Wall clock time and date at job start Tue Mar 31 2020 06:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.55288 * 2 1 4 4 C 1.54998 * 110.61645 * 237.12753 * 2 1 3 5 5 C 1.54812 * 102.09112 * 204.47384 * 4 2 1 6 6 H 1.09005 * 110.48533 * 139.55395 * 5 4 2 7 7 C 1.52997 * 110.48767 * 262.20241 * 5 4 2 8 8 C 1.54100 * 104.18569 * 20.88219 * 5 4 2 9 9 H 1.09002 * 109.87833 * 121.60471 * 8 5 4 10 10 C 1.50705 * 109.87564 * 242.60176 * 8 5 4 11 11 O 1.21277 * 119.99955 * 114.99759 * 10 8 5 12 12 N 1.34774 * 119.99961 * 295.00228 * 10 8 5 13 13 C 1.39270 * 119.99936 * 184.32518 * 12 10 8 14 14 C 1.39666 * 119.57797 * 174.84580 * 13 12 10 15 15 C 1.38660 * 119.49906 * 179.97438 * 14 13 12 16 16 C 1.38344 * 118.66625 * 359.97438 * 15 14 13 17 17 C 1.40576 * 119.13154 * 359.97438 * 16 15 14 18 18 C 1.41335 * 119.78742 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00101 * 0.02562 * 18 17 16 20 20 C 1.40029 * 120.00029 * 180.02562 * 18 17 16 21 21 N 1.30744 * 120.00242 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99962 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47559 * 90.00119 * 22 20 18 24 24 H 1.48506 * 109.46943 * 209.99846 * 22 20 18 25 25 H 1.48501 * 109.46989 * 329.99447 * 22 20 18 26 26 N 1.31912 * 119.57274 * 354.57454 * 13 12 10 27 27 O 1.43741 * 107.29729 * 2.02740 * 8 5 4 28 28 H 1.09001 * 109.47101 * 182.87407 * 1 2 3 29 29 H 1.09002 * 109.47202 * 302.87502 * 1 2 3 30 30 H 1.09002 * 109.47527 * 62.87427 * 1 2 3 31 31 H 1.08999 * 110.91289 * 86.27188 * 4 2 1 32 32 H 1.09008 * 110.90454 * 322.67067 * 4 2 1 33 33 H 1.09002 * 109.46919 * 174.76697 * 7 5 4 34 34 H 1.09000 * 109.46749 * 294.76544 * 7 5 4 35 35 H 1.08993 * 109.47071 * 54.76370 * 7 5 4 36 36 H 0.97001 * 120.00247 * 4.60692 * 12 10 8 37 37 H 1.08001 * 120.25198 * 359.97438 * 14 13 12 38 38 H 1.07994 * 120.66241 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.43617 * 179.97438 * 16 15 14 40 40 H 0.97000 * 120.00152 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7874 -1.2184 5 6 3.4795 -1.2155 -0.7255 6 1 3.6974 -2.2376 -1.0357 7 6 4.5479 -0.2553 -1.2521 8 6 3.3839 -1.1267 0.8100 9 1 3.6071 -2.0978 1.2520 10 6 4.3537 -0.0945 1.3248 11 8 3.9406 0.9086 1.8669 12 7 5.6802 -0.2862 1.1828 13 6 6.5784 0.6223 1.7375 14 6 7.9489 0.3598 1.6792 15 6 8.8417 1.2657 2.2314 16 6 8.3426 2.4103 2.8271 17 6 6.9525 2.6179 2.8529 18 6 6.4276 3.7826 3.4573 19 1 7.0940 4.5100 3.8971 20 6 5.0436 3.9937 3.4860 21 7 4.2369 3.1135 2.9532 22 14 4.3500 5.5335 4.2843 23 1 4.2429 6.6121 3.2692 24 1 3.0038 5.2402 4.8386 25 1 5.2515 5.9722 5.3797 26 7 6.1239 1.7222 2.3064 27 8 2.0384 -0.7371 1.1326 28 1 -0.3633 -1.0264 0.0515 29 1 -0.3634 0.5578 0.8631 30 1 -0.3634 0.4686 -0.9146 31 1 2.1508 -0.1444 -2.0953 32 1 1.4548 -1.6584 -1.4285 33 1 5.5147 -0.5159 -0.8214 34 1 4.6014 -0.3316 -2.3381 35 1 4.2886 0.7656 -0.9720 36 1 6.0093 -1.0546 0.6908 37 1 8.3106 -0.5419 1.2075 38 1 9.9053 1.0818 2.1965 39 1 9.0121 3.1348 3.2665 40 1 3.2782 3.2595 2.9734 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:50 Heat of formation + Delta-G solvation = -37.404686 kcal Electronic energy + Delta-G solvation = -24102.494512 eV Core-core repulsion = 20689.602130 eV Total energy + Delta-G solvation = -3412.892382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.80706 -40.21821 -38.66542 -36.05151 -35.16088 -34.18718 -33.05734 -32.20890 -30.90116 -28.01064 -27.73898 -27.16533 -24.10517 -23.26965 -22.43936 -21.67596 -20.73047 -19.53336 -18.14340 -17.81735 -17.20291 -17.07318 -16.42173 -16.26611 -15.71190 -15.62742 -15.50840 -14.73640 -14.62136 -14.32681 -14.08998 -13.74933 -13.56546 -13.37084 -13.17538 -12.92053 -12.90851 -12.74610 -12.58660 -12.46570 -12.31587 -11.93927 -11.86805 -11.78106 -11.67678 -11.34777 -11.13862 -10.81176 -10.25217 -9.89289 -9.02887 -8.78345 -8.05810 -6.43152 0.92144 1.25433 1.35954 1.48501 1.50711 2.11638 2.23682 2.25951 2.89711 2.99983 3.47086 3.68422 3.73979 4.02251 4.05682 4.13072 4.34446 4.38437 4.39184 4.54200 4.59423 4.70542 4.76889 4.79473 4.87561 4.90098 4.95852 5.00459 5.06201 5.12277 5.15746 5.25006 5.26516 5.36948 5.68220 5.84142 5.88821 5.93125 6.14422 6.38340 6.73844 6.85486 7.07698 7.72649 8.35631 8.55127 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.006653 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.216249 B = 4207.316261 C = 5801.176027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.058 3.942 3 H 0.032 0.968 4 C -0.133 4.133 5 C -0.104 4.104 6 H 0.136 0.864 7 C -0.154 4.154 8 C 0.066 3.934 9 H 0.138 0.862 10 C 0.447 3.553 11 O -0.453 6.453 12 N -0.650 5.650 13 C 0.349 3.651 14 C -0.345 4.345 15 C -0.034 4.034 16 C -0.331 4.331 17 C 0.237 3.763 18 C -0.468 4.468 19 H 0.085 0.915 20 C 0.011 3.989 21 N -0.690 5.690 22 Si 0.972 3.028 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.254 1.254 26 N -0.509 5.509 27 O -0.370 6.370 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.016 0.984 36 H 0.420 0.580 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 -11.025 -10.549 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.001 3.999 3 H 0.051 0.949 4 C -0.171 4.171 5 C -0.123 4.123 6 H 0.154 0.846 7 C -0.212 4.212 8 C 0.004 3.996 9 H 0.156 0.844 10 C 0.231 3.769 11 O -0.319 6.319 12 N -0.303 5.303 13 C 0.110 3.890 14 C -0.370 4.370 15 C -0.059 4.059 16 C -0.354 4.354 17 C 0.111 3.889 18 C -0.499 4.499 19 H 0.103 0.897 20 C -0.215 4.215 21 N -0.309 5.309 22 Si 0.793 3.207 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.178 1.178 26 N -0.228 5.228 27 O -0.288 6.288 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.035 0.965 36 H 0.260 0.740 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.121 0.879 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.351 -10.246 -9.958 15.636 hybrid contribution 1.094 0.657 0.364 1.327 sum -5.257 -9.589 -9.595 14.548 Atomic orbital electron populations 1.21729 0.91316 1.03528 1.02794 1.23293 0.96519 0.94504 0.85549 0.94940 1.23256 0.95120 1.01309 0.97366 1.22524 0.96315 1.02974 0.90458 0.84638 1.22173 0.98966 0.97466 1.02564 1.23008 0.82487 0.96440 0.97672 0.84435 1.22228 0.83657 0.89702 0.81344 1.91147 1.76967 1.27099 1.36637 1.43760 1.05215 1.26561 1.54804 1.19206 0.87619 0.89894 0.92304 1.20995 0.91331 1.05541 1.19124 1.21038 0.99128 0.92295 0.93399 1.21793 0.95789 1.02564 1.15259 1.18882 0.88657 0.91975 0.89395 1.19889 0.92981 1.04183 1.32802 0.89699 1.27042 0.97683 1.00658 0.96092 1.70537 1.03575 1.30479 1.26323 0.85362 0.77947 0.78093 0.79249 1.18927 1.20091 1.17762 1.68686 1.36461 1.02168 1.15530 1.88919 1.25249 1.72906 1.41706 0.90344 0.93606 0.89001 0.89105 0.87456 0.91238 0.89624 0.96468 0.73982 0.84846 0.84528 0.87928 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.65 71.98 0.69 -2.40 16 2 C 0.06 1.70 3.88 31.28 0.12 1.83 16 3 H 0.03 1.21 8.14 -2.38 -0.02 1.20 16 4 C -0.13 -2.63 6.15 31.90 0.20 -2.44 16 5 C -0.10 -2.17 3.64 -9.80 -0.04 -2.20 16 6 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16 7 C -0.15 -3.84 7.83 71.98 0.56 -3.27 16 8 C 0.07 1.96 3.89 30.22 0.12 2.07 16 9 H 0.14 3.23 8.14 -2.39 -0.02 3.21 16 10 C 0.45 18.63 5.49 87.66 0.48 19.12 16 11 O -0.45 -24.75 12.26 15.70 0.19 -24.56 16 12 N -0.65 -25.02 3.89 -308.36 -1.20 -26.22 16 13 C 0.35 17.07 7.43 133.25 0.99 18.06 16 14 C -0.34 -14.75 9.95 22.72 0.23 -14.52 16 15 C -0.03 -1.51 10.15 22.40 0.23 -1.29 16 16 C -0.33 -17.11 9.83 22.87 0.22 -16.88 16 17 C 0.24 14.04 6.55 40.19 0.26 14.30 16 18 C -0.47 -27.49 9.14 23.47 0.21 -27.27 16 19 H 0.08 4.67 7.85 -2.91 -0.02 4.65 16 20 C 0.01 0.59 5.50 85.29 0.47 1.06 16 21 N -0.69 -41.53 8.99 21.84 0.20 -41.33 16 22 Si 0.97 42.39 29.56 68.60 2.03 44.42 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 26 N -0.51 -29.97 5.74 -186.36 -1.07 -31.04 16 27 O -0.37 -12.87 10.45 -130.26 -1.36 -14.24 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 1.63 7.86 -2.39 -0.02 1.61 16 32 H 0.11 1.53 8.06 -2.38 -0.02 1.51 16 33 H 0.07 1.74 5.00 -2.39 -0.01 1.73 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.02 0.57 7.49 -2.39 -0.02 0.56 16 36 H 0.42 11.62 7.14 -92.71 -0.66 10.96 16 37 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.14 4.80 8.06 -2.91 -0.02 4.77 16 39 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 Total: -1.00 -80.30 324.14 3.93 -76.36 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: 0.39 Total: 30.45 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 4.75 Total: -13.85 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -2.07 Total: -98.59 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.17 Total: -38.79 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -80.30 3.93 -76.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.958 kcal (2) G-P(sol) polarization free energy of solvation -80.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds