Wall clock time and date at job start Tue Mar 31 2020 06:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 110.55584 * 2 1 4 4 C 1.54993 * 110.61984 * 237.11659 * 2 1 3 5 5 C 1.54813 * 102.09582 * 204.31784 * 4 2 1 6 6 H 1.09004 * 110.49078 * 262.20734 * 5 4 2 7 7 C 1.53000 * 110.48800 * 139.55921 * 5 4 2 8 8 C 1.54097 * 104.18637 * 20.88155 * 5 4 2 9 9 H 1.08998 * 109.88230 * 121.60146 * 8 5 4 10 10 C 1.50702 * 109.88133 * 242.60655 * 8 5 4 11 11 O 1.21276 * 120.00085 * 114.99907 * 10 8 5 12 12 N 1.34778 * 119.99874 * 294.99830 * 10 8 5 13 13 C 1.39267 * 120.00066 * 185.13855 * 12 10 8 14 14 C 1.39673 * 119.57682 * 174.64543 * 13 12 10 15 15 C 1.38655 * 119.49521 * 180.02562 * 14 13 12 16 16 C 1.38339 * 118.67171 * 359.97438 * 15 14 13 17 17 C 1.40578 * 119.12934 * 0.02562 * 16 15 14 18 18 C 1.41340 * 119.78760 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99975 * 359.97438 * 18 17 16 20 20 C 1.40033 * 120.00101 * 179.97438 * 18 17 16 21 21 N 1.30739 * 119.99875 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00162 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46960 * 59.99904 * 22 20 18 24 24 H 1.48492 * 109.47380 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46930 * 300.00161 * 22 20 18 26 26 N 1.31907 * 119.57311 * 354.66901 * 13 12 10 27 27 O 1.43751 * 107.29240 * 2.02939 * 8 5 4 28 28 H 1.09002 * 109.47050 * 182.87951 * 1 2 3 29 29 H 1.08996 * 109.47685 * 302.88234 * 1 2 3 30 30 H 1.09004 * 109.47042 * 62.88580 * 1 2 3 31 31 H 1.09005 * 110.90510 * 86.12344 * 4 2 1 32 32 H 1.08993 * 110.91252 * 322.51871 * 4 2 1 33 33 H 1.08998 * 109.46899 * 305.23189 * 7 5 4 34 34 H 1.08993 * 109.47017 * 65.23840 * 7 5 4 35 35 H 1.09002 * 109.46566 * 185.23436 * 7 5 4 36 36 H 0.96998 * 119.99955 * 5.14172 * 12 10 8 37 37 H 1.07996 * 120.24950 * 0.04271 * 14 13 12 38 38 H 1.08000 * 120.66149 * 179.97438 * 15 14 13 39 39 H 1.07999 * 120.43481 * 180.02562 * 16 15 14 40 40 H 0.97001 * 119.99980 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2182 5 6 3.4811 -1.2122 -0.7268 6 1 4.2403 -0.5268 -1.1037 7 6 3.7895 -2.6465 -1.1611 8 6 3.3875 -1.1218 0.8087 9 1 3.6133 -2.0918 1.2515 10 6 4.3557 -0.0869 1.3211 11 8 3.9411 0.9159 1.8627 12 7 5.6824 -0.2758 1.1776 13 6 6.5796 0.6260 1.7445 14 6 7.9501 0.3631 1.6874 15 6 8.8418 1.2618 2.2529 16 6 8.3418 2.3999 2.8601 17 6 6.9517 2.6077 2.8849 18 6 6.4258 3.7659 3.5011 19 1 7.0914 4.4876 3.9512 20 6 5.0419 3.9777 3.5279 21 7 4.2362 3.1039 2.9833 22 14 4.3469 5.5088 4.3416 23 1 4.8816 6.7163 3.6625 24 1 2.8658 5.4968 4.2355 25 1 4.7410 5.5307 5.7731 26 7 6.1239 1.7173 2.3289 27 8 2.0415 -0.7347 1.1327 28 1 -0.3633 -1.0264 0.0516 29 1 -0.3634 0.5579 0.8630 30 1 -0.3633 0.4684 -0.9148 31 1 2.1483 -0.1452 -2.0959 32 1 1.4566 -1.6600 -1.4266 33 1 2.9965 -3.3093 -0.8149 34 1 3.8521 -2.6914 -2.2483 35 1 4.7399 -2.9603 -0.7292 36 1 6.0124 -1.0399 0.6794 37 1 8.3126 -0.5333 1.2063 38 1 9.9054 1.0771 2.2199 39 1 9.0106 3.1191 3.3091 40 1 3.2775 3.2508 3.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:52 Heat of formation + Delta-G solvation = -50.753773 kcal Electronic energy + Delta-G solvation = -23769.077850 eV Core-core repulsion = 20355.606608 eV Total energy + Delta-G solvation = -3413.471242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.61356 -40.26412 -38.71172 -35.96832 -35.03774 -34.34750 -33.08924 -32.23246 -31.01005 -28.10872 -27.74203 -27.15818 -23.88631 -23.13084 -22.23505 -21.82076 -20.83724 -19.64137 -18.32571 -18.07817 -17.17530 -16.80238 -16.39776 -16.26971 -15.64840 -15.59271 -15.26931 -15.07140 -14.66345 -14.19094 -14.06096 -13.77589 -13.67239 -13.39028 -12.99984 -12.98129 -12.87551 -12.75598 -12.59650 -12.38928 -12.33711 -12.12520 -11.81244 -11.76401 -11.60885 -11.48262 -11.19451 -10.87363 -10.24764 -9.91417 -9.04965 -8.83314 -8.06473 -6.44050 0.90494 1.24307 1.36297 1.48651 1.50734 2.06173 2.22597 2.24001 2.87518 2.98943 3.48586 3.67911 3.73677 3.99344 4.04519 4.16101 4.30546 4.37658 4.39993 4.54548 4.60389 4.71660 4.75232 4.81417 4.91216 4.94869 4.95362 5.04466 5.06570 5.10595 5.21999 5.24490 5.25950 5.39321 5.67062 5.83214 5.87669 5.91902 6.13133 6.36609 6.72401 6.83838 7.06197 7.68292 8.33878 8.54549 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014694 B = 0.006226 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.096371 B = 4496.457677 C = 6202.437867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.057 3.943 3 H 0.035 0.965 4 C -0.133 4.133 5 C -0.113 4.113 6 H 0.074 0.926 7 C -0.136 4.136 8 C 0.074 3.926 9 H 0.135 0.865 10 C 0.438 3.562 11 O -0.452 6.452 12 N -0.651 5.651 13 C 0.347 3.653 14 C -0.344 4.344 15 C -0.034 4.034 16 C -0.330 4.330 17 C 0.236 3.764 18 C -0.467 4.467 19 H 0.086 0.914 20 C 0.010 3.990 21 N -0.691 5.691 22 Si 0.974 3.026 23 H -0.258 1.258 24 H -0.276 1.276 25 H -0.259 1.259 26 N -0.511 5.511 27 O -0.369 6.369 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.420 0.580 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.104 0.896 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.933 -11.460 -10.452 16.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.000 4.000 3 H 0.053 0.947 4 C -0.170 4.170 5 C -0.132 4.132 6 H 0.092 0.908 7 C -0.193 4.193 8 C 0.012 3.988 9 H 0.152 0.848 10 C 0.222 3.778 11 O -0.317 6.317 12 N -0.302 5.302 13 C 0.108 3.892 14 C -0.369 4.369 15 C -0.058 4.058 16 C -0.353 4.353 17 C 0.111 3.889 18 C -0.498 4.498 19 H 0.104 0.896 20 C -0.215 4.215 21 N -0.310 5.310 22 Si 0.795 3.205 23 H -0.182 1.182 24 H -0.201 1.201 25 H -0.184 1.184 26 N -0.230 5.230 27 O -0.287 6.287 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.257 0.743 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.122 0.878 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.606 -10.681 -9.866 15.970 hybrid contribution 1.113 0.602 0.328 1.307 sum -5.493 -10.079 -9.538 14.924 Atomic orbital electron populations 1.21720 0.91167 1.03513 1.02890 1.23315 0.96669 0.94550 0.85433 0.94687 1.23268 0.95040 1.01310 0.97416 1.22519 0.98823 1.01046 0.90812 0.90786 1.21829 1.02821 0.91896 1.02715 1.22916 0.82383 0.96087 0.97445 0.84779 1.22435 0.83745 0.89805 0.81842 1.91146 1.76942 1.27147 1.36463 1.43401 1.05241 1.27224 1.54369 1.19208 0.87637 0.89942 0.92396 1.20991 0.91257 1.05834 1.18852 1.21045 0.99159 0.92293 0.93332 1.21804 0.95769 1.02771 1.14930 1.18887 0.88684 0.91902 0.89474 1.19883 0.93042 1.04652 1.32244 0.89564 1.27062 0.97670 1.00673 0.96127 1.70527 1.03676 1.30602 1.26238 0.85398 0.77275 0.78322 0.79526 1.18192 1.20072 1.18371 1.68673 1.36558 1.02469 1.15323 1.88919 1.25096 1.73119 1.41576 0.90430 0.93483 0.88911 0.89089 0.87614 0.91110 0.90295 0.91040 0.74277 0.84820 0.84405 0.87766 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.66 71.98 0.70 -2.38 16 2 C 0.06 1.69 3.87 31.27 0.12 1.81 16 3 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.13 -2.73 6.14 31.89 0.20 -2.53 16 5 C -0.11 -2.49 3.25 -9.80 -0.03 -2.52 16 6 H 0.07 1.84 7.68 -2.38 -0.02 1.83 16 7 C -0.14 -1.85 8.93 71.98 0.64 -1.21 16 8 C 0.07 2.24 3.56 30.22 0.11 2.35 16 9 H 0.13 3.36 7.69 -2.39 -0.02 3.34 16 10 C 0.44 18.66 6.84 87.66 0.60 19.26 16 11 O -0.45 -24.92 12.26 15.70 0.19 -24.73 16 12 N -0.65 -25.70 5.34 -308.36 -1.65 -27.34 16 13 C 0.35 17.23 7.43 133.25 0.99 18.22 16 14 C -0.34 -14.87 9.96 22.72 0.23 -14.64 16 15 C -0.03 -1.51 10.15 22.39 0.23 -1.28 16 16 C -0.33 -17.05 9.83 22.86 0.22 -16.82 16 17 C 0.24 14.04 6.55 40.20 0.26 14.31 16 18 C -0.47 -27.45 9.14 23.47 0.21 -27.24 16 19 H 0.09 4.72 7.85 -2.91 -0.02 4.70 16 20 C 0.01 0.56 5.50 85.29 0.47 1.03 16 21 N -0.69 -41.67 8.99 21.84 0.20 -41.48 16 22 Si 0.97 42.26 29.56 68.60 2.03 44.29 16 23 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 24 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 26 N -0.51 -30.32 5.74 -186.35 -1.07 -31.39 16 27 O -0.37 -13.00 10.46 -130.26 -1.36 -14.36 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.11 1.63 7.76 -2.39 -0.02 1.61 16 33 H 0.07 0.87 8.11 -2.39 -0.02 0.85 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.42 11.93 8.70 -92.71 -0.81 11.13 16 37 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.14 4.84 8.06 -2.91 -0.02 4.81 16 39 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 40 H 0.27 15.45 8.29 -92.71 -0.77 14.68 16 Total: -1.00 -79.88 331.72 3.52 -76.35 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.24 Total: 30.31 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 4.95 Total: -11.65 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -2.52 Total: -100.21 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.17 Total: -39.09 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -79.88 3.52 -76.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.600 kcal (2) G-P(sol) polarization free energy of solvation -79.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds