Wall clock time and date at job start Tue Mar 31 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.54546 * 2 1 4 4 C 1.54997 * 110.61597 * 237.12770 * 2 1 3 5 5 C 1.54813 * 102.08797 * 204.47617 * 4 2 1 6 6 H 1.08996 * 110.48726 * 139.55851 * 5 4 2 7 7 C 1.53010 * 110.48441 * 262.20079 * 5 4 2 8 8 C 1.54101 * 104.19180 * 20.87793 * 5 4 2 9 9 H 1.09002 * 109.87716 * 242.46286 * 8 5 4 10 10 C 1.50691 * 109.87695 * 121.45337 * 8 5 4 11 11 O 1.21267 * 120.00439 * 244.99644 * 10 8 5 12 12 N 1.34779 * 119.99775 * 65.00606 * 10 8 5 13 13 C 1.39275 * 119.99970 * 185.14889 * 12 10 8 14 14 C 1.39667 * 119.57507 * 174.67095 * 13 12 10 15 15 C 1.38654 * 119.49418 * 180.22723 * 14 13 12 16 16 C 1.38350 * 118.67080 * 359.51182 * 15 14 13 17 17 C 1.40574 * 119.12655 * 0.48365 * 16 15 14 18 18 C 1.41341 * 119.78828 * 179.72805 * 17 16 15 19 19 H 1.08002 * 119.99606 * 0.02562 * 18 17 16 20 20 C 1.40027 * 120.00260 * 180.02562 * 18 17 16 21 21 N 1.30742 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99916 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47307 * 89.99985 * 22 20 18 24 24 H 1.48503 * 109.46873 * 209.99421 * 22 20 18 25 25 H 1.48494 * 109.47332 * 329.99297 * 22 20 18 26 26 N 1.31902 * 119.57415 * 354.65044 * 13 12 10 27 27 O 1.43750 * 107.29093 * 2.02947 * 8 5 4 28 28 H 1.09009 * 109.47125 * 182.87516 * 1 2 3 29 29 H 1.09002 * 109.47424 * 302.87422 * 1 2 3 30 30 H 1.08998 * 109.47365 * 62.87585 * 1 2 3 31 31 H 1.08997 * 110.91154 * 86.27614 * 4 2 1 32 32 H 1.09004 * 110.90678 * 322.66778 * 4 2 1 33 33 H 1.08998 * 109.46535 * 174.76486 * 7 5 4 34 34 H 1.08999 * 109.46979 * 294.76873 * 7 5 4 35 35 H 1.09000 * 109.46864 * 54.77204 * 7 5 4 36 36 H 0.96994 * 120.00584 * 5.15069 * 12 10 8 37 37 H 1.08001 * 120.25615 * 359.95696 * 14 13 12 38 38 H 1.07999 * 120.66448 * 179.74845 * 15 14 13 39 39 H 1.07995 * 120.43426 * 180.24197 * 16 15 14 40 40 H 0.96999 * 120.00221 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0757 -0.7874 -1.2184 5 6 3.4794 -1.2156 -0.7254 6 1 3.6974 -2.2375 -1.0356 7 6 4.5479 -0.2552 -1.2521 8 6 3.3839 -1.1267 0.8101 9 1 4.0872 -0.3819 1.1826 10 6 3.6888 -2.4700 1.4210 11 8 2.8272 -3.0698 2.0280 12 7 4.9193 -3.0049 1.2929 13 6 5.1718 -4.2912 1.7633 14 6 6.4163 -4.8796 1.5272 15 6 6.6643 -6.1621 1.9921 16 6 5.6668 -6.8197 2.6896 17 6 4.4354 -6.1736 2.8949 18 6 3.4045 -6.8347 3.6006 19 1 3.5645 -7.8330 3.9805 20 6 2.1759 -6.1954 3.8073 21 7 1.9825 -4.9868 3.3478 22 14 0.8139 -7.0690 4.7405 23 1 0.9332 -6.7657 6.1894 24 1 -0.5051 -6.6011 4.2440 25 1 0.9307 -8.5343 4.5302 26 7 4.2328 -4.9379 2.4265 27 8 2.0384 -0.7370 1.1326 28 1 -0.3634 -1.0265 0.0516 29 1 -0.3634 0.5578 0.8631 30 1 -0.3634 0.4685 -0.9146 31 1 2.1508 -0.1443 -2.0953 32 1 1.4549 -1.6584 -1.4285 33 1 5.5146 -0.5158 -0.8213 34 1 4.6014 -0.3315 -2.3381 35 1 4.2886 0.7657 -0.9718 36 1 5.6290 -2.4940 0.8732 37 1 7.1782 -4.3415 0.9827 38 1 7.6184 -6.6367 1.8166 39 1 5.8306 -7.8179 3.0680 40 1 1.1316 -4.5438 3.4913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:54 Heat of formation + Delta-G solvation = -27.883263 kcal Electronic energy + Delta-G solvation = -23670.357891 eV Core-core repulsion = 20257.878389 eV Total energy + Delta-G solvation = -3412.479502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.18906 -38.66264 -37.07969 -34.16868 -33.54224 -32.83967 -31.98304 -30.28025 -29.15806 -26.90933 -26.64182 -25.35043 -22.16654 -21.46134 -21.10045 -20.66902 -19.32423 -17.80867 -16.54481 -16.22592 -16.09996 -15.34306 -14.61319 -14.54035 -14.40407 -13.95464 -13.79119 -13.57426 -13.26142 -12.93339 -12.84817 -12.53601 -12.36992 -12.00186 -11.95564 -11.85410 -11.31795 -11.21592 -11.09235 -10.91729 -10.67299 -10.63953 -10.61029 -10.43698 -9.90247 -9.74186 -9.61629 -8.98067 -8.72955 -7.93726 -7.15838 -6.93601 -6.09264 -4.36504 2.80912 3.10160 3.20926 3.23250 3.29832 3.45430 3.71908 4.10345 4.21606 4.47229 4.73675 4.83150 4.94543 5.02360 5.12117 5.27068 5.35663 5.41101 5.51302 5.60589 5.72359 5.74162 5.86725 5.91539 6.04073 6.07578 6.13636 6.18824 6.19813 6.50984 6.69384 6.84524 6.87616 7.02395 7.27956 7.58724 7.66221 7.83846 8.09473 8.23876 8.49454 8.78492 9.08362 9.31919 10.28236 10.52926 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.005975 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.162113 B = 4684.945043 C = 6342.140716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.067 0.933 4 C -0.144 4.144 5 C -0.120 4.120 6 H 0.090 0.910 7 C -0.143 4.143 8 C 0.067 3.933 9 H 0.083 0.917 10 C 0.467 3.533 11 O -0.386 6.386 12 N -0.665 5.665 13 C 0.373 3.627 14 C -0.358 4.358 15 C -0.036 4.036 16 C -0.306 4.306 17 C 0.270 3.730 18 C -0.425 4.425 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.653 5.653 22 Si 0.895 3.105 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.264 1.264 26 N -0.474 5.474 27 O -0.340 6.340 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.397 0.603 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 11.437 -9.148 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.182 4.182 5 C -0.139 4.139 6 H 0.108 0.892 7 C -0.200 4.200 8 C 0.005 3.995 9 H 0.101 0.899 10 C 0.247 3.753 11 O -0.247 6.247 12 N -0.314 5.314 13 C 0.135 3.865 14 C -0.384 4.384 15 C -0.060 4.060 16 C -0.329 4.329 17 C 0.145 3.855 18 C -0.455 4.455 19 H 0.100 0.900 20 C -0.173 4.173 21 N -0.272 5.272 22 Si 0.720 3.280 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.188 1.188 26 N -0.193 5.193 27 O -0.258 6.258 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.230 0.770 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.133 11.547 -8.351 14.296 hybrid contribution 0.893 -0.391 -0.201 0.995 sum -0.240 11.157 -8.553 14.060 Atomic orbital electron populations 1.21756 0.93180 1.03410 1.01945 1.23122 0.95347 0.94937 0.85352 0.91501 1.23246 0.95716 1.00900 0.98345 1.22491 0.96143 1.01599 0.93690 0.89151 1.21864 0.98122 0.98757 1.01274 1.22734 0.86645 0.95833 0.94319 0.89897 1.20506 0.83862 0.87316 0.83640 1.91159 1.43484 1.57803 1.32219 1.43329 1.12017 1.15139 1.60889 1.18600 0.90532 0.84794 0.92606 1.20467 0.98124 0.99562 1.20225 1.20552 0.96800 0.93537 0.95148 1.21613 0.97025 1.01572 1.12692 1.18387 0.90502 0.87302 0.89266 1.19589 0.95897 1.01074 1.28948 0.89964 1.26186 0.99646 0.95206 0.96245 1.70292 1.22465 1.08542 1.25866 0.86523 0.80567 0.80629 0.80291 1.19653 1.20300 1.18787 1.68704 1.27902 1.08830 1.13910 1.89041 1.26271 1.72756 1.37740 0.91378 0.91915 0.91401 0.90185 0.90178 0.92014 0.91973 0.92385 0.76989 0.89141 0.88668 0.88604 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.65 37.16 0.36 -1.29 16 2 C 0.07 0.88 3.98 -25.68 -0.10 0.78 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.14 -1.66 6.15 -24.72 -0.15 -1.81 16 5 C -0.12 -1.49 3.25 -89.08 -0.29 -1.78 16 6 H 0.09 1.27 7.69 -51.93 -0.40 0.87 16 7 C -0.14 -1.28 8.91 37.16 0.33 -0.94 16 8 C 0.07 1.06 3.52 -27.31 -0.10 0.96 16 9 H 0.08 1.13 7.69 -51.93 -0.40 0.73 16 10 C 0.47 9.90 6.91 -10.99 -0.08 9.82 16 11 O -0.39 -10.32 12.30 -14.01 -0.17 -10.49 16 12 N -0.66 -13.35 5.36 -11.40 -0.06 -13.41 16 13 C 0.37 9.27 7.43 -154.98 -1.15 8.12 16 14 C -0.36 -8.12 9.95 -38.89 -0.39 -8.51 16 15 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 16 C -0.31 -7.83 9.83 -38.66 -0.38 -8.21 16 17 C 0.27 7.75 6.55 -85.00 -0.56 7.20 16 18 C -0.42 -11.93 9.14 -37.73 -0.34 -12.28 16 19 H 0.08 2.16 7.85 -52.49 -0.41 1.74 16 20 C 0.06 1.53 5.50 -17.35 -0.10 1.44 16 21 N -0.65 -18.75 8.99 55.55 0.50 -18.25 16 22 Si 0.90 19.79 29.56 -169.99 -5.02 14.76 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 26 N -0.47 -13.63 5.74 -10.25 -0.06 -13.69 16 27 O -0.34 -5.98 10.44 -54.81 -0.57 -6.55 16 28 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 32 H 0.08 1.01 8.06 -51.93 -0.42 0.60 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.40 6.09 8.70 -40.82 -0.36 5.74 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 40 H 0.27 7.47 8.29 -40.82 -0.34 7.13 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -34.28 331.92 -9.48 -43.76 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.75 Total: 6.60 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.34 Total: -7.74 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.38 Total: -45.36 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.74 Total: -17.04 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.28 -9.48 -43.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.880 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds