Wall clock time and date at job start Tue Mar 31 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 113.28593 * 2 1 4 4 C 1.53759 * 114.26762 * 133.41480 * 2 1 3 5 5 N 1.47059 * 87.88793 * 139.78936 * 4 2 1 6 6 C 1.34782 * 136.05547 * 152.96959 * 5 4 2 7 7 O 1.21586 * 120.00321 * 179.62843 * 6 5 4 8 8 N 1.34776 * 119.99946 * 359.62114 * 6 5 4 9 9 C 1.39945 * 120.00017 * 175.50373 * 8 6 5 10 10 C 1.38956 * 120.03350 * 215.14568 * 9 8 6 11 11 C 1.38159 * 120.06676 * 179.97438 * 10 9 8 12 12 C 1.38169 * 120.13673 * 359.78643 * 11 10 9 13 13 C 1.38900 * 120.06918 * 0.47102 * 12 11 10 14 14 O 1.35751 * 120.03577 * 179.78596 * 13 12 11 15 15 C 1.34839 * 116.99881 * 354.34785 * 14 13 12 16 16 H 1.07999 * 119.99600 * 5.02543 * 15 14 13 17 17 C 1.38646 * 119.99937 * 185.02477 * 15 14 13 18 18 N 1.31558 * 120.00486 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00059 * 180.02562 * 17 15 14 20 20 H 1.48510 * 109.46832 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47389 * 119.99395 * 19 17 15 22 22 H 1.48493 * 109.47072 * 240.00010 * 19 17 15 23 23 C 1.38699 * 120.03566 * 35.12888 * 9 8 6 24 24 C 1.47061 * 87.88992 * 332.70536 * 5 4 2 25 25 H 1.08993 * 113.46933 * 142.18397 * 24 5 4 26 26 C 1.53002 * 113.46865 * 272.56544 * 24 5 4 27 27 H 1.09002 * 109.47446 * 193.06389 * 1 2 3 28 28 H 1.09004 * 109.47241 * 313.06546 * 1 2 3 29 29 H 1.09000 * 109.47101 * 73.06190 * 1 2 3 30 30 H 1.09000 * 113.46306 * 25.05264 * 4 2 1 31 31 H 1.09002 * 113.55109 * 254.54004 * 4 2 1 32 32 H 0.97008 * 119.99974 * 355.49713 * 8 6 5 33 33 H 1.07997 * 119.96968 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.93297 * 180.02562 * 11 10 9 35 35 H 1.08006 * 119.96162 * 180.25580 * 12 11 10 36 36 H 0.96995 * 120.00605 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.07074 * 0.04051 * 23 9 8 38 38 H 1.09003 * 109.47079 * 40.49354 * 26 24 5 39 39 H 1.08999 * 109.47237 * 160.48879 * 26 24 5 40 40 H 1.09001 * 109.46958 * 280.49750 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9608 1.0012 0.0000 4 6 2.1619 -0.9634 1.0182 5 7 3.1627 -1.3016 -0.0048 6 6 4.4369 -1.7409 -0.0080 7 8 5.0093 -1.9384 -1.0624 8 7 5.0767 -1.9611 1.1576 9 6 6.3657 -2.5060 1.1562 10 6 6.7530 -3.3787 2.1659 11 6 8.0252 -3.9174 2.1649 12 6 8.9147 -3.5941 1.1583 13 6 8.5354 -2.7182 0.1492 14 8 9.4113 -2.3976 -0.8371 15 6 10.6686 -2.8694 -0.7164 16 1 10.9186 -3.5390 0.0933 17 6 11.6405 -2.4949 -1.6315 18 7 11.3359 -1.6796 -2.6181 19 14 13.3822 -3.1490 -1.4647 20 1 13.4644 -4.0417 -0.2806 21 1 13.7437 -3.9120 -2.6863 22 1 14.3233 -2.0132 -1.2938 23 6 7.2579 -2.1759 0.1469 24 6 2.1593 -0.9560 -1.0229 25 1 2.5791 -0.4487 -1.8915 26 6 1.2496 -2.1258 -1.4036 27 1 -0.3634 -1.0011 0.2323 28 1 -0.3634 0.7017 0.7508 29 1 -0.3633 0.2994 -0.9831 30 1 1.5145 -1.7987 1.2850 31 1 2.5837 -0.4614 1.8890 32 1 4.6437 -1.7418 1.9975 33 1 6.0588 -3.6360 2.9522 34 1 8.3238 -4.5957 2.9504 35 1 9.9072 -4.0201 1.1580 36 1 12.0158 -1.4172 -3.2581 37 1 6.9594 -1.4976 -0.6387 38 1 0.9856 -2.6873 -0.5074 39 1 0.3432 -1.7434 -1.8729 40 1 1.7721 -2.7801 -2.1015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887662847.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:48 Heat of formation + Delta-G solvation = -10.018750 kcal Electronic energy + Delta-G solvation = -22513.333786 eV Core-core repulsion = 19101.628947 eV Total energy + Delta-G solvation = -3411.704839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.07523 -40.92061 -39.83432 -38.08738 -35.56129 -34.27330 -32.91496 -31.12130 -30.56855 -29.92403 -27.54886 -27.16890 -25.21449 -23.86588 -23.06957 -21.80321 -20.09410 -19.90679 -19.04367 -18.57128 -17.55018 -17.08108 -16.75316 -16.51480 -16.22960 -16.01377 -15.68699 -15.50416 -15.20936 -14.56845 -14.28345 -14.24413 -13.79807 -13.60042 -13.36061 -13.21557 -13.00018 -12.93121 -12.76179 -12.69713 -12.48855 -12.34500 -12.08890 -12.01473 -11.48664 -11.35846 -11.11771 -10.93481 -10.78158 -9.85257 -9.31346 -8.85813 -8.47080 -6.17124 0.45053 0.69637 1.27141 1.34108 1.43804 1.54250 1.99813 2.17538 2.75535 2.83292 3.16147 3.25465 3.52786 3.91332 3.99116 4.14078 4.18532 4.21542 4.36089 4.41258 4.46863 4.55375 4.60255 4.69392 4.74155 4.87325 4.91071 4.97969 5.05269 5.08632 5.11445 5.21961 5.29423 5.42284 5.46682 5.55342 5.62711 5.73326 6.03046 6.15915 6.21416 6.88749 6.96317 7.43201 7.79764 8.77369 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.003264 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.171156 B = 8576.504855 C = 9289.671963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 H 0.102 0.898 4 C 0.101 3.899 5 N -0.667 5.667 6 C 0.719 3.281 7 O -0.625 6.625 8 N -0.663 5.663 9 C 0.200 3.800 10 C -0.204 4.204 11 C -0.045 4.045 12 C -0.255 4.255 13 C 0.128 3.872 14 O -0.238 6.238 15 C -0.414 4.414 16 H 0.108 0.892 17 C -0.030 4.030 18 N -0.926 5.926 19 Si 1.026 2.974 20 H -0.245 1.245 21 H -0.270 1.270 22 H -0.267 1.267 23 C -0.216 4.216 24 C 0.133 3.867 25 H 0.059 0.941 26 C -0.149 4.149 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.424 0.576 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.126 0.874 36 H 0.272 0.728 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.184 0.405 13.427 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.123 4.123 3 H 0.120 0.880 4 C -0.020 4.020 5 N -0.406 5.406 6 C 0.422 3.578 7 O -0.504 6.504 8 N -0.312 5.312 9 C 0.105 3.895 10 C -0.225 4.225 11 C -0.064 4.064 12 C -0.275 4.275 13 C 0.077 3.923 14 O -0.144 6.144 15 C -0.489 4.489 16 H 0.125 0.875 17 C -0.226 4.226 18 N -0.565 5.565 19 Si 0.845 3.155 20 H -0.168 1.168 21 H -0.195 1.195 22 H -0.192 1.192 23 C -0.238 4.238 24 C 0.029 3.971 25 H 0.078 0.922 26 C -0.206 4.206 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.263 0.737 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.143 0.857 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -22.569 0.433 12.294 25.704 hybrid contribution 1.051 0.096 -0.541 1.186 sum -21.518 0.529 11.754 24.524 Atomic orbital electron populations 1.21678 0.90700 1.03559 1.03270 1.22957 0.97962 0.97472 0.93892 0.87980 1.23527 0.87496 0.97873 0.93110 1.48988 1.08157 1.68968 1.14458 1.15632 0.80907 0.77560 0.83679 1.90990 1.67192 1.59605 1.32657 1.42164 1.14602 1.66059 1.08328 1.17138 0.82584 0.94300 0.95512 1.20850 0.98618 1.01311 1.01703 1.21042 0.91884 0.97059 0.96384 1.21328 1.02734 1.04983 0.98479 1.19656 0.90239 0.93711 0.88711 1.83970 1.21062 1.68267 1.41122 1.21990 0.83096 1.28856 1.15004 0.87454 1.26768 1.04895 0.96527 0.94412 1.70243 1.36371 1.34512 1.15352 0.84435 0.73423 0.78283 0.79384 1.16846 1.19460 1.19239 1.20199 0.92349 1.07686 1.03614 1.22761 0.85437 0.95540 0.93315 0.92242 1.21989 0.99529 0.96849 1.02281 0.90849 0.90544 0.91373 0.87316 0.88793 0.73699 0.81828 0.81868 0.85674 0.91897 0.88672 0.90591 0.87853 0.94630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.72 8.63 71.98 0.62 -0.10 16 2 C -0.10 -1.19 4.68 -10.37 -0.05 -1.24 16 3 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.10 1.24 7.51 83.27 0.63 1.86 16 5 N -0.67 -16.68 3.49 -851.13 -2.97 -19.65 16 6 C 0.72 26.24 8.64 179.05 1.55 27.79 16 7 O -0.62 -31.28 14.56 -3.99 -0.06 -31.34 16 8 N -0.66 -20.76 5.34 -317.23 -1.69 -22.46 16 9 C 0.20 7.86 6.30 38.13 0.24 8.10 16 10 C -0.20 -6.45 9.96 22.42 0.22 -6.23 16 11 C -0.05 -1.54 10.03 22.23 0.22 -1.32 16 12 C -0.26 -11.69 9.16 22.41 0.21 -11.48 16 13 C 0.13 7.14 6.64 22.56 0.15 7.29 16 14 O -0.24 -15.83 9.76 -22.84 -0.22 -16.05 16 15 C -0.41 -25.66 9.49 67.92 0.64 -25.01 16 16 H 0.11 5.99 5.20 -2.91 -0.02 5.98 16 17 C -0.03 -1.78 5.49 84.83 0.47 -1.31 16 18 N -0.93 -60.85 13.67 21.61 0.30 -60.55 16 19 Si 1.03 44.94 29.55 68.60 2.03 46.97 16 20 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 C -0.22 -11.30 8.64 22.51 0.19 -11.11 16 24 C 0.13 2.68 4.88 41.79 0.20 2.89 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 C -0.15 -2.36 8.58 71.98 0.62 -1.74 16 27 H 0.07 0.27 7.10 -2.39 -0.02 0.25 16 28 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.07 0.36 8.09 -2.39 -0.02 0.34 16 30 H 0.11 0.86 7.08 -2.39 -0.02 0.84 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.42 8.83 8.54 -92.70 -0.79 8.04 16 33 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 35 H 0.13 5.68 5.63 -2.91 -0.02 5.66 16 36 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 37 H 0.10 5.67 6.23 -2.91 -0.02 5.65 16 38 H 0.08 0.98 6.86 -2.39 -0.02 0.96 16 39 H 0.10 1.03 7.49 -2.39 -0.02 1.01 16 40 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -92.24 333.67 3.56 -88.68 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.28 Total: 26.01 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 5.91 Total: -11.60 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -4.37 Total: -102.66 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -0.28 Total: -47.39 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -92.24 3.56 -88.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887662847.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.657 kcal (2) G-P(sol) polarization free energy of solvation -92.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds