Wall clock time and date at job start Tue Mar 31 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.57403 * 2 1 4 4 C 1.53102 * 109.59821 * 120.12323 * 2 1 3 5 5 O 1.42900 * 109.48375 * 177.42173 * 4 2 1 6 6 C 1.42896 * 114.09994 * 298.88431 * 5 4 2 7 7 C 1.53090 * 109.41451 * 61.16072 * 6 5 4 8 8 C 1.53175 * 109.16501 * 302.39196 * 7 6 5 9 9 H 1.08995 * 109.54201 * 297.02578 * 8 7 6 10 10 C 1.50697 * 109.54486 * 176.84382 * 8 7 6 11 11 O 1.21273 * 120.00064 * 240.17809 * 10 8 7 12 12 N 1.34781 * 120.00171 * 60.17642 * 10 8 7 13 13 C 1.39263 * 120.00452 * 185.50837 * 12 10 8 14 14 C 1.39670 * 119.57699 * 175.01898 * 13 12 10 15 15 C 1.38654 * 119.49954 * 180.02562 * 14 13 12 16 16 C 1.38353 * 118.66483 * 359.97438 * 15 14 13 17 17 C 1.40578 * 119.13235 * 0.02562 * 16 15 14 18 18 C 1.41335 * 119.78478 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00450 * 5.98907 * 18 17 16 20 20 C 1.40034 * 119.99597 * 185.98411 * 18 17 16 21 21 N 1.30743 * 119.99825 * 5.80449 * 20 18 17 22 22 Si 1.86799 * 119.99644 * 185.80998 * 20 18 17 23 23 H 1.48497 * 109.47364 * 85.00189 * 22 20 18 24 24 H 1.48497 * 109.47197 * 324.99108 * 22 20 18 25 25 H 1.48510 * 109.46611 * 204.99954 * 22 20 18 26 26 N 1.31905 * 119.57481 * 355.29692 * 13 12 10 27 27 H 1.09002 * 109.47193 * 180.15341 * 1 2 3 28 28 H 1.08997 * 109.47239 * 300.15866 * 1 2 3 29 29 H 1.09008 * 109.47042 * 60.15480 * 1 2 3 30 30 H 1.09000 * 109.40469 * 57.43609 * 4 2 1 31 31 H 1.09000 * 109.49039 * 297.45848 * 4 2 1 32 32 H 1.08998 * 109.48240 * 301.17721 * 6 5 4 33 33 H 1.09000 * 109.49405 * 181.14907 * 6 5 4 34 34 H 1.08996 * 109.52320 * 182.48273 * 7 6 5 35 35 H 1.09008 * 109.57358 * 62.32870 * 7 6 5 36 36 H 0.97001 * 119.99569 * 5.51267 * 12 10 8 37 37 H 1.07996 * 120.25117 * 0.02562 * 14 13 12 38 38 H 1.07996 * 120.66933 * 180.02562 * 15 14 13 39 39 H 1.08003 * 120.43335 * 179.97438 * 16 15 14 40 40 H 0.97003 * 119.99241 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7238 1.2475 5 8 3.4713 -0.7751 1.2151 6 6 4.0044 -1.4835 0.0944 7 6 3.5715 -0.7890 -1.1994 8 6 2.0419 -0.7252 -1.2484 9 1 1.6355 -1.7362 -1.2751 10 6 1.6078 0.0253 -2.4810 11 8 0.9506 1.0389 -2.3737 12 7 1.9500 -0.4298 -3.7026 13 6 1.6488 0.3222 -4.8354 14 6 2.0987 -0.1057 -6.0865 15 6 1.7983 0.6445 -7.2133 16 6 1.0562 1.8022 -7.0614 17 6 0.6325 2.1796 -5.7752 18 6 -0.1259 3.3599 -5.6041 19 1 -0.4606 3.9166 -6.4668 20 6 -0.4434 3.8075 -4.3157 21 7 0.0554 3.1996 -3.2712 22 14 -1.5797 5.2728 -4.0897 23 1 -2.9917 4.8143 -4.1241 24 1 -1.3498 6.2508 -5.1832 25 1 -1.3006 5.9183 -2.7816 26 7 0.9471 1.4323 -4.7123 27 1 -0.3634 -1.0277 0.0028 28 1 -0.3633 0.5163 0.8885 29 1 -0.3633 0.5115 -0.8914 30 1 1.6437 -1.7377 1.2683 31 1 1.7192 -0.1869 2.1389 32 1 3.6303 -2.5073 0.1001 33 1 5.0927 -1.4938 0.1548 34 1 3.9402 -1.3527 -2.0563 35 1 3.9793 0.2216 -1.2255 36 1 2.4060 -1.2811 -3.7927 37 1 2.6760 -1.0140 -6.1757 38 1 2.1362 0.3310 -8.1899 39 1 0.8063 2.4084 -7.9196 40 1 -0.1643 3.5099 -2.3787 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882472248.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:10 Heat of formation + Delta-G solvation = -56.033548 kcal Electronic energy + Delta-G solvation = -23828.138187 eV Core-core repulsion = 20414.437997 eV Total energy + Delta-G solvation = -3413.700190 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47839 -40.16688 -38.92506 -36.03433 -35.12276 -34.88126 -33.11902 -32.21879 -30.88547 -28.08060 -27.41610 -26.61288 -23.88527 -23.26748 -23.06081 -21.55596 -20.58717 -19.56245 -18.05983 -17.84669 -17.03025 -16.58224 -16.45473 -16.26797 -16.07565 -15.62151 -15.43370 -15.16146 -14.95907 -14.71897 -14.20323 -13.94433 -13.61122 -13.31728 -13.01641 -12.93176 -12.77294 -12.74129 -12.58240 -12.34979 -12.32452 -11.93733 -11.79576 -11.55989 -11.39688 -11.30603 -10.84321 -10.74659 -10.22422 -9.90580 -9.05064 -8.80014 -8.10079 -6.41321 0.92156 1.24913 1.37919 1.49694 1.51571 2.15138 2.24935 2.35450 2.98213 3.00746 3.61585 3.73666 3.80707 3.96950 4.06535 4.24517 4.30048 4.38847 4.50068 4.56396 4.64183 4.68956 4.75631 4.77485 4.83850 4.88988 4.95440 4.96282 5.06985 5.13628 5.18061 5.28396 5.39066 5.51805 5.68618 5.87537 5.92642 6.15588 6.29119 6.38130 6.75755 6.86078 7.08253 7.74405 8.34643 8.54987 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015878 B = 0.005842 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.061746 B = 4791.673872 C = 6253.697118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 H 0.048 0.952 4 C 0.073 3.927 5 O -0.404 6.404 6 C 0.064 3.936 7 C -0.142 4.142 8 C -0.091 4.091 9 H 0.118 0.882 10 C 0.465 3.535 11 O -0.451 6.451 12 N -0.656 5.656 13 C 0.350 3.650 14 C -0.347 4.347 15 C -0.035 4.035 16 C -0.332 4.332 17 C 0.239 3.761 18 C -0.469 4.469 19 H 0.084 0.916 20 C 0.015 3.985 21 N -0.691 5.691 22 Si 0.972 3.028 23 H -0.267 1.267 24 H -0.256 1.256 25 H -0.273 1.273 26 N -0.509 5.509 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.047 0.953 36 H 0.418 0.582 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 -11.469 8.201 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.067 0.933 4 C -0.003 4.003 5 O -0.323 6.323 6 C -0.012 4.012 7 C -0.180 4.180 8 C -0.113 4.113 9 H 0.136 0.864 10 C 0.249 3.751 11 O -0.318 6.318 12 N -0.305 5.305 13 C 0.111 3.889 14 C -0.372 4.372 15 C -0.059 4.059 16 C -0.355 4.355 17 C 0.113 3.887 18 C -0.500 4.500 19 H 0.102 0.898 20 C -0.210 4.210 21 N -0.310 5.310 22 Si 0.794 3.206 23 H -0.192 1.192 24 H -0.180 1.180 25 H -0.198 1.198 26 N -0.228 5.228 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.256 0.744 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.120 0.880 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.556 -10.346 9.576 14.816 hybrid contribution -0.241 0.234 -1.389 1.429 sum 4.315 -10.112 8.187 13.708 Atomic orbital electron populations 1.21785 0.94268 1.02003 1.02235 1.21475 0.96709 0.99275 0.94462 0.93299 1.22705 0.80271 1.00512 0.96826 1.87902 1.21119 1.77060 1.46181 1.22742 1.00133 0.94974 0.83388 1.22185 0.92750 1.02018 1.01040 1.21434 0.97784 1.00665 0.91413 0.86390 1.21603 0.81555 0.86977 0.84954 1.91083 1.32839 1.22560 1.85274 1.43457 1.59538 1.23267 1.04225 1.19167 0.92797 0.90691 0.86255 1.20987 1.17588 1.06885 0.91766 1.21033 0.93964 0.92795 0.98082 1.21802 1.13026 1.03054 0.97636 1.18852 0.90169 0.92353 0.87283 1.19856 1.29674 1.06543 0.93895 0.89821 1.26955 0.97926 1.00594 0.95571 1.70431 1.29930 1.32017 0.98578 0.85378 0.78624 0.78144 0.78496 1.19225 1.17953 1.19809 1.68614 1.17652 1.05093 1.31455 0.91527 0.92059 0.93670 0.90764 0.88026 0.90430 0.87119 0.88267 0.93413 0.74417 0.85042 0.84649 0.87965 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 8.93 71.98 0.64 -3.62 16 2 C -0.10 -2.81 2.05 -10.70 -0.02 -2.83 16 3 H 0.05 1.74 8.03 -2.39 -0.02 1.72 16 4 C 0.07 1.55 6.13 72.02 0.44 1.99 16 5 O -0.40 -9.43 10.77 -148.98 -1.60 -11.04 16 6 C 0.06 1.13 6.84 72.01 0.49 1.62 16 7 C -0.14 -3.17 5.31 30.68 0.16 -3.00 16 8 C -0.09 -2.45 2.11 -11.42 -0.02 -2.48 16 9 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 10 C 0.47 18.25 6.83 87.66 0.60 18.85 16 11 O -0.45 -22.71 9.75 -3.01 -0.03 -22.74 16 12 N -0.66 -24.78 5.27 -308.37 -1.62 -26.40 16 13 C 0.35 16.93 7.43 133.25 0.99 17.92 16 14 C -0.35 -14.83 9.95 22.72 0.23 -14.61 16 15 C -0.03 -1.52 10.15 22.40 0.23 -1.29 16 16 C -0.33 -17.05 9.83 22.87 0.22 -16.82 16 17 C 0.24 13.97 6.53 40.19 0.26 14.23 16 18 C -0.47 -27.09 9.13 23.47 0.21 -26.88 16 19 H 0.08 4.55 7.85 -2.91 -0.02 4.53 16 20 C 0.02 0.84 5.48 85.29 0.47 1.30 16 21 N -0.69 -39.96 9.17 21.84 0.20 -39.76 16 22 Si 0.97 41.37 29.56 68.60 2.03 43.39 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 N -0.51 -29.33 5.77 -186.37 -1.08 -30.41 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.77 5.80 -2.38 -0.01 1.76 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.74 7.83 -2.39 -0.02 1.72 16 35 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.42 11.42 8.38 -92.71 -0.78 10.65 16 37 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 39 H 0.10 4.92 8.06 -2.91 -0.02 4.89 16 40 H 0.27 14.80 8.29 -92.71 -0.77 14.03 16 Total: -1.00 -75.14 323.81 3.08 -72.06 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.27 Total: 30.51 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 4.91 Total: -15.61 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -2.50 Total: -96.57 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.63 Total: -33.78 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Total: -75.14 3.08 -72.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882472248.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.026 kcal (2) G-P(sol) polarization free energy of solvation -75.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds