Wall clock time and date at job start Tue Mar 31 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.48290 * 2 1 4 4 C 1.53093 * 109.48939 * 120.02517 * 2 1 3 5 5 C 1.53180 * 109.16532 * 177.59420 * 4 2 1 6 6 H 1.09002 * 109.61298 * 62.93455 * 5 4 2 7 7 C 1.50701 * 109.54143 * 183.15117 * 5 4 2 8 8 O 1.21271 * 120.00197 * 359.56210 * 7 5 4 9 9 N 1.34782 * 119.99843 * 179.55757 * 7 5 4 10 10 C 1.39261 * 120.00037 * 185.15713 * 9 7 5 11 11 C 1.39673 * 119.57424 * 174.68761 * 10 9 7 12 12 C 1.38652 * 119.49639 * 180.02562 * 11 10 9 13 13 C 1.38349 * 118.67030 * 0.02562 * 12 11 10 14 14 C 1.40578 * 119.12960 * 359.97438 * 13 12 11 15 15 C 1.41334 * 119.78981 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00012 * 0.02562 * 15 14 13 17 17 C 1.40031 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.30741 * 119.99668 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00029 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47104 * 60.00531 * 19 17 15 21 21 H 1.48501 * 109.46720 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47245 * 300.00093 * 19 17 15 23 23 N 1.31906 * 119.57495 * 354.71770 * 10 9 7 24 24 C 1.53171 * 109.03761 * 303.02146 * 5 4 2 25 25 C 1.53098 * 109.16446 * 56.97869 * 24 5 4 26 26 O 1.42906 * 109.48064 * 239.97347 * 2 1 3 27 27 H 1.08989 * 109.47485 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47119 * 300.03249 * 1 2 3 29 29 H 1.09006 * 109.46973 * 60.02272 * 1 2 3 30 30 H 1.09001 * 109.52326 * 57.69038 * 4 2 1 31 31 H 1.09005 * 109.52377 * 297.50254 * 4 2 1 32 32 H 0.96998 * 119.99668 * 5.15837 * 9 7 5 33 33 H 1.07997 * 120.24946 * 0.02562 * 11 10 9 34 34 H 1.08002 * 120.66502 * 179.97438 * 12 11 10 35 35 H 1.07993 * 120.43470 * 179.97438 * 13 12 11 36 36 H 0.97003 * 119.99972 * 179.97438 * 18 17 15 37 37 H 1.09004 * 109.52479 * 176.88347 * 24 5 4 38 38 H 1.09001 * 109.52432 * 297.00949 * 24 5 4 39 39 H 1.08997 * 109.48068 * 62.37168 * 25 24 5 40 40 H 1.08995 * 109.48189 * 182.41037 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7222 1.2495 5 6 3.5713 -0.7706 1.2120 6 1 3.9703 0.2433 1.2414 7 6 4.0803 -1.5472 2.3990 8 8 3.2978 -2.0098 3.2018 9 7 5.4052 -1.7278 2.5683 10 6 5.8714 -2.5345 3.6033 11 6 7.2378 -2.8058 3.7039 12 6 7.7001 -3.6096 4.7348 13 6 6.7859 -4.1221 5.6380 14 6 5.4235 -3.8124 5.4829 15 6 4.4775 -4.3288 6.3972 16 1 4.8022 -4.9588 7.2121 17 6 3.1193 -4.0228 6.2472 18 7 2.7262 -3.2597 5.2611 19 14 1.8692 -4.7047 7.4561 20 1 2.1947 -4.2304 8.8251 21 1 0.5108 -4.2375 7.0797 22 1 1.9082 -6.1888 7.4240 23 7 5.0167 -3.0330 4.4756 24 6 4.0178 -1.4598 -0.0810 25 6 3.4307 -0.7091 -1.2792 26 8 2.0065 -0.6742 -1.1664 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5143 0.8897 29 1 -0.3633 0.5135 -0.8902 30 1 1.6446 -1.7374 1.2710 31 1 1.7150 -0.1842 2.1399 32 1 6.0340 -1.2958 1.9692 33 1 7.9289 -2.3926 2.9843 34 1 8.7526 -3.8320 4.8302 35 1 7.1147 -4.7517 6.4514 36 1 1.7853 -3.0479 5.1569 37 1 5.1061 -1.4493 -0.1423 38 1 3.6626 -2.4903 -0.0860 39 1 3.8191 0.3092 -1.2960 40 1 3.7099 -1.2201 -2.2006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473418.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:19 Heat of formation + Delta-G solvation = -36.810073 kcal Electronic energy + Delta-G solvation = -23495.240370 eV Core-core repulsion = 20082.373773 eV Total energy + Delta-G solvation = -3412.866598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02101 -38.73344 -37.34422 -34.14832 -33.43403 -33.04958 -32.65220 -30.30006 -29.05149 -27.82393 -25.70340 -24.71417 -22.72205 -21.85947 -21.18213 -20.34419 -19.09014 -17.72902 -16.44669 -16.29555 -16.09180 -15.53919 -14.90680 -14.69583 -14.45771 -14.33823 -13.97635 -13.57388 -13.28343 -12.99266 -12.71744 -12.56044 -12.34082 -11.98762 -11.90014 -11.80450 -11.20770 -11.11483 -11.10165 -10.96709 -10.68467 -10.62811 -10.46574 -10.33757 -9.94987 -9.65332 -9.60283 -9.00753 -8.84076 -7.96288 -7.19754 -6.95739 -6.13458 -4.39818 2.78537 3.08130 3.16667 3.18503 3.27342 3.68224 3.75758 3.86417 4.06596 4.71384 4.85355 4.88820 4.93417 4.97866 5.14890 5.23473 5.40027 5.47827 5.60986 5.64700 5.64898 5.85000 5.92435 6.00975 6.04586 6.11692 6.15317 6.24674 6.47880 6.49150 6.69769 6.84369 6.85377 7.22089 7.24230 7.55833 7.63426 7.81420 8.07180 8.20808 8.47461 8.74868 9.05278 9.28893 10.25145 10.48573 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015530 B = 0.005417 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.510450 B = 5167.923031 C = 6799.045498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.055 0.945 4 C -0.126 4.126 5 C -0.108 4.108 6 H 0.086 0.914 7 C 0.474 3.526 8 O -0.405 6.405 9 N -0.667 5.667 10 C 0.371 3.629 11 C -0.358 4.358 12 C -0.036 4.036 13 C -0.306 4.306 14 C 0.271 3.729 15 C -0.426 4.426 16 H 0.082 0.918 17 C 0.058 3.942 18 N -0.655 5.655 19 Si 0.896 3.104 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.267 1.267 23 N -0.473 5.473 24 C -0.146 4.146 25 C 0.066 3.934 26 O -0.382 6.382 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.397 0.603 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.273 0.727 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.049 0.951 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 7.374 -10.993 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.073 0.927 4 C -0.165 4.165 5 C -0.130 4.130 6 H 0.104 0.896 7 C 0.256 3.744 8 O -0.268 6.268 9 N -0.314 5.314 10 C 0.133 3.867 11 C -0.384 4.384 12 C -0.061 4.061 13 C -0.329 4.329 14 C 0.146 3.854 15 C -0.456 4.456 16 H 0.100 0.900 17 C -0.171 4.171 18 N -0.274 5.274 19 Si 0.720 3.280 20 H -0.192 1.192 21 H -0.204 1.204 22 H -0.192 1.192 23 N -0.192 5.192 24 C -0.184 4.184 25 C -0.011 4.011 26 O -0.302 6.302 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.230 0.770 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.159 7.231 -10.715 13.307 hybrid contribution 1.166 -0.123 0.469 1.262 sum -1.994 7.108 -10.246 12.629 Atomic orbital electron populations 1.21746 0.93089 1.03116 1.02136 1.22140 0.95101 0.94719 0.85133 0.92705 1.22013 0.93392 1.03152 0.97898 1.21409 0.97444 0.99930 0.94224 0.89551 1.20616 0.83101 0.83157 0.87564 1.91141 1.53553 1.41839 1.40316 1.43443 1.07513 1.49239 1.31162 1.18649 0.88911 0.90561 0.88617 1.20494 0.93830 1.16822 1.07238 1.20559 0.97138 0.94758 0.93611 1.21621 0.95020 1.11873 1.04415 1.18387 0.89654 0.87997 0.89387 1.19549 0.90937 1.25602 1.09519 0.90026 1.26174 0.99564 0.95361 0.96031 1.70312 1.16509 1.19380 1.21202 0.86581 0.79728 0.80162 0.81493 1.19183 1.20388 1.19181 1.68713 1.32460 1.14068 1.03976 1.22175 1.01187 1.01149 0.93909 1.22531 0.81201 0.99283 0.98105 1.87913 1.20859 1.78169 1.43229 0.91661 0.90992 0.92147 0.89996 0.90183 0.76980 0.89180 0.88675 0.88604 0.91569 0.90583 0.90399 0.93285 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.56 37.16 0.36 -1.16 16 2 C 0.09 1.03 3.26 -26.68 -0.09 0.95 16 3 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -1.82 4.01 -26.59 -0.11 -1.93 16 5 C -0.11 -1.54 2.61 -91.59 -0.24 -1.78 16 6 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 7 C 0.47 9.41 7.12 -10.98 -0.08 9.33 16 8 O -0.41 -10.06 11.74 5.57 0.07 -9.99 16 9 N -0.67 -13.04 5.26 -11.40 -0.06 -13.10 16 10 C 0.37 9.09 7.43 -154.98 -1.15 7.94 16 11 C -0.36 -8.09 9.95 -38.89 -0.39 -8.48 16 12 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 13 C -0.31 -7.79 9.83 -38.66 -0.38 -8.17 16 14 C 0.27 7.67 6.55 -85.00 -0.56 7.12 16 15 C -0.43 -11.80 9.14 -37.73 -0.34 -12.14 16 16 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 17 C 0.06 1.53 5.50 -17.34 -0.10 1.44 16 18 N -0.66 -18.18 8.99 55.55 0.50 -17.68 16 19 Si 0.90 19.37 29.56 -169.99 -5.02 14.35 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 N -0.47 -13.34 5.74 -10.26 -0.06 -13.40 16 24 C -0.15 -1.78 5.30 -26.59 -0.14 -1.92 16 25 C 0.07 0.69 6.84 37.21 0.25 0.95 16 26 O -0.38 -4.94 10.41 -35.23 -0.37 -5.31 16 27 H 0.06 0.73 8.14 -51.94 -0.42 0.31 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.40 5.99 8.35 -40.82 -0.34 5.65 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.27 7.10 8.29 -40.82 -0.34 6.77 16 37 H 0.08 0.79 7.81 -51.93 -0.41 0.39 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -32.81 328.07 -9.14 -41.95 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.78 Total: 7.34 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -3.36 Total: -9.09 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.38 Total: -44.19 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.30 Total: -15.30 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.81 -9.14 -41.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473418.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.140 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds