Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 112.73964 * 2 1 4 4 C 1.53499 * 113.51921 * 229.20151 * 2 1 3 5 5 H 1.08996 * 114.20803 * 332.92869 * 4 2 1 6 6 C 1.52999 * 114.20561 * 105.56037 * 4 2 1 7 7 C 1.53755 * 83.25661 * 218.97643 * 4 2 1 8 8 N 1.47062 * 87.89105 * 26.23930 * 7 4 2 9 9 C 1.34771 * 136.06017 * 152.96108 * 8 7 4 10 10 O 1.21589 * 120.00252 * 179.63071 * 9 8 7 11 11 N 1.34778 * 120.00224 * 359.35835 * 9 8 7 12 12 C 1.39941 * 120.00395 * 175.02751 * 11 9 8 13 13 C 1.38959 * 120.03415 * 326.13176 * 12 11 9 14 14 C 1.38160 * 120.06642 * 179.79573 * 13 12 11 15 15 C 1.38170 * 120.13690 * 0.46111 * 14 13 12 16 16 C 1.38903 * 120.07146 * 359.79046 * 15 14 13 17 17 O 1.35746 * 120.03581 * 179.97438 * 16 15 14 18 18 C 1.34834 * 117.00200 * 185.89771 * 17 16 15 19 19 H 1.08003 * 119.99925 * 5.40682 * 18 17 16 20 20 C 1.38653 * 120.00035 * 185.39798 * 18 17 16 21 21 N 1.31562 * 119.99968 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00091 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47268 * 89.99639 * 22 20 18 24 24 H 1.48499 * 109.47285 * 209.99705 * 22 20 18 25 25 H 1.48501 * 109.47112 * 329.99633 * 22 20 18 26 26 C 1.38708 * 120.03472 * 146.41191 * 12 11 9 27 27 H 1.09006 * 109.47159 * 308.76491 * 1 2 3 28 28 H 1.08996 * 109.47408 * 68.76296 * 1 2 3 29 29 H 1.08997 * 109.47525 * 188.76474 * 1 2 3 30 30 H 1.09000 * 109.47585 * 59.99538 * 6 4 2 31 31 H 1.08999 * 109.47348 * 180.02562 * 6 4 2 32 32 H 1.09007 * 109.46906 * 299.99952 * 6 4 2 33 33 H 1.09006 * 113.46536 * 271.50130 * 7 4 2 34 34 H 1.09003 * 113.55302 * 140.99306 * 7 4 2 35 35 H 0.97009 * 119.99421 * 355.02440 * 11 9 8 36 36 H 1.08003 * 119.96684 * 0.02562 * 13 12 11 37 37 H 1.07995 * 119.92985 * 180.20967 * 14 13 12 38 38 H 1.07999 * 119.96506 * 179.77181 * 15 14 13 39 39 H 0.97001 * 119.99692 * 180.02562 * 21 20 18 40 40 H 1.07995 * 120.07299 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9513 1.0053 0.0000 4 6 2.1425 -0.9196 -1.0655 5 1 1.5092 -1.7607 -1.3475 6 6 2.7361 -0.1802 -2.2662 7 6 3.1589 -1.2290 0.0460 8 7 2.1156 -0.8805 1.0221 9 6 1.8267 -1.2157 2.2951 10 8 0.8580 -0.7303 2.8468 11 7 2.6085 -2.0932 2.9549 12 6 2.3710 -2.3626 4.3075 13 6 1.9003 -1.3582 5.1445 14 6 1.6616 -1.6245 6.4790 15 6 1.8990 -2.8870 6.9877 16 6 2.3745 -3.8939 6.1573 17 8 2.6080 -5.1339 6.6580 18 6 3.1829 -6.0299 5.8306 19 1 3.5155 -5.7234 4.8498 20 6 3.3474 -7.3447 6.2389 21 7 3.9089 -8.2188 5.4317 22 14 2.7719 -7.8749 7.9350 23 1 1.3624 -8.3362 7.8578 24 1 3.6295 -8.9839 8.4246 25 1 2.8660 -6.7260 8.8713 26 6 2.6108 -3.6309 4.8153 27 1 -0.3634 0.6435 0.8013 28 1 -0.3634 0.3722 -0.9578 29 1 -0.3634 -1.0156 0.1566 30 1 3.5279 0.4875 -1.9267 31 1 3.1470 -0.9029 -2.9711 32 1 1.9556 0.4018 -2.7566 33 1 4.0097 -0.5477 0.0580 34 1 3.4568 -2.2768 0.0845 35 1 3.3358 -2.5381 2.4921 36 1 1.7173 -0.3693 4.7506 37 1 1.2926 -0.8431 7.1267 38 1 1.7149 -3.0911 8.0321 39 1 4.0236 -9.1387 5.7173 40 1 2.9805 -4.4121 4.1678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887662848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = 12.700589 kcal Electronic energy + Delta-G solvation = -22561.094063 eV Core-core repulsion = 19150.374409 eV Total energy + Delta-G solvation = -3410.719654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93864 -39.47013 -38.34825 -36.40681 -34.18975 -32.35889 -31.84250 -30.52649 -29.35342 -28.69348 -26.59110 -25.17212 -23.56279 -22.07298 -21.73140 -20.75505 -19.46010 -18.12668 -17.74301 -17.39853 -16.09281 -15.70421 -15.20602 -15.16365 -14.64312 -14.44597 -14.31066 -13.85227 -13.76545 -13.54217 -13.34287 -13.06800 -12.80506 -12.31017 -12.15736 -12.05982 -11.90616 -11.85732 -11.68009 -11.54111 -11.15479 -10.90794 -10.75585 -10.46959 -10.26066 -9.93162 -9.61529 -9.47683 -8.85225 -8.80742 -7.74153 -7.23972 -6.41287 -4.08199 1.99360 2.30633 2.45037 3.22691 3.27226 3.31535 3.42176 3.82267 3.98238 4.25121 4.52266 4.60897 4.65735 4.89897 4.95276 5.00055 5.04712 5.09891 5.11948 5.26329 5.37539 5.45058 5.60730 5.67353 5.73310 5.75612 5.96007 5.98621 6.03125 6.16963 6.22706 6.25547 6.50520 6.90119 6.96978 7.22386 7.24599 7.37847 7.63731 7.79596 8.03810 8.05962 8.67956 8.94572 9.57525 10.66551 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022084 B = 0.003566 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.571174 B = 7849.727510 C = 8791.033709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 H 0.089 0.911 4 C -0.125 4.125 5 H 0.106 0.894 6 C -0.140 4.140 7 C 0.098 3.902 8 N -0.665 5.665 9 C 0.735 3.265 10 O -0.567 6.567 11 N -0.680 5.680 12 C 0.200 3.800 13 C -0.198 4.198 14 C -0.063 4.063 15 C -0.203 4.203 16 C 0.176 3.824 17 O -0.216 6.216 18 C -0.389 4.389 19 H 0.104 0.896 20 C 0.063 3.937 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.246 4.246 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.403 0.597 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.279 0.721 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 15.195 -13.369 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.107 0.893 4 C -0.145 4.145 5 H 0.124 0.876 6 C -0.198 4.198 7 C -0.025 4.025 8 N -0.405 5.405 9 C 0.439 3.561 10 O -0.443 6.443 11 N -0.326 5.326 12 C 0.106 3.894 13 C -0.219 4.219 14 C -0.082 4.082 15 C -0.223 4.223 16 C 0.123 3.877 17 O -0.122 6.122 18 C -0.464 4.464 19 H 0.121 0.879 20 C -0.140 4.140 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.268 4.268 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.237 0.763 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.784 15.181 -12.558 19.783 hybrid contribution 0.325 -0.720 0.257 0.831 sum -1.459 14.461 -12.301 19.041 Atomic orbital electron populations 1.21919 0.93940 1.03296 1.02040 1.22577 0.95315 0.94264 0.82633 0.89294 1.23152 0.98035 0.99671 0.93602 0.87609 1.21652 1.00913 1.00269 0.96969 1.23131 0.92295 1.01719 0.85353 1.48809 1.31727 1.49230 1.10774 1.15192 0.82555 0.79805 0.78586 1.90939 1.29154 1.58125 1.66038 1.42547 1.34648 1.45338 1.10096 1.17200 0.98388 0.92893 0.80873 1.20626 1.09263 0.98802 0.93205 1.20517 0.97824 0.95430 0.94443 1.20226 1.10160 0.92371 0.99538 1.18782 0.92457 0.85727 0.90736 1.83615 1.70634 1.17575 1.40327 1.20720 1.37061 0.89183 0.99478 0.87868 1.24457 0.96015 0.94158 0.99355 1.69647 1.42071 1.04041 1.36226 0.86178 0.78783 0.78671 0.83272 1.19917 1.20829 1.18260 1.20893 1.13621 0.95559 0.96710 0.91531 0.91528 0.91948 0.92163 0.91846 0.91864 0.89782 0.90431 0.76284 0.86128 0.86465 0.86394 0.91108 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.25 37.16 0.34 -1.22 16 2 C 0.16 1.47 4.26 -72.40 -0.31 1.16 16 3 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 4 C -0.13 -0.88 4.27 -89.97 -0.38 -1.26 16 5 H 0.11 0.78 8.12 -51.93 -0.42 0.36 16 6 C -0.14 -0.67 9.79 37.16 0.36 -0.30 16 7 C 0.10 0.81 7.87 -8.38 -0.07 0.75 16 8 N -0.66 -8.21 3.56 -182.99 -0.65 -8.87 16 9 C 0.73 12.31 8.43 -86.92 -0.73 11.58 16 10 O -0.57 -11.42 14.27 5.29 0.08 -11.34 16 11 N -0.68 -11.38 5.34 -14.24 -0.08 -11.45 16 12 C 0.20 3.99 6.27 -83.71 -0.52 3.47 16 13 C -0.20 -3.88 8.65 -39.34 -0.34 -4.22 16 14 C -0.06 -1.18 10.03 -39.64 -0.40 -1.57 16 15 C -0.20 -4.19 9.99 -39.36 -0.39 -4.58 16 16 C 0.18 4.15 6.64 -39.13 -0.26 3.89 16 17 O -0.22 -5.76 8.58 0.05 0.00 -5.76 16 18 C -0.39 -10.96 9.90 30.89 0.31 -10.66 16 19 H 0.10 2.95 5.53 -52.48 -0.29 2.66 16 20 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 21 N -0.88 -25.39 13.96 55.48 0.77 -24.61 16 22 Si 0.91 21.79 28.62 -169.99 -4.86 16.92 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.26 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.25 -5.45 9.05 -39.21 -0.35 -5.81 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.26 7.89 -51.93 -0.41 -0.15 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.57 7.93 -51.93 -0.41 0.16 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.40 5.66 8.54 -40.82 -0.35 5.31 16 36 H 0.12 2.36 6.45 -52.48 -0.34 2.02 16 37 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 38 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 39 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.14 3.07 5.71 -52.49 -0.30 2.77 16 LS Contribution 337.09 15.07 5.08 5.08 Total: -1.00 -32.88 337.09 -7.96 -40.84 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.46 Total: 6.29 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -2.84 Total: -7.10 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.05 Total: -44.93 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: 0.08 Total: -17.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.86 Total: 16.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.88 -7.96 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887662848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.542 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds