Wall clock time and date at job start Tue Mar 31 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 112.93978 * 2 1 4 4 C 1.53944 * 113.74365 * 228.41570 * 2 1 3 5 5 N 1.47583 * 86.11566 * 269.15180 * 4 2 1 6 6 C 1.34768 * 134.49709 * 155.36079 * 5 4 2 7 7 O 1.21598 * 120.00270 * 179.97438 * 6 5 4 8 8 N 1.34776 * 120.00264 * 359.97438 * 6 5 4 9 9 C 1.39938 * 120.00355 * 174.74282 * 8 6 5 10 10 C 1.38963 * 120.03339 * 146.43326 * 9 8 6 11 11 C 1.38162 * 120.06674 * 180.02562 * 10 9 8 12 12 C 1.38170 * 120.13445 * 359.97438 * 11 10 9 13 13 C 1.38906 * 120.07406 * 0.02562 * 12 11 10 14 14 O 1.35752 * 120.03255 * 179.97438 * 13 12 11 15 15 C 1.34829 * 117.00363 * 5.91286 * 14 13 12 16 16 H 1.08002 * 119.99548 * 5.40675 * 15 14 13 17 17 C 1.38645 * 120.00202 * 185.40603 * 15 14 13 18 18 N 1.31557 * 119.99983 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99921 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46838 * 90.00514 * 19 17 15 21 21 H 1.48504 * 109.47004 * 210.00106 * 19 17 15 22 22 H 1.48496 * 109.47504 * 330.00419 * 19 17 15 23 23 C 1.38701 * 120.03714 * 326.15924 * 9 8 6 24 24 C 1.47592 * 91.01237 * 335.35782 * 5 4 2 25 25 H 1.08995 * 113.77056 * 270.34343 * 24 5 4 26 26 C 1.52999 * 113.76585 * 138.94096 * 24 5 4 27 27 H 1.09004 * 109.46825 * 170.32952 * 1 2 3 28 28 H 1.09003 * 109.47171 * 290.32765 * 1 2 3 29 29 H 1.09000 * 109.47527 * 50.33156 * 1 2 3 30 30 H 1.08996 * 113.76880 * 23.44710 * 4 2 1 31 31 H 1.08998 * 113.77111 * 154.85377 * 4 2 1 32 32 H 0.97005 * 119.99465 * 354.74670 * 8 6 5 33 33 H 1.08004 * 119.96743 * 359.97438 * 10 9 8 34 34 H 1.08001 * 119.92966 * 179.97438 * 11 10 9 35 35 H 1.08000 * 119.95868 * 180.02562 * 12 11 10 36 36 H 0.97001 * 119.99964 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.06937 * 359.97438 * 23 9 8 38 38 H 1.08994 * 109.47454 * 323.50696 * 26 24 5 39 39 H 1.08998 * 109.46910 * 83.51007 * 26 24 5 40 40 H 1.09008 * 109.46815 * 203.50449 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9549 1.0038 0.0000 4 6 2.1499 -0.9353 -1.0540 5 7 2.1296 -1.9699 -0.0018 6 6 2.1016 -3.3173 -0.0024 7 8 2.0906 -3.9258 1.0503 8 7 2.0858 -3.9905 -1.1699 9 6 2.1678 -5.3875 -1.1733 10 6 1.4978 -6.1212 -2.1448 11 6 1.5779 -7.5005 -2.1485 12 6 2.3244 -8.1545 -1.1873 13 6 2.9964 -7.4268 -0.2135 14 8 3.7292 -8.0703 0.7309 15 6 3.8644 -9.4051 0.5965 16 1 3.4747 -9.9017 -0.2798 17 6 4.5035 -10.1400 1.5832 18 7 4.9777 -9.5350 2.6509 19 14 4.6901 -11.9893 1.3973 20 1 5.9640 -12.2903 0.6959 21 1 4.7029 -12.6230 2.7403 22 1 3.5519 -12.5249 0.6081 23 6 2.9226 -6.0410 -0.2105 24 6 2.1523 -0.9364 1.0516 25 1 3.1564 -0.6452 1.3598 26 6 1.2275 -1.2389 2.2322 27 1 -0.3633 -1.0131 -0.1726 28 1 -0.3634 0.3570 0.9637 29 1 -0.3634 0.6560 -0.7910 30 1 1.4891 -1.1499 -1.8938 31 1 3.1533 -0.6438 -1.3642 32 1 2.0176 -3.5066 -2.0079 33 1 0.9132 -5.6128 -2.8973 34 1 1.0559 -8.0685 -2.9044 35 1 2.3854 -9.2328 -1.1931 36 1 5.4246 -10.0492 3.3414 37 1 3.4481 -5.4728 0.5427 38 1 0.3189 -1.7187 1.8685 39 1 1.7353 -1.9043 2.9304 40 1 0.9693 -0.3089 2.7391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887662845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:44 Heat of formation + Delta-G solvation = -14.909919 kcal Electronic energy + Delta-G solvation = -22713.244291 eV Core-core repulsion = 19301.327355 eV Total energy + Delta-G solvation = -3411.916936 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96278 -40.82778 -39.66990 -38.03092 -35.53102 -34.27341 -32.61005 -31.10578 -30.98248 -29.93563 -27.70227 -27.24494 -24.57390 -23.87953 -23.07935 -21.88243 -20.01853 -19.93374 -19.03888 -18.70404 -17.50861 -17.10221 -16.75612 -16.26806 -16.16425 -15.82196 -15.59688 -15.42810 -15.26169 -14.74764 -14.41348 -14.28888 -13.97400 -13.59750 -13.24056 -13.05677 -12.95570 -12.80325 -12.75525 -12.66425 -12.46878 -12.38211 -12.12913 -12.05227 -11.42678 -11.37952 -11.30136 -10.88219 -10.76217 -9.78453 -9.29419 -8.83712 -8.47082 -6.17182 0.45419 0.69894 1.32869 1.35794 1.44938 1.53321 2.07839 2.17588 2.75757 2.83481 3.17574 3.35051 3.52036 3.89604 4.02098 4.13227 4.21642 4.32712 4.37974 4.42371 4.43231 4.53884 4.62257 4.69581 4.72783 4.85434 4.89945 4.98664 5.03890 5.07148 5.11198 5.23432 5.27771 5.42490 5.48025 5.50769 5.62611 5.73642 6.02492 6.18294 6.22504 6.92976 6.96323 7.49640 7.79540 8.77136 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026361 B = 0.003484 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.937687 B = 8034.065086 C = 8818.006644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 H 0.130 0.870 4 C 0.099 3.901 5 N -0.663 5.663 6 C 0.711 3.289 7 O -0.621 6.621 8 N -0.666 5.666 9 C 0.205 3.795 10 C -0.207 4.207 11 C -0.045 4.045 12 C -0.256 4.256 13 C 0.129 3.871 14 O -0.237 6.237 15 C -0.414 4.414 16 H 0.107 0.893 17 C -0.029 4.029 18 N -0.926 5.926 19 Si 1.026 2.974 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.248 1.248 23 C -0.215 4.215 24 C 0.139 3.861 25 H 0.099 0.901 26 C -0.148 4.148 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.423 0.577 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.125 0.875 36 H 0.272 0.728 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.029 0.971 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 20.592 -12.860 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.148 0.852 4 C -0.022 4.022 5 N -0.403 5.403 6 C 0.414 3.586 7 O -0.501 6.501 8 N -0.315 5.315 9 C 0.110 3.890 10 C -0.228 4.228 11 C -0.063 4.063 12 C -0.276 4.276 13 C 0.078 3.922 14 O -0.144 6.144 15 C -0.490 4.490 16 H 0.125 0.875 17 C -0.226 4.226 18 N -0.564 5.564 19 Si 0.844 3.156 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.171 1.171 23 C -0.237 4.237 24 C 0.036 3.964 25 H 0.117 0.883 26 C -0.206 4.206 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.261 0.739 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.143 0.857 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.936 20.081 -11.710 24.904 hybrid contribution 0.560 -0.936 0.464 1.185 sum -8.376 19.145 -11.246 23.731 Atomic orbital electron populations 1.21589 0.92852 1.01322 1.03235 1.22990 0.96942 0.99014 0.92760 0.85177 1.23646 1.02571 0.83237 0.92722 1.49586 1.76602 1.00688 1.13386 1.15862 0.77663 0.81466 0.83598 1.90996 1.58658 1.67912 1.32509 1.42253 1.76762 1.04026 1.08488 1.17106 0.94367 0.81956 0.95602 1.20845 1.05448 0.93779 1.02735 1.21040 0.95028 0.93968 0.96266 1.21314 1.05977 1.00655 0.99685 1.19642 0.90874 0.92131 0.89565 1.83972 1.62532 1.23140 1.44738 1.21931 1.39405 0.79960 1.07723 0.87537 1.26763 0.95530 1.06442 0.93821 1.70239 1.37488 1.38901 1.09811 0.84502 0.79886 0.72764 0.78442 1.18547 1.19751 1.17142 1.20023 1.07683 0.91548 1.04488 1.23131 0.99807 0.83172 0.90257 0.88293 1.21849 0.98951 1.02216 0.97574 0.94743 0.91476 0.89881 0.88243 0.87680 0.73851 0.81950 0.81953 0.85736 0.91898 0.89163 0.93567 0.95171 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.43 71.98 0.61 -0.77 16 2 C -0.10 -0.97 4.53 -10.13 -0.05 -1.01 16 3 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 4 C 0.10 1.15 7.99 86.48 0.69 1.84 16 5 N -0.66 -16.04 3.35 -830.71 -2.78 -18.82 16 6 C 0.71 25.45 8.39 179.06 1.50 26.96 16 7 O -0.62 -30.36 14.24 -4.02 -0.06 -30.42 16 8 N -0.67 -20.73 5.34 -317.23 -1.69 -22.43 16 9 C 0.21 8.06 6.27 38.13 0.24 8.30 16 10 C -0.21 -6.61 9.96 22.43 0.22 -6.39 16 11 C -0.04 -1.53 10.03 22.24 0.22 -1.31 16 12 C -0.26 -11.78 9.13 22.41 0.20 -11.57 16 13 C 0.13 7.20 6.64 22.56 0.15 7.35 16 14 O -0.24 -15.78 9.76 -22.76 -0.22 -16.00 16 15 C -0.41 -25.70 9.44 67.92 0.64 -25.06 16 16 H 0.11 5.94 5.29 -2.91 -0.02 5.93 16 17 C -0.03 -1.74 5.49 84.83 0.47 -1.28 16 18 N -0.93 -60.81 13.67 21.61 0.30 -60.51 16 19 Si 1.03 44.89 29.55 68.60 2.03 46.92 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 23 C -0.22 -11.18 8.59 22.51 0.19 -10.98 16 24 C 0.14 2.68 4.82 45.09 0.22 2.89 16 25 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 26 C -0.15 -3.37 8.11 71.98 0.58 -2.79 16 27 H 0.03 0.54 7.80 -2.38 -0.02 0.52 16 28 H 0.07 0.68 7.49 -2.39 -0.02 0.66 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.78 8.10 -2.39 -0.02 0.77 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.42 8.77 8.44 -92.70 -0.78 7.98 16 33 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 34 H 0.16 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.12 5.68 5.71 -2.91 -0.02 5.66 16 36 H 0.27 16.29 8.31 -92.71 -0.77 15.52 16 37 H 0.09 5.31 6.45 -2.91 -0.02 5.29 16 38 H 0.05 1.20 7.32 -2.39 -0.02 1.18 16 39 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 1.52 8.04 -2.38 -0.02 1.50 16 Total: -1.00 -92.00 334.83 3.74 -88.25 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.28 Total: 26.83 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 5.90 Total: -13.82 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -4.18 Total: -101.76 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.28 Total: -46.42 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -92.00 3.74 -88.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887662845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.345 kcal (2) G-P(sol) polarization free energy of solvation -91.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds