9532 22 14 4.3500 5.5335 4.2843 23 1 4.2429 6.6121 3.2692 24 1 3.0038 5.2402 4.8386 25 1 5.2515 5.9722 5.3797 26 7 6.1239 1.7222 2.3064 27 8 2.0384 -0.7371 1.1326 28 1 -0.3633 -1.0264 0.0515 29 1 -0.3634 0.5578 0.8631 30 1 -0.3634 0.4686 -0.9146 31 1 2.1508 -0.1444 -2.0953 32 1 1.4548 -1.6584 -1.4285 33 1 5.5147 -0.5159 -0.8214 34 1 4.6014 -0.3316 -2.3381 35 1 4.2886 0.7656 -0.9720 36 1 6.0093 -1.0546 0.6908 37 1 8.3106 -0.5419 1.2075 38 1 9.9053 1.0818 2.1965 39 1 9.0121 3.1348 3.2665 40 1 3.2782 3.2595 2.9734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:50 Heat of formation + Delta-G solvation = -16.899908 kcal Electronic energy + Delta-G solvation = -24101.605358 eV Core-core repulsion = 20689.602130 eV Total energy + Delta-G solvation = -3412.003228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44932 -38.55783 -36.98549 -34.35428 -33.49405 -32.70115 -31.93114 -30.27993 -29.07813 -26.70410 -26.57972 -25.37736 -22.55013 -21.50950 -20.93042 -20.52624 -19.16273 -17.70586 -16.60043 -16.25838 -15.99984 -15.65296 -14.65248 -14.44989 -14.31737 -14.18083 -13.71945 -13.49516 -13.04479 -12.82009 -12.56834 -12.45217 -12.25635 -11.96607 -11.86770 -11.80751 -11.35373 -11.13662 -10.93218 -10.82865 -10.77680 -10.63047 -10.58500 -10.43328 -9.94563 -9.86743 -9.57163 -8.96815 -8.63404 -7.93850 -7.15351 -6.92060 -6.11082 -4.37676 2.80175 3.09166 3.19182 3.21511 3.28514 3.63172 3.77498 4.08424 4.11329 4.49950 4.68761 4.94833 4.97139 5.03988 5.28997 5.39546 5.42903 5.56749 5.63816 5.68444 5.77673 5.81712 5.95875 6.06206 6.09052 6.14589 6.15948 6.23422 6.42933 6.50519 6.69661 6.85000 6.87063 7.03307 7.26270 7.57741 7.65296 7.83281 8.08601 8.23080 8.48501 8.77234 9.07447 9.31089 10.27450 10.50853 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.006653 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.216249 B = 4207.316261 C = 5801.176027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.078 0.922 4 C -0.145 4.145 5 C -0.115 4.115 6 H 0.088 0.912 7 C -0.159 4.159 8 C 0.063 3.937 9 H 0.108 0.892 10 C 0.456 3.544 11 O -0.392 6.392 12 N -0.666 5.666 13 C 0.372 3.628 14 C -0.359 4.359 15 C -0.036 4.036 16 C -0.306 4.306 17 C 0.271 3.729 18 C -0.425 4.425 19 H 0.082 0.918 20 C 0.058 3.942 21 N -0.654 5.654 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.264 1.264 26 N -0.473 5.473 27 O -0.343 6.343 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.398 0.602 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.958 -8.558 -8.736 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 H 0.095 0.905 4 C -0.183 4.183 5 C -0.134 4.134 6 H 0.106 0.894 7 C -0.217 4.217 8 C 0.001 3.999 9 H 0.126 0.874 10 C 0.236 3.764 11 O -0.254 6.254 12 N -0.317 5.317 13 C 0.133 3.867 14 C -0.385 4.385 15 C -0.060 4.060 16 C -0.329 4.329 17 C 0.146 3.854 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.172 4.172 21 N -0.272 5.272 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.188 1.188 26 N -0.192 5.192 27 O -0.260 6.260 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.652 -7.723 -8.108 13.024 hybrid contribution 1.051 0.020 -0.122 1.058 sum -5.602 -7.703 -8.230 12.588 Atomic orbital electron populations 1.21734 0.93378 1.02492 1.02381 1.23166 0.94842 0.96285 0.84434 0.90454 1.23258 0.95475 1.00645 0.98907 1.22446 0.96410 1.00924 0.93621 0.89363 1.22237 0.98800 0.99915 1.00700 1.22825 0.84542 0.97597 0.94958 0.87439 1.21135 0.83056 0.89430 0.82732 1.91154 1.76003 1.24285 1.33958 1.43791 1.05696 1.26821 1.55385 1.18650 0.85683 0.89902 0.92455 1.20489 0.92258 1.04613 1.21091 1.20551 0.96825 0.93592 0.95080 1.21613 0.96656 1.00837 1.13829 1.18389 0.87057 0.91285 0.88705 1.19578 0.91949 1.03254 1.30787 0.90015 1.26175 0.97766 0.97388 0.95837 1.70307 1.03942 1.28409 1.24574 0.86538 0.78932 0.82477 0.80148 1.19705 1.20296 1.18763 1.68721 1.35239 1.00766 1.14486 1.88938 1.24531 1.72871 1.39689 0.92093 0.91724 0.91367 0.90168 0.90555 0.90870 0.92465 0.91637 0.76676 0.89195 0.88719 0.88656 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.65 37.16 0.36 -1.31 16 2 C 0.07 1.02 3.88 -25.68 -0.10 0.92 16 3 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 4 C -0.15 -1.65 6.15 -24.72 -0.15 -1.80 16 5 C -0.12 -1.38 3.64 -89.09 -0.32 -1.71 16 6 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 7 C -0.16 -2.12 7.83 37.16 0.29 -1.82 16 8 C 0.06 0.98 3.89 -27.31 -0.11 0.87 16 9 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 10 C 0.46 9.30 5.49 -10.98 -0.06 9.24 16 11 O -0.39 -10.07 12.26 -14.01 -0.17 -10.24 16 12 N -0.67 -12.96 3.89 -11.40 -0.04 -13.00 16 13 C 0.37 9.05 7.43 -154.97 -1.15 7.90 16 14 C -0.36 -8.05 9.95 -38.89 -0.39 -8.44 16 15 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 16 C -0.31 -7.79 9.83 -38.66 -0.38 -8.17 16 17 C 0.27 7.68 6.55 -85.00 -0.56 7.12 16 18 C -0.43 -11.84 9.14 -37.73 -0.34 -12.19 16 19 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 20 C 0.06 1.54 5.50 -17.34 -0.10 1.44 16 21 N -0.65 -18.40 8.99 55.55 0.50 -17.90 16 22 Si 0.89 19.59 29.56 -169.99 -5.02 14.57 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 26 N -0.47 -13.35 5.74 -10.26 -0.06 -13.41 16 27 O -0.34 -5.96 10.45 -54.81 -0.57 -6.53 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 32 H 0.08 0.74 8.06 -51.92 -0.42 0.32 16 33 H 0.07 0.99 5.00 -51.93 -0.26 0.73 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.11 7.49 -51.93 -0.39 0.72 16 36 H 0.40 5.97 7.14 -40.82 -0.29 5.68 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 40 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -33.29 324.14 -9.44 -42.72 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.54 Total: 8.09 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -3.41 Total: -9.18 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.40 Total: -44.31 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.74 Total: -16.77 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.29 -9.44 -42.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.824 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds