Wall clock time and date at job start Tue Mar 31 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.57403 * 2 1 4 4 C 1.53102 * 109.59821 * 120.12323 * 2 1 3 5 5 O 1.42900 * 109.48375 * 177.42173 * 4 2 1 6 6 C 1.42896 * 114.09994 * 298.88431 * 5 4 2 7 7 C 1.53090 * 109.41451 * 61.16072 * 6 5 4 8 8 C 1.53175 * 109.16501 * 302.39196 * 7 6 5 9 9 H 1.08995 * 109.54201 * 297.02578 * 8 7 6 10 10 C 1.50697 * 109.54486 * 176.84382 * 8 7 6 11 11 O 1.21273 * 120.00064 * 240.17809 * 10 8 7 12 12 N 1.34781 * 120.00171 * 60.17642 * 10 8 7 13 13 C 1.39263 * 120.00452 * 185.50837 * 12 10 8 14 14 C 1.39670 * 119.57699 * 175.01898 * 13 12 10 15 15 C 1.38654 * 119.49954 * 180.02562 * 14 13 12 16 16 C 1.38353 * 118.66483 * 359.97438 * 15 14 13 17 17 C 1.40578 * 119.13235 * 0.02562 * 16 15 14 18 18 C 1.41335 * 119.78478 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00450 * 5.98907 * 18 17 16 20 20 C 1.40034 * 119.99597 * 185.98411 * 18 17 16 21 21 N 1.30743 * 119.99825 * 5.80449 * 20 18 17 22 22 Si 1.86799 * 119.99644 * 185.80998 * 20 18 17 23 23 H 1.48497 * 109.47364 * 85.00189 * 22 20 18 24 24 H 1.48497 * 109.47197 * 324.99108 * 22 20 18 25 25 H 1.48510 * 109.46611 * 204.99954 * 22 20 18 26 26 N 1.31905 * 119.57481 * 355.29692 * 13 12 10 27 27 H 1.09002 * 109.47193 * 180.15341 * 1 2 3 28 28 H 1.08997 * 109.47239 * 300.15866 * 1 2 3 29 29 H 1.09008 * 109.47042 * 60.15480 * 1 2 3 30 30 H 1.09000 * 109.40469 * 57.43609 * 4 2 1 31 31 H 1.09000 * 109.49039 * 297.45848 * 4 2 1 32 32 H 1.08998 * 109.48240 * 301.17721 * 6 5 4 33 33 H 1.09000 * 109.49405 * 181.14907 * 6 5 4 34 34 H 1.08996 * 109.52320 * 182.48273 * 7 6 5 35 35 H 1.09008 * 109.57358 * 62.32870 * 7 6 5 36 36 H 0.97001 * 119.99569 * 5.51267 * 12 10 8 37 37 H 1.07996 * 120.25117 * 0.02562 * 14 13 12 38 38 H 1.07996 * 120.66933 * 180.02562 * 15 14 13 39 39 H 1.08003 * 120.43335 * 179.97438 * 16 15 14 40 40 H 0.97003 * 119.99241 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7238 1.2475 5 8 3.4713 -0.7751 1.2151 6 6 4.0044 -1.4835 0.0944 7 6 3.5715 -0.7890 -1.1994 8 6 2.0419 -0.7252 -1.2484 9 1 1.6355 -1.7362 -1.2751 10 6 1.6078 0.0253 -2.4810 11 8 0.9506 1.0389 -2.3737 12 7 1.9500 -0.4298 -3.7026 13 6 1.6488 0.3222 -4.8354 14 6 2.0987 -0.1057 -6.0865 15 6 1.7983 0.6445 -7.2133 16 6 1.0562 1.8022 -7.0614 17 6 0.6325 2.1796 -5.7752 18 6 -0.1259 3.3599 -5.6041 19 1 -0.4606 3.9166 -6.4668 20 6 -0.4434 3.8075 -4.3157 21 7 0.0554 3.1996 -3.2712 22 14 -1.5797 5.2728 -4.0897 23 1 -2.9917 4.8143 -4.1241 24 1 -1.3498 6.2508 -5.1832 25 1 -1.3006 5.9183 -2.7816 26 7 0.9471 1.4323 -4.7123 27 1 -0.3634 -1.0277 0.0028 28 1 -0.3633 0.5163 0.8885 29 1 -0.3633 0.5115 -0.8914 30 1 1.6437 -1.7377 1.2683 31 1 1.7192 -0.1869 2.1389 32 1 3.6303 -2.5073 0.1001 33 1 5.0927 -1.4938 0.1548 34 1 3.9402 -1.3527 -2.0563 35 1 3.9793 0.2216 -1.2255 36 1 2.4060 -1.2811 -3.7927 37 1 2.6760 -1.0140 -6.1757 38 1 2.1362 0.3310 -8.1899 39 1 0.8063 2.4084 -7.9196 40 1 -0.1643 3.5099 -2.3787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882472248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:10 Heat of formation + Delta-G solvation = -35.796096 kcal Electronic energy + Delta-G solvation = -23827.260625 eV Core-core repulsion = 20414.437997 eV Total energy + Delta-G solvation = -3412.822628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15003 -38.67985 -37.35264 -34.39878 -33.80689 -33.09563 -32.02007 -30.31314 -29.08402 -26.88196 -25.80324 -25.27524 -22.24386 -22.18993 -21.27485 -20.19501 -19.13969 -17.77963 -16.59212 -16.19795 -15.99840 -15.45585 -14.84838 -14.72715 -14.46803 -14.39394 -13.90445 -13.77512 -13.47587 -13.03408 -12.71504 -12.48013 -12.03903 -11.92063 -11.88406 -11.65426 -11.29339 -11.12293 -10.96862 -10.82881 -10.66302 -10.50391 -10.46867 -10.27156 -9.96042 -9.68650 -9.58069 -9.00414 -8.74721 -7.98033 -7.19926 -6.96035 -6.18763 -4.39207 2.77058 3.06706 3.16978 3.18940 3.26541 3.69009 3.80758 3.90951 4.06103 4.70416 4.82246 4.89283 4.96112 4.98360 5.20318 5.36693 5.43600 5.60924 5.62249 5.64715 5.75778 5.86832 5.95933 6.03292 6.11625 6.16577 6.23250 6.48397 6.53221 6.66782 6.77086 6.84080 6.85141 7.16510 7.24651 7.55354 7.62603 7.80863 8.07142 8.19922 8.47209 8.74853 9.04334 9.27795 10.23623 10.46894 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.005842 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.061746 B = 4791.673872 C = 6253.697118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.102 4.102 3 H 0.088 0.912 4 C 0.066 3.934 5 O -0.385 6.385 6 C 0.064 3.936 7 C -0.147 4.147 8 C -0.104 4.104 9 H 0.086 0.914 10 C 0.477 3.523 11 O -0.404 6.404 12 N -0.667 5.667 13 C 0.372 3.628 14 C -0.358 4.358 15 C -0.036 4.036 16 C -0.306 4.306 17 C 0.273 3.727 18 C -0.427 4.427 19 H 0.082 0.918 20 C 0.061 3.939 21 N -0.658 5.658 22 Si 0.896 3.104 23 H -0.270 1.270 24 H -0.264 1.264 25 H -0.279 1.279 26 N -0.475 5.475 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.397 0.603 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.247 -9.006 7.658 12.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.011 4.011 5 O -0.303 6.303 6 C -0.013 4.013 7 C -0.185 4.185 8 C -0.126 4.126 9 H 0.104 0.896 10 C 0.258 3.742 11 O -0.267 6.267 12 N -0.314 5.314 13 C 0.133 3.867 14 C -0.384 4.384 15 C -0.060 4.060 16 C -0.329 4.329 17 C 0.148 3.852 18 C -0.458 4.458 19 H 0.100 0.900 20 C -0.168 4.168 21 N -0.277 5.277 22 Si 0.720 3.280 23 H -0.196 1.196 24 H -0.189 1.189 25 H -0.204 1.204 26 N -0.194 5.194 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.587 -7.828 9.039 12.484 hybrid contribution -0.053 -0.387 -1.146 1.211 sum 3.534 -8.215 7.892 11.927 Atomic orbital electron populations 1.21910 0.93848 1.01186 1.04039 1.21520 0.97092 1.00827 0.92679 0.89400 1.22718 0.80578 0.99454 0.98301 1.87913 1.20712 1.76414 1.45301 1.22558 0.98988 0.94303 0.85450 1.22179 0.94661 1.02995 0.98628 1.21460 0.96216 1.00286 0.94656 0.89580 1.20570 0.82662 0.87188 0.83746 1.91072 1.30861 1.20247 1.84517 1.43456 1.59816 1.22845 1.05254 1.18618 0.93197 0.90919 0.83934 1.20494 1.19051 1.06114 0.92710 1.20561 0.95453 0.94038 0.95985 1.21627 1.11596 1.01377 0.98315 1.18372 0.89386 0.91578 0.85885 1.19554 1.27722 1.05472 0.93018 0.90007 1.26129 0.96574 0.97828 0.96306 1.70247 1.28502 1.30416 0.98510 0.86537 0.81113 0.81918 0.78407 1.19573 1.18854 1.20371 1.68644 1.16279 1.03572 1.30860 0.93789 0.93082 0.89076 0.93429 0.88849 0.93258 0.88870 0.90558 0.90350 0.76998 0.89187 0.88686 0.88609 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.93 37.16 0.33 -1.90 16 2 C -0.10 -1.45 2.05 -90.47 -0.19 -1.64 16 3 H 0.09 1.48 8.03 -51.93 -0.42 1.06 16 4 C 0.07 0.78 6.13 37.21 0.23 1.01 16 5 O -0.38 -4.99 10.77 -35.23 -0.38 -5.37 16 6 C 0.06 0.68 6.84 37.20 0.25 0.93 16 7 C -0.15 -1.79 5.31 -26.59 -0.14 -1.93 16 8 C -0.10 -1.47 2.11 -91.59 -0.19 -1.67 16 9 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 10 C 0.48 9.25 6.83 -10.99 -0.08 9.17 16 11 O -0.40 -9.63 9.75 5.56 0.05 -9.58 16 12 N -0.67 -12.87 5.27 -11.40 -0.06 -12.93 16 13 C 0.37 9.00 7.43 -154.98 -1.15 7.85 16 14 C -0.36 -8.03 9.95 -38.89 -0.39 -8.42 16 15 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 16 C -0.31 -7.74 9.83 -38.66 -0.38 -8.12 16 17 C 0.27 7.66 6.53 -85.00 -0.56 7.11 16 18 C -0.43 -11.75 9.13 -37.73 -0.34 -12.09 16 19 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 20 C 0.06 1.59 5.48 -17.34 -0.10 1.50 16 21 N -0.66 -17.97 9.17 55.55 0.51 -17.46 16 22 Si 0.90 19.27 29.56 -169.99 -5.03 14.24 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 N -0.47 -13.20 5.77 -10.26 -0.06 -13.26 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.70 5.80 -51.92 -0.30 1.40 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.80 7.83 -51.93 -0.41 0.39 16 35 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 36 H 0.40 5.93 8.38 -40.82 -0.34 5.59 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 40 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 LS Contribution 323.81 15.07 4.88 4.88 Total: -1.00 -31.95 323.81 -8.84 -40.79 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.66 Total: 8.10 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -3.09 Total: -9.41 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.39 Total: -43.66 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.33 Total: -14.95 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.95 -8.84 -40.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.992 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds