Wall clock time and date at job start Tue Mar 31 2020 06:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00083 * 2 1 4 4 O 1.42906 * 109.46733 * 134.99948 * 3 2 1 5 5 C 1.42907 * 113.99612 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.46802 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47176 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47454 * 180.02562 * 7 6 5 9 9 O 1.21270 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00012 * 179.97438 * 8 7 6 11 11 C 1.39269 * 119.99964 * 185.57631 * 10 8 7 12 12 C 1.39677 * 119.57439 * 18.84009 * 11 10 8 13 13 C 1.38648 * 119.49539 * 180.02562 * 12 11 10 14 14 C 1.38350 * 118.67018 * 359.74722 * 13 12 11 15 15 C 1.40580 * 119.12988 * 0.49956 * 14 13 12 16 16 C 1.41334 * 119.78852 * 179.76636 * 15 14 13 17 17 H 1.08006 * 120.00068 * 8.66345 * 16 15 14 18 18 C 1.40023 * 120.00186 * 188.65792 * 16 15 14 19 19 N 1.30745 * 120.00258 * 195.97429 * 18 16 15 20 20 Si 1.86800 * 119.99570 * 15.97840 * 18 16 15 21 21 H 1.48499 * 109.47452 * 269.99427 * 20 18 16 22 22 H 1.48495 * 109.47573 * 30.00071 * 20 18 16 23 23 H 1.48507 * 109.47135 * 149.99717 * 20 18 16 24 24 N 1.31903 * 119.57571 * 198.86332 * 11 10 8 25 25 H 1.08000 * 119.99847 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00114 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99847 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47105 * 15.00310 * 3 2 1 29 29 H 1.09000 * 109.47103 * 254.99934 * 3 2 1 30 30 H 1.08992 * 109.46856 * 59.99777 * 5 4 3 31 31 H 1.08999 * 109.46710 * 300.00246 * 5 4 3 32 32 H 1.08994 * 109.47613 * 59.99590 * 6 5 4 33 33 H 1.09003 * 109.47124 * 299.99888 * 6 5 4 34 34 H 1.08994 * 109.47350 * 59.99226 * 7 6 5 35 35 H 1.09003 * 109.46836 * 299.99861 * 7 6 5 36 36 H 0.96998 * 120.00306 * 5.58151 * 10 8 7 37 37 H 1.08002 * 120.24734 * 0.02562 * 12 11 10 38 38 H 1.08000 * 120.66569 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.43419 * 180.24614 * 14 13 12 40 40 H 0.96992 * 119.99715 * 354.93531 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4352 1.0329 6 6 5.0106 2.2539 2.0777 7 6 5.8465 3.5324 2.1641 8 6 6.9332 3.3537 3.1927 9 8 7.0294 2.3070 3.7976 10 7 7.7982 4.3571 3.4405 11 6 8.8716 4.1538 4.3043 12 6 9.2838 2.8517 4.5971 13 6 10.3522 2.6512 5.4577 14 6 10.9847 3.7560 5.9993 15 6 10.5192 5.0410 5.6698 16 6 11.1519 6.1792 6.2190 17 1 12.0716 6.0704 6.7747 18 6 10.5863 7.4480 6.0428 19 7 11.3019 8.5193 6.2651 20 14 8.8093 7.6097 5.4900 21 1 8.7542 7.6523 4.0067 22 1 8.0301 6.4449 5.9811 23 1 8.2309 8.8608 6.0430 24 7 9.4856 5.1932 4.8357 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3856 2.1160 0.2660 29 1 2.4756 1.4867 -0.9926 30 1 3.2678 3.2693 1.3205 31 1 4.3580 2.6407 0.0618 32 1 5.6505 1.4198 1.7897 33 1 4.5607 2.0481 3.0490 34 1 5.2064 4.3662 2.4523 35 1 6.2964 3.7387 1.1929 36 1 7.6732 5.2209 3.0173 37 1 8.7741 2.0076 4.1565 38 1 10.6870 1.6526 5.6968 39 1 11.8224 3.6329 6.6698 40 1 12.2000 8.4372 6.6222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:24 Heat of formation + Delta-G solvation = -44.429745 kcal Electronic energy + Delta-G solvation = -21708.715499 eV Core-core repulsion = 18295.518487 eV Total energy + Delta-G solvation = -3413.197011 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.18436 -38.54544 -38.08446 -34.82015 -34.49589 -33.54886 -33.21283 -31.07447 -29.71119 -27.64814 -25.81707 -25.23589 -22.88011 -21.78684 -21.31956 -20.22646 -19.81208 -18.37727 -17.50172 -16.82089 -16.67824 -16.48278 -15.70419 -15.40980 -15.02869 -14.47879 -14.34310 -13.97260 -13.85689 -13.41568 -13.13652 -12.81069 -12.64835 -12.37239 -12.26314 -12.09331 -11.86271 -11.46544 -11.25250 -11.16305 -11.08476 -10.86478 -10.33453 -10.16822 -9.99224 -9.74914 -9.66902 -9.21101 -9.09275 -8.51997 -7.92255 -7.41676 -7.28335 -4.76418 1.76280 2.21044 2.66837 3.03788 3.14819 3.44948 3.59234 3.61773 3.89091 4.31958 4.53940 4.58493 4.64382 4.71599 4.76787 4.97253 4.97691 5.09582 5.17752 5.19244 5.25774 5.43599 5.47188 5.54137 5.87324 5.94306 6.07942 6.13078 6.16688 6.25654 6.47423 6.53364 6.57227 6.91605 7.14431 7.20566 7.43289 7.57906 7.61941 7.78331 8.11386 8.29429 8.45374 8.65567 9.43530 9.96677 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029232 B = 0.002781 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.615267 B =10067.422003 C =10869.738957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.088 3.912 4 O -0.383 6.383 5 C 0.063 3.937 6 C -0.104 4.104 7 C -0.136 4.136 8 C 0.514 3.486 9 O -0.512 6.512 10 N -0.656 5.656 11 C 0.382 3.618 12 C -0.311 4.311 13 C -0.037 4.037 14 C -0.278 4.278 15 C 0.274 3.726 16 C -0.482 4.482 17 H 0.084 0.916 18 C 0.049 3.951 19 N -0.804 5.804 20 Si 1.144 2.856 21 H -0.288 1.288 22 H -0.280 1.280 23 H -0.327 1.327 24 N -0.595 5.595 25 H 0.097 0.903 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.407 0.593 37 H 0.138 0.862 38 H 0.105 0.895 39 H 0.105 0.895 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.304 -8.762 -12.765 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.014 4.014 6 C -0.141 4.141 7 C -0.176 4.176 8 C 0.301 3.699 9 O -0.387 6.387 10 N -0.301 5.301 11 C 0.151 3.849 12 C -0.335 4.335 13 C -0.061 4.061 14 C -0.300 4.300 15 C 0.150 3.850 16 C -0.514 4.514 17 H 0.102 0.898 18 C -0.173 4.173 19 N -0.426 5.426 20 Si 0.977 3.023 21 H -0.215 1.215 22 H -0.208 1.208 23 H -0.259 1.259 24 N -0.320 5.320 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.135 0.865 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.242 0.758 37 H 0.156 0.844 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.487 -7.739 -12.821 23.023 hybrid contribution 1.690 -1.164 0.330 2.078 sum -15.797 -8.903 -12.491 22.019 Atomic orbital electron populations 1.23845 0.95571 1.02286 1.00206 1.22773 0.95663 0.98323 1.00115 1.21534 0.89000 0.95825 0.92509 1.87928 1.44587 1.37328 1.60434 1.22527 0.92849 0.87101 0.98920 1.21212 0.95807 0.97234 0.99894 1.21544 0.96548 1.00345 0.99169 1.20541 0.82170 0.83556 0.83633 1.90642 1.71425 1.27341 1.49275 1.43332 1.26032 1.15645 1.45113 1.18117 0.86756 0.90455 0.89622 1.21525 1.04893 0.96001 1.11105 1.20924 0.93661 0.97369 0.94175 1.21615 1.06009 0.93102 1.09289 1.18186 0.86543 0.92750 0.87536 1.20656 1.08618 0.92011 1.30073 0.89838 1.27660 1.07644 0.91012 0.91018 1.70613 1.11608 1.32337 1.27999 0.82129 0.71387 0.72153 0.76640 1.21501 1.20760 1.25917 1.66184 1.15728 1.31299 1.18785 0.88434 0.87782 0.86517 0.92794 0.92347 0.93113 0.93122 0.90069 0.90069 0.88408 0.88348 0.75753 0.84427 0.87656 0.87721 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 14.31 29.01 0.42 -0.73 16 2 C -0.15 -1.16 9.89 -36.03 -0.36 -1.51 16 3 C 0.09 0.70 6.35 36.01 0.23 0.93 16 4 O -0.38 -4.11 10.33 -35.23 -0.36 -4.47 16 5 C 0.06 0.55 5.94 37.15 0.22 0.77 16 6 C -0.10 -1.11 4.87 -26.74 -0.13 -1.24 16 7 C -0.14 -1.38 5.70 -27.88 -0.16 -1.54 16 8 C 0.51 8.21 7.67 -10.99 -0.08 8.12 16 9 O -0.51 -9.95 12.78 5.57 0.07 -9.88 16 10 N -0.66 -11.84 5.41 -11.40 -0.06 -11.91 16 11 C 0.38 8.77 7.51 -154.98 -1.16 7.61 16 12 C -0.31 -7.08 8.83 -38.89 -0.34 -7.42 16 13 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 14 C -0.28 -6.72 9.83 -38.66 -0.38 -7.10 16 15 C 0.27 7.25 6.27 -85.00 -0.53 6.72 16 16 C -0.48 -13.14 9.51 -37.74 -0.36 -13.50 16 17 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 18 C 0.05 1.31 5.51 -17.35 -0.10 1.21 16 19 N -0.80 -21.71 13.65 55.55 0.76 -20.96 16 20 Si 1.14 27.40 25.93 -169.99 -4.41 22.99 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.91 6.55 56.52 0.37 -6.54 16 23 H -0.33 -7.68 7.11 56.52 0.40 -7.28 16 24 N -0.60 -15.10 5.07 -10.25 -0.05 -15.15 16 25 H 0.10 0.52 7.90 -52.49 -0.41 0.11 16 26 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 27 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.05 0.37 7.86 -51.93 -0.41 -0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.41 6.27 8.83 -40.82 -0.36 5.91 16 37 H 0.14 3.06 5.33 -52.50 -0.28 2.78 16 38 H 0.11 2.01 8.06 -52.49 -0.42 1.58 16 39 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 40 H 0.28 7.36 8.72 -40.82 -0.36 7.00 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -31.92 342.12 -7.76 -39.68 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.72 Total: 3.45 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -3.14 Total: -8.91 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 0.64 Total: -48.01 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.29 Total: -14.36 kcal Atomic # 14 Polarization: 27.40 SS G_CDS: -4.41 Total: 22.99 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.92 -7.76 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.752 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds