Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 112.73964 * 2 1 4 4 C 1.53499 * 113.51921 * 229.20151 * 2 1 3 5 5 H 1.08996 * 114.20803 * 332.92869 * 4 2 1 6 6 C 1.52999 * 114.20561 * 105.56037 * 4 2 1 7 7 C 1.53755 * 83.25661 * 218.97643 * 4 2 1 8 8 N 1.47062 * 87.89105 * 26.23930 * 7 4 2 9 9 C 1.34771 * 136.06017 * 152.96108 * 8 7 4 10 10 O 1.21589 * 120.00252 * 179.63071 * 9 8 7 11 11 N 1.34778 * 120.00224 * 359.35835 * 9 8 7 12 12 C 1.39941 * 120.00395 * 175.02751 * 11 9 8 13 13 C 1.38959 * 120.03415 * 326.13176 * 12 11 9 14 14 C 1.38160 * 120.06642 * 179.79573 * 13 12 11 15 15 C 1.38170 * 120.13690 * 0.46111 * 14 13 12 16 16 C 1.38903 * 120.07146 * 359.79046 * 15 14 13 17 17 O 1.35746 * 120.03581 * 179.97438 * 16 15 14 18 18 C 1.34834 * 117.00200 * 185.89771 * 17 16 15 19 19 H 1.08003 * 119.99925 * 5.40682 * 18 17 16 20 20 C 1.38653 * 120.00035 * 185.39798 * 18 17 16 21 21 N 1.31562 * 119.99968 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00091 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47268 * 89.99639 * 22 20 18 24 24 H 1.48499 * 109.47285 * 209.99705 * 22 20 18 25 25 H 1.48501 * 109.47112 * 329.99633 * 22 20 18 26 26 C 1.38708 * 120.03472 * 146.41191 * 12 11 9 27 27 H 1.09006 * 109.47159 * 308.76491 * 1 2 3 28 28 H 1.08996 * 109.47408 * 68.76296 * 1 2 3 29 29 H 1.08997 * 109.47525 * 188.76474 * 1 2 3 30 30 H 1.09000 * 109.47585 * 59.99538 * 6 4 2 31 31 H 1.08999 * 109.47348 * 180.02562 * 6 4 2 32 32 H 1.09007 * 109.46906 * 299.99952 * 6 4 2 33 33 H 1.09006 * 113.46536 * 271.50130 * 7 4 2 34 34 H 1.09003 * 113.55302 * 140.99306 * 7 4 2 35 35 H 0.97009 * 119.99421 * 355.02440 * 11 9 8 36 36 H 1.08003 * 119.96684 * 0.02562 * 13 12 11 37 37 H 1.07995 * 119.92985 * 180.20967 * 14 13 12 38 38 H 1.07999 * 119.96506 * 179.77181 * 15 14 13 39 39 H 0.97001 * 119.99692 * 180.02562 * 21 20 18 40 40 H 1.07995 * 120.07299 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9513 1.0053 0.0000 4 6 2.1425 -0.9196 -1.0655 5 1 1.5092 -1.7607 -1.3475 6 6 2.7361 -0.1802 -2.2662 7 6 3.1589 -1.2290 0.0460 8 7 2.1156 -0.8805 1.0221 9 6 1.8267 -1.2157 2.2951 10 8 0.8580 -0.7303 2.8468 11 7 2.6085 -2.0932 2.9549 12 6 2.3710 -2.3626 4.3075 13 6 1.9003 -1.3582 5.1445 14 6 1.6616 -1.6245 6.4790 15 6 1.8990 -2.8870 6.9877 16 6 2.3745 -3.8939 6.1573 17 8 2.6080 -5.1339 6.6580 18 6 3.1829 -6.0299 5.8306 19 1 3.5155 -5.7234 4.8498 20 6 3.3474 -7.3447 6.2389 21 7 3.9089 -8.2188 5.4317 22 14 2.7719 -7.8749 7.9350 23 1 1.3624 -8.3362 7.8578 24 1 3.6295 -8.9839 8.4246 25 1 2.8660 -6.7260 8.8713 26 6 2.6108 -3.6309 4.8153 27 1 -0.3634 0.6435 0.8013 28 1 -0.3634 0.3722 -0.9578 29 1 -0.3634 -1.0156 0.1566 30 1 3.5279 0.4875 -1.9267 31 1 3.1470 -0.9029 -2.9711 32 1 1.9556 0.4018 -2.7566 33 1 4.0097 -0.5477 0.0580 34 1 3.4568 -2.2768 0.0845 35 1 3.3358 -2.5381 2.4921 36 1 1.7173 -0.3693 4.7506 37 1 1.2926 -0.8431 7.1267 38 1 1.7149 -3.0911 8.0321 39 1 4.0236 -9.1387 5.7173 40 1 2.9805 -4.4121 4.1678 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887662848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = -8.232040 kcal Electronic energy + Delta-G solvation = -22562.001770 eV Core-core repulsion = 19150.374409 eV Total energy + Delta-G solvation = -3411.627361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02228 -40.96207 -39.79418 -38.05035 -35.66944 -34.41509 -32.74137 -31.35331 -30.95341 -30.20439 -27.55637 -27.07644 -24.46326 -23.42391 -23.33845 -21.79591 -20.70199 -19.80224 -19.41432 -18.71144 -17.45740 -17.07957 -16.73837 -16.39744 -15.94962 -15.81940 -15.72299 -15.34862 -15.28316 -14.76089 -14.59227 -14.22810 -14.12401 -13.95023 -13.37655 -13.31195 -12.89213 -12.79506 -12.71192 -12.67091 -12.52169 -12.40381 -12.19357 -12.06583 -11.53035 -11.36292 -11.15235 -11.04136 -10.83225 -9.84804 -9.38845 -8.90663 -8.50389 -6.23136 0.39648 0.63349 1.29841 1.33553 1.36888 1.53504 1.99333 2.28849 2.73514 2.77387 3.07189 3.10989 3.28294 3.90034 3.96531 4.07786 4.20731 4.27169 4.29012 4.39941 4.40592 4.47540 4.58167 4.60936 4.68845 4.79498 4.88434 4.93875 5.03316 5.07450 5.20715 5.33477 5.34505 5.39522 5.48663 5.51978 5.61574 5.73513 5.89166 6.13238 6.20649 6.83988 6.85118 7.39151 7.56833 8.60936 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022084 B = 0.003566 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.571174 B = 7849.727510 C = 8791.033709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 H 0.108 0.892 4 C -0.106 4.106 5 H 0.101 0.899 6 C -0.134 4.134 7 C 0.093 3.907 8 N -0.669 5.669 9 C 0.728 3.272 10 O -0.608 6.608 11 N -0.677 5.677 12 C 0.201 3.799 13 C -0.193 4.193 14 C -0.050 4.050 15 C -0.203 4.203 16 C 0.143 3.857 17 O -0.238 6.238 18 C -0.400 4.400 19 H 0.081 0.919 20 C 0.012 3.988 21 N -0.921 5.921 22 Si 0.969 3.031 23 H -0.269 1.269 24 H -0.267 1.267 25 H -0.260 1.260 26 C -0.257 4.257 27 H 0.043 0.957 28 H 0.097 0.903 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.413 0.587 36 H 0.127 0.873 37 H 0.161 0.839 38 H 0.137 0.863 39 H 0.285 0.715 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.173 17.185 -13.953 22.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.044 3.956 3 H 0.126 0.874 4 C -0.125 4.125 5 H 0.120 0.880 6 C -0.192 4.192 7 C -0.028 4.028 8 N -0.408 5.408 9 C 0.432 3.568 10 O -0.487 6.487 11 N -0.324 5.324 12 C 0.106 3.894 13 C -0.214 4.214 14 C -0.068 4.068 15 C -0.222 4.222 16 C 0.093 3.907 17 O -0.145 6.145 18 C -0.476 4.476 19 H 0.099 0.901 20 C -0.186 4.186 21 N -0.562 5.562 22 Si 0.791 3.209 23 H -0.194 1.194 24 H -0.191 1.191 25 H -0.184 1.184 26 C -0.279 4.279 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.144 0.856 37 H 0.178 0.822 38 H 0.155 0.845 39 H 0.094 0.906 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.879 17.211 -13.225 21.786 hybrid contribution 0.322 -1.059 0.246 1.134 sum -1.557 16.152 -12.979 20.779 Atomic orbital electron populations 1.21888 0.94673 1.01369 1.02877 1.22974 0.94934 0.95375 0.82281 0.87389 1.23045 0.96921 0.98935 0.93644 0.88037 1.21638 1.01348 1.00414 0.95787 1.23489 0.92514 1.02691 0.84136 1.49011 1.33153 1.49118 1.09553 1.15374 0.82099 0.79551 0.79825 1.90892 1.30758 1.59494 1.67575 1.42479 1.35092 1.45658 1.09166 1.17263 0.97545 0.92081 0.82490 1.20900 1.08042 0.98780 0.93705 1.20969 0.95868 0.95522 0.94460 1.20534 1.09295 0.92217 1.00193 1.19312 0.93889 0.85508 0.91943 1.83559 1.72194 1.18515 1.40280 1.20686 1.37726 0.90076 0.99096 0.90110 1.25253 0.96209 0.94050 1.03115 1.69723 1.43694 1.04628 1.38108 0.85244 0.78645 0.78422 0.78610 1.19367 1.19136 1.18421 1.20838 1.14436 0.96200 0.96440 0.93764 0.88425 0.94345 0.91248 0.90989 0.90914 0.87452 0.90079 0.75030 0.85555 0.82187 0.84538 0.90563 0.86460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.25 71.98 0.67 -2.24 16 2 C 0.15 2.49 4.26 41.79 0.18 2.67 16 3 H 0.11 1.48 8.10 -2.39 -0.02 1.46 16 4 C -0.11 -1.22 4.27 -10.37 -0.04 -1.26 16 5 H 0.10 1.30 8.12 -2.39 -0.02 1.28 16 6 C -0.13 -0.79 9.79 71.98 0.70 -0.09 16 7 C 0.09 1.34 7.87 83.27 0.66 2.00 16 8 N -0.67 -15.78 3.56 -851.13 -3.03 -18.81 16 9 C 0.73 24.21 8.43 179.06 1.51 25.72 16 10 O -0.61 -24.54 14.27 -4.00 -0.06 -24.60 16 11 N -0.68 -22.72 5.34 -317.23 -1.70 -24.42 16 12 C 0.20 8.07 6.27 38.13 0.24 8.31 16 13 C -0.19 -7.33 8.65 22.42 0.19 -7.13 16 14 C -0.05 -1.73 10.03 22.23 0.22 -1.51 16 15 C -0.20 -8.11 9.99 22.41 0.22 -7.88 16 16 C 0.14 6.90 6.64 22.56 0.15 7.05 16 17 O -0.24 -13.01 8.58 -22.74 -0.20 -13.21 16 18 C -0.40 -23.49 9.90 67.92 0.67 -22.82 16 19 H 0.08 4.94 5.53 -2.91 -0.02 4.93 16 20 C 0.01 0.72 5.49 84.83 0.47 1.18 16 21 N -0.92 -54.56 13.96 21.61 0.30 -54.26 16 22 Si 0.97 45.38 28.62 68.60 1.96 47.35 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 26 C -0.26 -11.78 9.05 22.51 0.20 -11.58 16 27 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.32 7.89 -2.39 -0.02 0.31 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 0.34 8.14 -2.38 -0.02 0.33 16 33 H 0.11 1.11 7.93 -2.38 -0.02 1.09 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.41 11.72 8.54 -92.70 -0.79 10.93 16 36 H 0.13 4.74 6.45 -2.91 -0.02 4.72 16 37 H 0.16 4.21 8.06 -2.91 -0.02 4.18 16 38 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.12 5.72 5.71 -2.91 -0.02 5.70 16 Total: -1.00 -73.92 337.09 3.59 -70.32 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.27 Total: 25.22 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 6.04 Total: -7.59 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -4.43 Total: -97.49 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.25 Total: -37.81 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.96 Total: 47.35 kcal Total: -73.92 3.59 -70.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887662848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.093 kcal (2) G-P(sol) polarization free energy of solvation -73.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds