Wall clock time and date at job start Tue Mar 31 2020 06:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.54546 * 2 1 4 4 C 1.54997 * 110.61597 * 237.12770 * 2 1 3 5 5 C 1.54813 * 102.08797 * 204.47617 * 4 2 1 6 6 H 1.08996 * 110.48726 * 139.55851 * 5 4 2 7 7 C 1.53010 * 110.48441 * 262.20079 * 5 4 2 8 8 C 1.54101 * 104.19180 * 20.87793 * 5 4 2 9 9 H 1.09002 * 109.87716 * 242.46286 * 8 5 4 10 10 C 1.50691 * 109.87695 * 121.45337 * 8 5 4 11 11 O 1.21267 * 120.00439 * 244.99644 * 10 8 5 12 12 N 1.34779 * 119.99775 * 65.00606 * 10 8 5 13 13 C 1.39275 * 119.99970 * 185.14889 * 12 10 8 14 14 C 1.39667 * 119.57507 * 174.67095 * 13 12 10 15 15 C 1.38654 * 119.49418 * 180.22723 * 14 13 12 16 16 C 1.38350 * 118.67080 * 359.51182 * 15 14 13 17 17 C 1.40574 * 119.12655 * 0.48365 * 16 15 14 18 18 C 1.41341 * 119.78828 * 179.72805 * 17 16 15 19 19 H 1.08002 * 119.99606 * 0.02562 * 18 17 16 20 20 C 1.40027 * 120.00260 * 180.02562 * 18 17 16 21 21 N 1.30742 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99916 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47307 * 89.99985 * 22 20 18 24 24 H 1.48503 * 109.46873 * 209.99421 * 22 20 18 25 25 H 1.48494 * 109.47332 * 329.99297 * 22 20 18 26 26 N 1.31902 * 119.57415 * 354.65044 * 13 12 10 27 27 O 1.43750 * 107.29093 * 2.02947 * 8 5 4 28 28 H 1.09009 * 109.47125 * 182.87516 * 1 2 3 29 29 H 1.09002 * 109.47424 * 302.87422 * 1 2 3 30 30 H 1.08998 * 109.47365 * 62.87585 * 1 2 3 31 31 H 1.08997 * 110.91154 * 86.27614 * 4 2 1 32 32 H 1.09004 * 110.90678 * 322.66778 * 4 2 1 33 33 H 1.08998 * 109.46535 * 174.76486 * 7 5 4 34 34 H 1.08999 * 109.46979 * 294.76873 * 7 5 4 35 35 H 1.09000 * 109.46864 * 54.77204 * 7 5 4 36 36 H 0.96994 * 120.00584 * 5.15069 * 12 10 8 37 37 H 1.08001 * 120.25615 * 359.95696 * 14 13 12 38 38 H 1.07999 * 120.66448 * 179.74845 * 15 14 13 39 39 H 1.07995 * 120.43426 * 180.24197 * 16 15 14 40 40 H 0.96999 * 120.00221 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0757 -0.7874 -1.2184 5 6 3.4794 -1.2156 -0.7254 6 1 3.6974 -2.2375 -1.0356 7 6 4.5479 -0.2552 -1.2521 8 6 3.3839 -1.1267 0.8101 9 1 4.0872 -0.3819 1.1826 10 6 3.6888 -2.4700 1.4210 11 8 2.8272 -3.0698 2.0280 12 7 4.9193 -3.0049 1.2929 13 6 5.1718 -4.2912 1.7633 14 6 6.4163 -4.8796 1.5272 15 6 6.6643 -6.1621 1.9921 16 6 5.6668 -6.8197 2.6896 17 6 4.4354 -6.1736 2.8949 18 6 3.4045 -6.8347 3.6006 19 1 3.5645 -7.8330 3.9805 20 6 2.1759 -6.1954 3.8073 21 7 1.9825 -4.9868 3.3478 22 14 0.8139 -7.0690 4.7405 23 1 0.9332 -6.7657 6.1894 24 1 -0.5051 -6.6011 4.2440 25 1 0.9307 -8.5343 4.5302 26 7 4.2328 -4.9379 2.4265 27 8 2.0384 -0.7370 1.1326 28 1 -0.3634 -1.0265 0.0516 29 1 -0.3634 0.5578 0.8631 30 1 -0.3634 0.4685 -0.9146 31 1 2.1508 -0.1443 -2.0953 32 1 1.4549 -1.6584 -1.4285 33 1 5.5146 -0.5158 -0.8213 34 1 4.6014 -0.3315 -2.3381 35 1 4.2886 0.7657 -0.9718 36 1 5.6290 -2.4940 0.8732 37 1 7.1782 -4.3415 0.9827 38 1 7.6184 -6.6367 1.8166 39 1 5.8306 -7.8179 3.0680 40 1 1.1316 -4.5438 3.4913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:54 Heat of formation + Delta-G solvation = -49.649192 kcal Electronic energy + Delta-G solvation = -23671.301733 eV Core-core repulsion = 20257.878389 eV Total energy + Delta-G solvation = -3413.423344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53281 -40.30188 -38.82609 -35.96685 -35.01824 -34.36264 -33.04895 -32.22774 -31.00493 -28.13198 -27.66503 -27.17944 -23.87995 -23.11722 -22.40498 -21.75890 -20.95627 -19.65103 -18.17414 -17.87812 -17.17669 -16.76651 -16.34074 -16.23813 -15.88652 -15.61063 -15.27506 -14.79911 -14.70763 -14.54438 -14.09409 -13.77202 -13.65250 -13.40414 -13.20171 -12.91616 -12.88758 -12.73880 -12.57521 -12.34564 -12.28271 -12.24282 -11.78402 -11.66046 -11.56046 -11.47494 -10.91685 -10.87673 -10.37341 -9.91352 -9.06975 -8.83707 -8.05853 -6.43639 0.90480 1.24449 1.36776 1.49314 1.51901 2.05202 2.08200 2.24490 2.96595 3.02960 3.45173 3.66359 3.84747 3.92444 4.05475 4.17853 4.22694 4.38747 4.41202 4.43675 4.65756 4.71966 4.77893 4.84776 4.86513 4.91416 4.95515 5.02152 5.06357 5.14561 5.17550 5.25971 5.26209 5.39390 5.67238 5.83164 5.91235 5.95647 6.14090 6.37068 6.72405 6.84366 7.06321 7.68307 8.34252 8.55321 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.005975 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.162113 B = 4684.945043 C = 6342.140716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 H 0.098 0.902 4 C -0.140 4.140 5 C -0.114 4.114 6 H 0.067 0.933 7 C -0.137 4.137 8 C 0.076 3.924 9 H 0.112 0.888 10 C 0.456 3.544 11 O -0.450 6.450 12 N -0.650 5.650 13 C 0.348 3.652 14 C -0.343 4.343 15 C -0.034 4.034 16 C -0.329 4.329 17 C 0.236 3.764 18 C -0.467 4.467 19 H 0.087 0.913 20 C 0.009 3.991 21 N -0.692 5.692 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.253 1.253 26 N -0.512 5.512 27 O -0.384 6.384 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.420 0.580 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 13.161 -10.907 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.006 3.994 3 H 0.115 0.885 4 C -0.177 4.177 5 C -0.133 4.133 6 H 0.086 0.914 7 C -0.194 4.194 8 C 0.014 3.986 9 H 0.130 0.870 10 C 0.239 3.761 11 O -0.315 6.315 12 N -0.301 5.301 13 C 0.109 3.891 14 C -0.368 4.368 15 C -0.058 4.058 16 C -0.352 4.352 17 C 0.110 3.890 18 C -0.498 4.498 19 H 0.105 0.895 20 C -0.216 4.216 21 N -0.312 5.312 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.176 1.176 26 N -0.231 5.231 27 O -0.303 6.303 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.258 0.742 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.123 0.877 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.460 13.307 -10.153 16.744 hybrid contribution 0.582 -0.863 0.242 1.069 sum 1.043 12.444 -9.911 15.942 Atomic orbital electron populations 1.21802 0.92822 1.01980 1.03619 1.23478 0.95830 0.95916 0.84201 0.88471 1.23259 0.94560 1.00618 0.99300 1.22483 0.98143 1.01658 0.91010 0.91417 1.21861 0.96891 0.98350 1.02260 1.22775 0.86824 0.92698 0.96294 0.87014 1.21653 0.83192 0.88874 0.82426 1.91150 1.45243 1.60052 1.35025 1.43275 1.12845 1.13815 1.60136 1.19170 0.91047 0.86414 0.92467 1.20979 0.97934 0.99465 1.18401 1.21051 0.97768 0.93567 0.93419 1.21806 0.97023 1.02343 1.14008 1.18894 0.92026 0.88065 0.89995 1.19915 0.97171 1.01788 1.30892 0.89498 1.27080 1.01900 0.95819 0.96815 1.70532 1.22616 1.10239 1.27764 0.85331 0.76817 0.79634 0.78678 1.18964 1.20072 1.17602 1.68664 1.29977 1.09350 1.15139 1.89015 1.27235 1.73690 1.40400 0.94152 0.92099 0.88028 0.86368 0.92439 0.91166 0.90235 0.90722 0.74224 0.84737 0.84327 0.87715 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.65 71.98 0.69 -2.49 16 2 C 0.06 1.47 3.98 31.28 0.12 1.59 16 3 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.14 -2.94 6.15 31.90 0.20 -2.74 16 5 C -0.11 -2.61 3.25 -9.80 -0.03 -2.64 16 6 H 0.07 1.86 7.69 -2.39 -0.02 1.84 16 7 C -0.14 -1.86 8.91 71.99 0.64 -1.22 16 8 C 0.08 2.34 3.52 30.22 0.11 2.44 16 9 H 0.11 2.78 7.69 -2.39 -0.02 2.76 16 10 C 0.46 19.82 6.91 87.65 0.61 20.43 16 11 O -0.45 -25.51 12.30 15.73 0.19 -25.32 16 12 N -0.65 -25.91 5.36 -308.38 -1.65 -27.57 16 13 C 0.35 17.35 7.43 133.25 0.99 18.34 16 14 C -0.34 -14.79 9.95 22.71 0.23 -14.56 16 15 C -0.03 -1.49 10.15 22.40 0.23 -1.27 16 16 C -0.33 -17.00 9.83 22.87 0.22 -16.78 16 17 C 0.24 14.08 6.55 40.19 0.26 14.34 16 18 C -0.47 -27.56 9.14 23.47 0.21 -27.35 16 19 H 0.09 4.78 7.85 -2.91 -0.02 4.76 16 20 C 0.01 0.51 5.50 85.29 0.47 0.98 16 21 N -0.69 -42.33 8.99 21.84 0.20 -42.13 16 22 Si 0.97 42.66 29.56 68.60 2.03 44.69 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 26 N -0.51 -30.61 5.74 -186.36 -1.07 -31.68 16 27 O -0.38 -13.63 10.44 -130.26 -1.36 -14.99 16 28 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.12 1.57 7.86 -2.39 -0.02 1.55 16 32 H 0.06 1.45 8.06 -2.38 -0.02 1.43 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.42 12.04 8.70 -92.71 -0.81 11.24 16 37 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 40 H 0.27 15.70 8.29 -92.71 -0.77 14.93 16 Total: -1.00 -81.82 331.92 3.53 -78.30 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.24 Total: 29.60 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 4.95 Total: -10.90 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -2.52 Total: -101.37 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -1.17 Total: -40.31 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -81.82 3.53 -78.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.646 kcal (2) G-P(sol) polarization free energy of solvation -81.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds