Wall clock time and date at job start Tue Mar 31 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 112.93978 * 2 1 4 4 C 1.53944 * 113.74365 * 228.41570 * 2 1 3 5 5 N 1.47583 * 86.11566 * 269.15180 * 4 2 1 6 6 C 1.34768 * 134.49709 * 155.36079 * 5 4 2 7 7 O 1.21598 * 120.00270 * 179.97438 * 6 5 4 8 8 N 1.34776 * 120.00264 * 359.97438 * 6 5 4 9 9 C 1.39938 * 120.00355 * 174.74282 * 8 6 5 10 10 C 1.38963 * 120.03339 * 146.43326 * 9 8 6 11 11 C 1.38162 * 120.06674 * 180.02562 * 10 9 8 12 12 C 1.38170 * 120.13445 * 359.97438 * 11 10 9 13 13 C 1.38906 * 120.07406 * 0.02562 * 12 11 10 14 14 O 1.35752 * 120.03255 * 179.97438 * 13 12 11 15 15 C 1.34829 * 117.00363 * 5.91286 * 14 13 12 16 16 H 1.08002 * 119.99548 * 5.40675 * 15 14 13 17 17 C 1.38645 * 120.00202 * 185.40603 * 15 14 13 18 18 N 1.31557 * 119.99983 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99921 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46838 * 90.00514 * 19 17 15 21 21 H 1.48504 * 109.47004 * 210.00106 * 19 17 15 22 22 H 1.48496 * 109.47504 * 330.00419 * 19 17 15 23 23 C 1.38701 * 120.03714 * 326.15924 * 9 8 6 24 24 C 1.47592 * 91.01237 * 335.35782 * 5 4 2 25 25 H 1.08995 * 113.77056 * 270.34343 * 24 5 4 26 26 C 1.52999 * 113.76585 * 138.94096 * 24 5 4 27 27 H 1.09004 * 109.46825 * 170.32952 * 1 2 3 28 28 H 1.09003 * 109.47171 * 290.32765 * 1 2 3 29 29 H 1.09000 * 109.47527 * 50.33156 * 1 2 3 30 30 H 1.08996 * 113.76880 * 23.44710 * 4 2 1 31 31 H 1.08998 * 113.77111 * 154.85377 * 4 2 1 32 32 H 0.97005 * 119.99465 * 354.74670 * 8 6 5 33 33 H 1.08004 * 119.96743 * 359.97438 * 10 9 8 34 34 H 1.08001 * 119.92966 * 179.97438 * 11 10 9 35 35 H 1.08000 * 119.95868 * 180.02562 * 12 11 10 36 36 H 0.97001 * 119.99964 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.06937 * 359.97438 * 23 9 8 38 38 H 1.08994 * 109.47454 * 323.50696 * 26 24 5 39 39 H 1.08998 * 109.46910 * 83.51007 * 26 24 5 40 40 H 1.09008 * 109.46815 * 203.50449 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9549 1.0038 0.0000 4 6 2.1499 -0.9353 -1.0540 5 7 2.1296 -1.9699 -0.0018 6 6 2.1016 -3.3173 -0.0024 7 8 2.0906 -3.9258 1.0503 8 7 2.0858 -3.9905 -1.1699 9 6 2.1678 -5.3875 -1.1733 10 6 1.4978 -6.1212 -2.1448 11 6 1.5779 -7.5005 -2.1485 12 6 2.3244 -8.1545 -1.1873 13 6 2.9964 -7.4268 -0.2135 14 8 3.7292 -8.0703 0.7309 15 6 3.8644 -9.4051 0.5965 16 1 3.4747 -9.9017 -0.2798 17 6 4.5035 -10.1400 1.5832 18 7 4.9777 -9.5350 2.6509 19 14 4.6901 -11.9893 1.3973 20 1 5.9640 -12.2903 0.6959 21 1 4.7029 -12.6230 2.7403 22 1 3.5519 -12.5249 0.6081 23 6 2.9226 -6.0410 -0.2105 24 6 2.1523 -0.9364 1.0516 25 1 3.1564 -0.6452 1.3598 26 6 1.2275 -1.2389 2.2322 27 1 -0.3633 -1.0131 -0.1726 28 1 -0.3634 0.3570 0.9637 29 1 -0.3634 0.6560 -0.7910 30 1 1.4891 -1.1499 -1.8938 31 1 3.1533 -0.6438 -1.3642 32 1 2.0176 -3.5066 -2.0079 33 1 0.9132 -5.6128 -2.8973 34 1 1.0559 -8.0685 -2.9044 35 1 2.3854 -9.2328 -1.1931 36 1 5.4246 -10.0492 3.3414 37 1 3.4481 -5.4728 0.5427 38 1 0.3189 -1.7187 1.8685 39 1 1.7353 -1.9043 2.9304 40 1 0.9693 -0.3089 2.7391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887662845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:45 Heat of formation + Delta-G solvation = 10.890244 kcal Electronic energy + Delta-G solvation = -22712.125512 eV Core-core repulsion = 19301.327355 eV Total energy + Delta-G solvation = -3410.798157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.84587 -39.29554 -38.12566 -36.30169 -33.96472 -32.19304 -31.59608 -30.17954 -29.38387 -28.41331 -26.69146 -25.20517 -23.72882 -22.37290 -21.39879 -20.57304 -18.86853 -18.17600 -17.84620 -17.03890 -16.29744 -15.74461 -15.00144 -14.82769 -14.64167 -14.62125 -14.13214 -13.93408 -13.66223 -13.44926 -13.26924 -12.76932 -12.45054 -12.31528 -12.11204 -12.02660 -11.75439 -11.63419 -11.40938 -11.30289 -11.09000 -10.92253 -10.72455 -10.65491 -10.41845 -9.79452 -9.63575 -9.18789 -8.75924 -8.71491 -7.56877 -7.10391 -6.36177 -3.95414 2.13245 2.41850 2.50514 3.17712 3.18474 3.23671 3.44763 3.83592 4.01727 4.06009 4.56805 4.64629 4.74681 5.03483 5.06584 5.11816 5.15114 5.19381 5.28118 5.40549 5.50556 5.56003 5.63809 5.68661 5.80235 5.89041 5.91364 6.02438 6.18124 6.28496 6.31364 6.46427 6.72527 6.97452 7.10501 7.15337 7.40668 7.42356 7.55224 7.89575 8.08483 8.13499 8.80286 9.08647 9.81279 10.81916 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026361 B = 0.003484 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.937687 B = 8034.065086 C = 8818.006644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 H 0.092 0.908 4 C 0.100 3.900 5 N -0.661 5.661 6 C 0.722 3.278 7 O -0.556 6.556 8 N -0.681 5.681 9 C 0.198 3.802 10 C -0.238 4.238 11 C -0.057 4.057 12 C -0.247 4.247 13 C 0.169 3.831 14 O -0.175 6.175 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.274 1.274 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.188 4.188 24 C 0.158 3.842 25 H 0.091 0.909 26 C -0.153 4.153 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.399 0.601 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.269 0.731 37 H 0.129 0.871 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.187 18.795 -8.749 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.142 4.142 3 H 0.111 0.889 4 C -0.023 4.023 5 N -0.402 5.402 6 C 0.425 3.575 7 O -0.430 6.430 8 N -0.328 5.328 9 C 0.104 3.896 10 C -0.260 4.260 11 C -0.076 4.076 12 C -0.267 4.267 13 C 0.115 3.885 14 O -0.078 6.078 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.209 4.209 24 C 0.054 3.946 25 H 0.108 0.892 26 C -0.211 4.211 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.233 0.767 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.147 0.853 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.937 18.158 -7.500 20.834 hybrid contribution 0.118 -0.747 -0.647 0.995 sum -6.819 17.411 -8.147 20.396 Atomic orbital electron populations 1.21566 0.92948 1.02332 1.02133 1.23058 0.97104 0.98280 0.95758 0.88941 1.23216 1.00640 0.85600 0.92840 1.49314 1.78775 1.01933 1.10212 1.15496 0.77859 0.79794 0.84325 1.91028 1.55929 1.65847 1.30224 1.42469 1.77307 1.05442 1.07556 1.16942 0.95928 0.80023 0.96740 1.20222 1.08072 0.94020 1.03672 1.20480 0.96911 0.93189 0.97056 1.21161 1.05459 1.00658 0.99420 1.19116 0.89470 0.91240 0.88717 1.84010 1.59492 1.22242 1.42027 1.21334 1.38862 0.79835 1.06704 0.89049 1.25299 0.96371 1.00330 0.94609 1.70061 1.35061 1.36324 1.08166 0.85714 0.78996 0.80683 0.78007 1.19935 1.20312 1.19200 1.20036 1.05646 0.91966 1.03287 1.22700 0.99037 0.82895 0.89928 0.89152 1.21898 0.99974 1.01697 0.97511 0.92201 0.91747 0.92249 0.90353 0.89860 0.76690 0.87537 0.87071 0.85482 0.92084 0.85332 0.91743 0.91369 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.43 37.16 0.31 -0.59 16 2 C -0.12 -0.84 4.53 -89.69 -0.41 -1.25 16 3 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 4 C 0.10 0.77 7.99 -2.97 -0.02 0.75 16 5 N -0.66 -8.32 3.35 -176.54 -0.59 -8.91 16 6 C 0.72 12.67 8.39 -86.93 -0.73 11.94 16 7 O -0.56 -12.59 14.24 5.28 0.08 -12.51 16 8 N -0.68 -11.04 5.34 -14.24 -0.08 -11.12 16 9 C 0.20 3.95 6.27 -83.72 -0.52 3.43 16 10 C -0.24 -4.31 9.96 -39.34 -0.39 -4.70 16 11 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 12 C -0.25 -5.65 9.13 -39.36 -0.36 -6.01 16 13 C 0.17 4.44 6.64 -39.13 -0.26 4.18 16 14 O -0.17 -5.33 9.76 0.04 0.00 -5.33 16 15 C -0.39 -11.42 9.44 30.88 0.29 -11.13 16 16 H 0.09 2.45 5.29 -52.49 -0.28 2.17 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -26.38 13.67 55.48 0.76 -25.62 16 19 Si 0.94 21.20 29.55 -169.99 -5.02 16.18 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C -0.19 -4.57 8.59 -39.21 -0.34 -4.91 16 24 C 0.16 1.61 4.82 -66.86 -0.32 1.28 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 C -0.15 -1.69 8.11 37.16 0.30 -1.39 16 27 H 0.06 0.53 7.80 -51.93 -0.40 0.13 16 28 H 0.06 0.41 7.49 -51.93 -0.39 0.02 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.40 4.84 8.44 -40.82 -0.34 4.50 16 33 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.13 2.87 5.71 -52.49 -0.30 2.57 16 36 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.13 3.39 6.45 -52.49 -0.34 3.05 16 38 H 0.06 0.80 7.32 -51.93 -0.38 0.42 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.54 8.04 -51.92 -0.42 0.12 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -36.06 334.83 -8.12 -44.18 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.37 Total: 6.98 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.94 Total: -8.89 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.09 Total: -45.65 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.08 Total: -17.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.06 -8.12 -44.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887662845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.068 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds