Wall clock time and date at job start Tue Mar 31 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00083 * 2 1 4 4 O 1.42906 * 109.46733 * 134.99948 * 3 2 1 5 5 C 1.42907 * 113.99612 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.46802 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47176 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47454 * 180.02562 * 7 6 5 9 9 O 1.21270 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00012 * 179.97438 * 8 7 6 11 11 C 1.39269 * 119.99964 * 185.57631 * 10 8 7 12 12 C 1.39677 * 119.57439 * 18.84009 * 11 10 8 13 13 C 1.38648 * 119.49539 * 180.02562 * 12 11 10 14 14 C 1.38350 * 118.67018 * 359.74722 * 13 12 11 15 15 C 1.40580 * 119.12988 * 0.49956 * 14 13 12 16 16 C 1.41334 * 119.78852 * 179.76636 * 15 14 13 17 17 H 1.08006 * 120.00068 * 8.66345 * 16 15 14 18 18 C 1.40023 * 120.00186 * 188.65792 * 16 15 14 19 19 N 1.30745 * 120.00258 * 195.97429 * 18 16 15 20 20 Si 1.86800 * 119.99570 * 15.97840 * 18 16 15 21 21 H 1.48499 * 109.47452 * 269.99427 * 20 18 16 22 22 H 1.48495 * 109.47573 * 30.00071 * 20 18 16 23 23 H 1.48507 * 109.47135 * 149.99717 * 20 18 16 24 24 N 1.31903 * 119.57571 * 198.86332 * 11 10 8 25 25 H 1.08000 * 119.99847 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00114 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.99847 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47105 * 15.00310 * 3 2 1 29 29 H 1.09000 * 109.47103 * 254.99934 * 3 2 1 30 30 H 1.08992 * 109.46856 * 59.99777 * 5 4 3 31 31 H 1.08999 * 109.46710 * 300.00246 * 5 4 3 32 32 H 1.08994 * 109.47613 * 59.99590 * 6 5 4 33 33 H 1.09003 * 109.47124 * 299.99888 * 6 5 4 34 34 H 1.08994 * 109.47350 * 59.99226 * 7 6 5 35 35 H 1.09003 * 109.46836 * 299.99861 * 7 6 5 36 36 H 0.96998 * 120.00306 * 5.58151 * 10 8 7 37 37 H 1.08002 * 120.24734 * 0.02562 * 12 11 10 38 38 H 1.08000 * 120.66569 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.43419 * 180.24614 * 14 13 12 40 40 H 0.96992 * 119.99715 * 354.93531 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4352 1.0329 6 6 5.0106 2.2539 2.0777 7 6 5.8465 3.5324 2.1641 8 6 6.9332 3.3537 3.1927 9 8 7.0294 2.3070 3.7976 10 7 7.7982 4.3571 3.4405 11 6 8.8716 4.1538 4.3043 12 6 9.2838 2.8517 4.5971 13 6 10.3522 2.6512 5.4577 14 6 10.9847 3.7560 5.9993 15 6 10.5192 5.0410 5.6698 16 6 11.1519 6.1792 6.2190 17 1 12.0716 6.0704 6.7747 18 6 10.5863 7.4480 6.0428 19 7 11.3019 8.5193 6.2651 20 14 8.8093 7.6097 5.4900 21 1 8.7542 7.6523 4.0067 22 1 8.0301 6.4449 5.9811 23 1 8.2309 8.8608 6.0430 24 7 9.4856 5.1932 4.8357 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3856 2.1160 0.2660 29 1 2.4756 1.4867 -0.9926 30 1 3.2678 3.2693 1.3205 31 1 4.3580 2.6407 0.0618 32 1 5.6505 1.4198 1.7897 33 1 4.5607 2.0481 3.0490 34 1 5.2064 4.3662 2.4523 35 1 6.2964 3.7387 1.1929 36 1 7.6732 5.2209 3.0173 37 1 8.7741 2.0076 4.1565 38 1 10.6870 1.6526 5.6968 39 1 11.8224 3.6329 6.6698 40 1 12.2000 8.4372 6.6222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882474184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:23 Heat of formation + Delta-G solvation = -64.212717 kcal Electronic energy + Delta-G solvation = -21709.573353 eV Core-core repulsion = 18295.518487 eV Total energy + Delta-G solvation = -3414.054865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.66869 -39.93659 -39.08060 -36.29526 -35.38593 -35.33393 -34.02658 -32.95134 -31.42857 -28.57034 -27.23599 -26.38322 -24.16441 -23.57444 -22.47552 -21.32653 -20.75531 -20.27769 -18.88910 -18.00902 -17.55523 -17.43770 -16.91467 -16.66801 -16.41719 -16.03728 -15.62578 -15.29659 -15.16965 -14.68833 -14.50638 -14.27131 -14.08547 -13.72845 -13.50600 -13.19372 -12.93860 -12.90291 -12.69911 -12.16600 -12.11178 -11.90691 -11.84705 -11.79158 -11.56707 -11.03678 -10.77295 -10.71117 -10.38974 -10.21550 -9.84696 -9.32262 -9.20297 -6.80079 0.51718 0.76372 1.24822 1.51898 1.56463 1.75553 1.86699 2.02103 2.41474 2.63708 2.87119 3.54263 3.60849 3.97551 4.02810 4.09084 4.20548 4.24952 4.35262 4.44280 4.48232 4.55088 4.57070 4.62747 4.67624 4.69646 4.72241 4.83119 4.99570 5.14729 5.28244 5.36539 5.40094 5.45122 5.67131 5.73116 5.73860 5.82973 5.95802 6.30961 6.32814 6.43884 6.66124 7.10744 7.53408 7.92875 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029232 B = 0.002781 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.615267 B =10067.422003 C =10869.738957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.176 4.176 3 C 0.084 3.916 4 O -0.414 6.414 5 C 0.064 3.936 6 C -0.100 4.100 7 C -0.121 4.121 8 C 0.513 3.487 9 O -0.550 6.550 10 N -0.653 5.653 11 C 0.373 3.627 12 C -0.311 4.311 13 C -0.032 4.032 14 C -0.296 4.296 15 C 0.257 3.743 16 C -0.513 4.513 17 H 0.067 0.933 18 C 0.020 3.980 19 N -0.824 5.824 20 Si 1.176 2.824 21 H -0.268 1.268 22 H -0.293 1.293 23 H -0.321 1.321 24 N -0.606 5.606 25 H 0.109 0.891 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.421 0.579 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.655 -9.150 -14.846 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.194 4.194 3 C 0.009 3.991 4 O -0.334 6.334 5 C -0.012 4.012 6 C -0.139 4.139 7 C -0.160 4.160 8 C 0.303 3.697 9 O -0.426 6.426 10 N -0.300 5.300 11 C 0.141 3.859 12 C -0.335 4.335 13 C -0.056 4.056 14 C -0.319 4.319 15 C 0.132 3.868 16 C -0.546 4.546 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.447 5.447 20 Si 1.006 2.994 21 H -0.194 1.194 22 H -0.221 1.221 23 H -0.253 1.253 24 N -0.331 5.331 25 H 0.127 0.873 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.259 0.741 37 H 0.164 0.836 38 H 0.158 0.842 39 H 0.131 0.869 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.850 -8.118 -14.939 26.136 hybrid contribution 2.328 -1.281 0.936 2.817 sum -17.522 -9.398 -14.004 24.320 Atomic orbital electron populations 1.24054 0.95180 1.03365 0.98210 1.22847 0.96304 0.98222 1.02022 1.21680 0.88657 0.96232 0.92557 1.87886 1.45555 1.38487 1.61461 1.22552 0.92465 0.87062 0.99132 1.21143 0.96226 0.96967 0.99529 1.21593 0.94782 1.01011 0.98622 1.21671 0.82219 0.82203 0.83655 1.90614 1.72422 1.28774 1.50828 1.43458 1.25085 1.17139 1.44299 1.18514 0.87566 0.90129 0.89737 1.21877 1.04585 0.96455 1.10610 1.21321 0.92790 0.98524 0.92951 1.21770 1.06879 0.92988 1.10230 1.18378 0.87199 0.93345 0.87837 1.20652 1.08974 0.93054 1.31873 0.91464 1.28506 1.09626 0.90811 0.90835 1.70638 1.11808 1.32487 1.29736 0.81721 0.68546 0.71638 0.77530 1.19376 1.22078 1.25316 1.66197 1.15702 1.32350 1.18877 0.87291 0.86784 0.87306 0.91613 0.91203 0.91273 0.91073 0.91956 0.92301 0.85178 0.84847 0.74100 0.83563 0.84169 0.86916 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 14.31 67.78 0.97 -0.86 16 2 C -0.18 -2.48 9.89 25.64 0.25 -2.23 16 3 C 0.08 1.17 6.35 71.24 0.45 1.63 16 4 O -0.41 -8.14 10.33 -148.98 -1.54 -9.67 16 5 C 0.06 0.92 5.94 71.98 0.43 1.35 16 6 C -0.10 -1.92 4.87 30.59 0.15 -1.78 16 7 C -0.12 -1.97 5.70 29.85 0.17 -1.80 16 8 C 0.51 15.02 7.67 87.66 0.67 15.70 16 9 O -0.55 -20.54 12.78 -3.00 -0.04 -20.58 16 10 N -0.65 -21.91 5.41 -308.37 -1.67 -23.58 16 11 C 0.37 16.54 7.51 133.25 1.00 17.54 16 12 C -0.31 -13.67 8.83 22.72 0.20 -13.47 16 13 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 14 C -0.30 -14.27 9.83 22.87 0.22 -14.04 16 15 C 0.26 13.71 6.27 40.19 0.25 13.96 16 16 C -0.51 -28.76 9.51 23.46 0.22 -28.54 16 17 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 18 C 0.02 1.08 5.51 85.29 0.47 1.55 16 19 N -0.82 -45.35 13.65 21.84 0.30 -45.05 16 20 Si 1.18 54.98 25.93 68.60 1.78 56.76 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.29 -14.15 6.55 99.48 0.65 -13.50 16 23 H -0.32 -14.54 7.11 99.48 0.71 -13.84 16 24 N -0.61 -30.25 5.07 -186.35 -0.95 -31.20 16 25 H 0.11 0.89 7.90 -2.91 -0.02 0.87 16 26 H 0.11 0.94 8.06 -2.91 -0.02 0.92 16 27 H 0.11 1.63 8.06 -2.91 -0.02 1.61 16 28 H 0.07 0.73 7.86 -2.39 -0.02 0.71 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 33 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.13 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.13 1.37 8.14 -2.39 -0.02 1.36 16 36 H 0.42 11.61 8.83 -92.71 -0.82 10.79 16 37 H 0.15 6.24 5.33 -3.17 -0.02 6.23 16 38 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 39 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 40 H 0.28 15.07 8.72 -92.71 -0.81 14.26 16 Total: -1.00 -70.33 342.12 3.71 -66.63 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.13 Total: 18.82 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 5.69 Total: -12.12 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -2.32 Total: -99.83 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -1.58 Total: -30.25 kcal Atomic # 14 Polarization: 54.98 SS G_CDS: 1.78 Total: 56.76 kcal Total: -70.33 3.71 -66.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.413 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds