Wall clock time and date at job start Tue Mar 31 2020 06:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 113.28593 * 2 1 4 4 C 1.53759 * 114.26762 * 133.41480 * 2 1 3 5 5 N 1.47059 * 87.88793 * 139.78936 * 4 2 1 6 6 C 1.34782 * 136.05547 * 152.96959 * 5 4 2 7 7 O 1.21586 * 120.00321 * 179.62843 * 6 5 4 8 8 N 1.34776 * 119.99946 * 359.62114 * 6 5 4 9 9 C 1.39945 * 120.00017 * 175.50373 * 8 6 5 10 10 C 1.38956 * 120.03350 * 215.14568 * 9 8 6 11 11 C 1.38159 * 120.06676 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.13673 * 359.78643 * 11 10 9 13 13 C 1.38900 * 120.06918 * 0.47102 * 12 11 10 14 14 O 1.35751 * 120.03577 * 179.78596 * 13 12 11 15 15 C 1.34839 * 116.99881 * 354.34785 * 14 13 12 16 16 H 1.07999 * 119.99600 * 5.02543 * 15 14 13 17 17 C 1.38646 * 119.99937 * 185.02477 * 15 14 13 18 18 N 1.31558 * 120.00486 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46832 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47389 * 119.99395 * 19 17 15 22 22 H 1.48493 * 109.47072 * 240.00010 * 19 17 15 23 23 C 1.38699 * 120.03566 * 35.12888 * 9 8 6 24 24 C 1.47061 * 87.88992 * 332.70536 * 5 4 2 25 25 H 1.08993 * 113.46933 * 142.18397 * 24 5 4 26 26 C 1.53002 * 113.46865 * 272.56544 * 24 5 4 27 27 H 1.09002 * 109.47446 * 193.06389 * 1 2 3 28 28 H 1.09004 * 109.47241 * 313.06546 * 1 2 3 29 29 H 1.09000 * 109.47101 * 73.06190 * 1 2 3 30 30 H 1.09000 * 113.46306 * 25.05264 * 4 2 1 31 31 H 1.09002 * 113.55109 * 254.54004 * 4 2 1 32 32 H 0.97008 * 119.99974 * 355.49713 * 8 6 5 33 33 H 1.07997 * 119.96968 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.93297 * 180.02562 * 11 10 9 35 35 H 1.08006 * 119.96162 * 180.25580 * 12 11 10 36 36 H 0.96995 * 120.00605 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.07074 * 0.04051 * 23 9 8 38 38 H 1.09003 * 109.47079 * 40.49354 * 26 24 5 39 39 H 1.08999 * 109.47237 * 160.48879 * 26 24 5 40 40 H 1.09001 * 109.46958 * 280.49750 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9608 1.0012 0.0000 4 6 2.1619 -0.9634 1.0182 5 7 3.1627 -1.3016 -0.0048 6 6 4.4369 -1.7409 -0.0080 7 8 5.0093 -1.9384 -1.0624 8 7 5.0767 -1.9611 1.1576 9 6 6.3657 -2.5060 1.1562 10 6 6.7530 -3.3787 2.1659 11 6 8.0252 -3.9174 2.1649 12 6 8.9147 -3.5941 1.1583 13 6 8.5354 -2.7182 0.1492 14 8 9.4113 -2.3976 -0.8371 15 6 10.6686 -2.8694 -0.7164 16 1 10.9186 -3.5390 0.0933 17 6 11.6405 -2.4949 -1.6315 18 7 11.3359 -1.6796 -2.6181 19 14 13.3822 -3.1490 -1.4647 20 1 13.4644 -4.0417 -0.2806 21 1 13.7437 -3.9120 -2.6863 22 1 14.3233 -2.0132 -1.2938 23 6 7.2579 -2.1759 0.1469 24 6 2.1593 -0.9560 -1.0229 25 1 2.5791 -0.4487 -1.8915 26 6 1.2496 -2.1258 -1.4036 27 1 -0.3634 -1.0011 0.2323 28 1 -0.3634 0.7017 0.7508 29 1 -0.3633 0.2994 -0.9831 30 1 1.5145 -1.7987 1.2850 31 1 2.5837 -0.4614 1.8890 32 1 4.6437 -1.7418 1.9975 33 1 6.0588 -3.6360 2.9522 34 1 8.3238 -4.5957 2.9504 35 1 9.9072 -4.0201 1.1580 36 1 12.0158 -1.4172 -3.2581 37 1 6.9594 -1.4976 -0.6387 38 1 0.9856 -2.6873 -0.5074 39 1 0.3432 -1.7434 -1.8729 40 1 1.7721 -2.7801 -2.1015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887662847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:49 Heat of formation + Delta-G solvation = 16.077160 kcal Electronic energy + Delta-G solvation = -22512.202182 eV Core-core repulsion = 19101.628947 eV Total energy + Delta-G solvation = -3410.573235 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99043 -39.41201 -38.22041 -36.33359 -33.97459 -32.20153 -31.95999 -29.87799 -29.37345 -28.39562 -26.50578 -25.21182 -24.42517 -22.32733 -21.38023 -20.50970 -18.89909 -18.16954 -17.74251 -16.99662 -16.37273 -15.82402 -15.21519 -14.98536 -14.90053 -14.52363 -14.14665 -13.78962 -13.58304 -13.41635 -13.12042 -12.81382 -12.64135 -12.45247 -12.43898 -12.07021 -11.77606 -11.68337 -11.51472 -11.36778 -11.12331 -10.97338 -10.71917 -10.42052 -10.39945 -9.82998 -9.68587 -9.15247 -8.77769 -8.74327 -7.59368 -7.11061 -6.36277 -3.95371 2.14483 2.41605 2.45025 3.17167 3.18441 3.24486 3.39924 3.82528 3.96404 4.05839 4.59556 4.62199 4.68999 4.93827 4.97764 4.99013 5.15735 5.18532 5.24279 5.36687 5.43903 5.48405 5.61977 5.68371 5.73315 5.77472 5.82759 5.90153 6.09617 6.16697 6.30548 6.47950 6.71846 6.96287 7.10474 7.16043 7.41059 7.41919 7.55945 7.89235 8.08270 8.12125 8.76098 9.08650 9.81359 10.81878 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.003264 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.171156 B = 8576.504855 C = 9289.671963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 H 0.105 0.895 4 C 0.101 3.899 5 N -0.664 5.664 6 C 0.729 3.271 7 O -0.556 6.556 8 N -0.679 5.679 9 C 0.193 3.807 10 C -0.237 4.237 11 C -0.058 4.058 12 C -0.247 4.247 13 C 0.168 3.832 14 O -0.175 6.175 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.187 4.187 24 C 0.152 3.848 25 H 0.087 0.913 26 C -0.156 4.156 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.400 0.600 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.269 0.731 37 H 0.135 0.865 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.733 1.818 9.108 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 H 0.123 0.877 4 C -0.023 4.023 5 N -0.404 5.404 6 C 0.433 3.567 7 O -0.431 6.431 8 N -0.325 5.325 9 C 0.099 3.901 10 C -0.258 4.258 11 C -0.077 4.077 12 C -0.267 4.267 13 C 0.113 3.887 14 O -0.078 6.078 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.208 4.208 24 C 0.048 3.952 25 H 0.105 0.895 26 C -0.215 4.215 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.234 0.766 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.145 0.855 36 H 0.079 0.921 37 H 0.153 0.847 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.982 1.828 7.878 21.557 hybrid contribution 0.688 -0.370 0.632 1.005 sum -19.294 1.458 8.510 21.137 Atomic orbital electron populations 1.21678 0.93357 1.02339 1.02394 1.23048 0.96172 0.98613 0.96515 0.87718 1.23129 0.88981 0.96807 0.93359 1.48807 1.09135 1.71246 1.11231 1.15301 0.79408 0.77620 0.84376 1.91022 1.65046 1.56765 1.30264 1.42394 1.16046 1.66611 1.07473 1.16966 0.81957 0.94582 0.96605 1.20227 0.98295 1.04925 1.02397 1.20473 0.92616 0.97592 0.97040 1.21168 1.01745 1.05554 0.98223 1.19136 0.90060 0.91800 0.87674 1.84002 1.19858 1.65678 1.38219 1.21397 0.82863 1.28277 1.14149 0.88956 1.25303 0.99665 0.96439 0.95229 1.70068 1.34359 1.31658 1.13531 0.85643 0.80573 0.78567 0.78583 1.19103 1.20195 1.20203 1.20217 0.91460 1.06686 1.02467 1.22340 0.85609 0.93841 0.93441 0.89453 1.22028 0.99333 0.97961 1.02152 0.91995 0.92078 0.91785 0.89959 0.90791 0.76589 0.87530 0.87058 0.85470 0.92131 0.84725 0.92083 0.90731 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 8.63 37.15 0.32 -0.33 16 2 C -0.12 -0.87 4.68 -89.97 -0.42 -1.29 16 3 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 4 C 0.10 0.79 7.51 -8.37 -0.06 0.73 16 5 N -0.66 -8.53 3.49 -183.00 -0.64 -9.17 16 6 C 0.73 13.02 8.64 -86.91 -0.75 12.27 16 7 O -0.56 -12.88 14.56 5.29 0.08 -12.80 16 8 N -0.68 -11.10 5.34 -14.24 -0.08 -11.17 16 9 C 0.19 3.87 6.30 -83.72 -0.53 3.34 16 10 C -0.24 -4.29 9.96 -39.34 -0.39 -4.68 16 11 C -0.06 -1.11 10.03 -39.64 -0.40 -1.51 16 12 C -0.25 -5.65 9.16 -39.36 -0.36 -6.01 16 13 C 0.17 4.41 6.64 -39.14 -0.26 4.15 16 14 O -0.17 -5.34 9.76 0.02 0.00 -5.34 16 15 C -0.39 -11.41 9.49 30.88 0.29 -11.12 16 16 H 0.09 2.48 5.20 -52.49 -0.27 2.21 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -26.38 13.67 55.48 0.76 -25.62 16 19 Si 0.94 21.22 29.55 -169.99 -5.02 16.20 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.19 -4.57 8.64 -39.21 -0.34 -4.91 16 24 C 0.15 1.56 4.88 -72.39 -0.35 1.21 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 26 C -0.16 -1.34 8.58 37.16 0.32 -1.02 16 27 H 0.06 0.26 7.10 -51.93 -0.37 -0.10 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.08 0.53 7.08 -51.93 -0.37 0.17 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.40 4.89 8.54 -40.82 -0.35 4.54 16 33 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.13 2.87 5.63 -52.48 -0.30 2.58 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.14 3.58 6.23 -52.49 -0.33 3.26 16 38 H 0.06 0.48 6.86 -51.93 -0.36 0.13 16 39 H 0.07 0.46 7.49 -51.93 -0.39 0.07 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -36.24 333.67 -8.14 -44.38 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.24 Total: 6.68 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -3.03 Total: -8.18 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.04 Total: -45.96 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.08 Total: -18.14 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.24 -8.14 -44.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887662847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.460 kcal (2) G-P(sol) polarization free energy of solvation -36.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds