Wall clock time and date at job start Tue Mar 31 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.49177 * 2 1 4 4 C 1.53092 * 109.48384 * 120.03092 * 2 1 3 5 5 C 1.53174 * 109.16621 * 177.59016 * 4 2 1 6 6 H 1.09000 * 109.61987 * 183.10736 * 5 4 2 7 7 C 1.50700 * 109.54087 * 62.88818 * 5 4 2 8 8 O 1.21267 * 120.00235 * 351.53532 * 7 5 4 9 9 N 1.34781 * 119.99812 * 171.54429 * 7 5 4 10 10 C 1.37213 * 120.00154 * 4.65284 * 9 7 5 11 11 H 1.07998 * 119.99942 * 306.29927 * 10 9 7 12 12 C 1.38894 * 119.99863 * 126.29383 * 10 9 7 13 13 N 1.31412 * 120.00312 * 343.46877 * 12 10 9 14 14 Si 1.86801 * 119.99539 * 163.46237 * 12 10 9 15 15 H 1.48498 * 109.47398 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46827 * 120.00514 * 14 12 10 17 17 H 1.48498 * 109.46984 * 240.00294 * 14 12 10 18 18 C 1.39429 * 119.99826 * 184.65542 * 9 7 5 19 19 C 1.39063 * 119.69410 * 184.99773 * 18 9 7 20 20 C 1.38387 * 119.09477 * 179.74332 * 19 18 9 21 21 C 1.38822 * 118.49419 * 0.26052 * 20 19 18 22 22 C 1.38147 * 119.31035 * 359.97438 * 21 20 19 23 23 N 1.31878 * 120.85193 * 0.02562 * 22 21 20 24 24 C 1.53179 * 109.03630 * 303.02194 * 5 4 2 25 25 C 1.53083 * 109.16665 * 56.97834 * 24 5 4 26 26 O 1.42900 * 109.41607 * 302.39367 * 25 24 5 27 27 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47223 * 300.02869 * 1 2 3 29 29 H 1.09000 * 109.46965 * 60.03072 * 1 2 3 30 30 H 1.09005 * 109.51734 * 57.68505 * 4 2 1 31 31 H 1.09000 * 109.51772 * 297.49826 * 4 2 1 32 32 H 0.96996 * 119.99836 * 176.43985 * 13 12 10 33 33 H 1.07999 * 120.45389 * 0.02688 * 19 18 9 34 34 H 1.08003 * 120.75132 * 180.27478 * 20 19 18 35 35 H 1.08002 * 120.34245 * 179.97438 * 21 20 19 36 36 H 1.08004 * 119.57439 * 180.02562 * 22 21 20 37 37 H 1.08999 * 109.52012 * 176.88797 * 24 5 4 38 38 H 1.09005 * 109.51934 * 297.06948 * 24 5 4 39 39 H 1.09010 * 109.48211 * 62.37386 * 25 24 5 40 40 H 1.08999 * 109.48877 * 182.40622 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2121 6 1 3.9406 -1.3319 2.0705 7 6 4.1211 0.6316 1.2518 8 8 3.3721 1.5798 1.1499 9 7 5.4456 0.8320 1.4003 10 6 6.3037 -0.2386 1.4194 11 1 6.1363 -1.0524 2.1093 12 6 7.3874 -0.2756 0.5514 13 7 7.4213 0.5228 -0.4918 14 14 8.7967 -1.4603 0.8672 15 1 8.5184 -2.2441 2.0974 16 1 8.9349 -2.3841 -0.2873 17 1 10.0571 -0.6947 1.0421 18 6 5.9439 2.1273 1.5345 19 6 7.3181 2.3352 1.5825 20 6 7.7992 3.6264 1.7105 21 6 6.8857 4.6685 1.7919 22 6 5.5339 4.3883 1.7425 23 7 5.1045 3.1474 1.6200 24 6 4.0176 -1.4601 -0.0810 25 6 3.4307 -0.7093 -1.2791 26 8 2.0066 -0.6742 -1.1665 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5142 0.8897 29 1 -0.3633 0.5134 -0.8903 30 1 1.6443 -1.7375 1.2708 31 1 1.7149 -0.1843 2.1398 32 1 8.2009 0.5339 -1.0688 33 1 8.0006 1.5008 1.5162 34 1 8.8614 3.8190 1.7461 35 1 7.2284 5.6878 1.8928 36 1 4.8194 5.1959 1.8050 37 1 5.1059 -1.4498 -0.1422 38 1 3.6613 -2.4902 -0.0865 39 1 3.8193 0.3090 -1.2959 40 1 3.7100 -1.2202 -2.2006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892469873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:24 Heat of formation + Delta-G solvation = -44.301673 kcal Electronic energy + Delta-G solvation = -24649.805214 eV Core-core repulsion = 21236.613756 eV Total energy + Delta-G solvation = -3413.191458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90111 -40.57977 -38.88838 -36.93291 -34.52949 -34.00193 -33.55247 -32.75936 -30.83072 -28.73142 -27.15374 -25.94309 -24.19984 -23.88641 -23.12805 -22.06361 -20.68729 -19.38786 -17.77676 -17.47877 -17.16703 -16.91773 -16.73973 -16.38526 -16.03575 -15.89365 -15.50630 -15.22746 -14.80546 -14.63744 -14.30913 -13.78164 -13.58807 -13.47071 -13.23975 -13.15749 -13.07499 -13.03090 -12.76346 -12.64200 -12.35040 -12.04276 -11.91210 -11.57513 -11.37710 -11.09565 -10.70990 -10.58183 -10.47427 -10.20412 -9.56100 -8.80677 -8.23184 -6.36878 0.50433 0.70824 1.41683 1.48694 1.60102 2.05826 2.25550 2.65680 2.89611 2.92315 3.38979 3.77165 3.84715 3.95677 4.04540 4.11165 4.18518 4.34175 4.39461 4.52009 4.52969 4.62253 4.64690 4.73737 4.79097 4.83128 4.85696 5.00288 5.06491 5.13495 5.15607 5.27971 5.33890 5.37680 5.40820 5.43902 5.56681 5.90764 6.18957 6.34887 6.41661 7.01857 7.14387 7.55012 8.01994 8.65417 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014495 B = 0.007925 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.298903 B = 3532.232104 C = 4957.006589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.066 3.934 3 H 0.052 0.948 4 C -0.119 4.119 5 C -0.089 4.089 6 H 0.101 0.899 7 C 0.486 3.514 8 O -0.549 6.549 9 N -0.398 5.398 10 C -0.371 4.371 11 H 0.102 0.898 12 C 0.030 3.970 13 N -0.871 5.871 14 Si 0.968 3.032 15 H -0.254 1.254 16 H -0.276 1.276 17 H -0.274 1.274 18 C 0.345 3.655 19 C -0.179 4.179 20 C -0.076 4.076 21 C -0.219 4.219 22 C 0.092 3.908 23 N -0.533 5.533 24 C -0.133 4.133 25 C 0.073 3.927 26 O -0.394 6.394 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.274 0.726 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.005 0.995 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.775 -1.996 2.831 3.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.157 4.157 5 C -0.110 4.110 6 H 0.120 0.880 7 C 0.277 3.723 8 O -0.428 6.428 9 N -0.110 5.110 10 C -0.497 4.497 11 H 0.119 0.881 12 C -0.177 4.177 13 N -0.503 5.503 14 Si 0.791 3.209 15 H -0.177 1.177 16 H -0.202 1.202 17 H -0.199 1.199 18 C 0.116 3.884 19 C -0.203 4.203 20 C -0.102 4.102 21 C -0.240 4.240 22 C -0.067 4.067 23 N -0.250 5.250 24 C -0.171 4.171 25 C -0.004 4.004 26 O -0.314 6.314 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.024 0.976 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.162 -1.862 2.398 4.383 hybrid contribution 2.096 0.093 -0.002 2.098 sum -1.066 -1.770 2.395 3.163 Atomic orbital electron populations 1.21697 0.91310 1.03232 1.02609 1.22483 0.96177 0.95879 0.84604 0.92967 1.21982 0.92960 1.02094 0.98632 1.21151 0.96304 0.92532 1.00997 0.88048 1.21614 0.82560 0.92000 0.76145 1.90534 1.58052 1.45053 1.49120 1.41411 1.06003 1.03145 1.60433 1.19514 1.09422 0.99793 1.20995 0.88061 1.26186 1.01235 0.98019 0.92251 1.70187 1.29636 1.38622 1.11893 0.85266 0.77995 0.78524 0.79150 1.17698 1.20182 1.19945 1.19345 0.89797 0.86654 0.92609 1.21774 0.94812 0.98866 1.04841 1.21676 1.01060 0.91616 0.95815 1.22107 0.93656 1.00948 1.07301 1.22940 0.95433 0.92746 0.95557 1.67590 1.39710 1.00222 1.17449 1.22060 1.03223 0.99463 0.92309 1.22368 0.80640 0.97922 0.99452 1.87768 1.21058 1.78199 1.44351 0.90755 0.90178 0.92364 0.88595 0.91204 0.91578 0.85199 0.83024 0.82174 0.81703 0.89263 0.88771 0.97632 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.56 71.98 0.69 -3.05 16 2 C 0.07 2.45 2.98 30.62 0.09 2.54 16 3 H 0.05 2.41 5.51 -2.39 -0.01 2.39 16 4 C -0.12 -4.07 4.59 30.68 0.14 -3.93 16 5 C -0.09 -3.48 2.34 -11.42 -0.03 -3.51 16 6 H 0.10 3.68 7.57 -2.39 -0.02 3.66 16 7 C 0.49 23.82 5.69 87.66 0.50 24.32 16 8 O -0.55 -29.44 11.90 -2.99 -0.04 -29.47 16 9 N -0.40 -20.23 2.62 -464.38 -1.22 -21.45 16 10 C -0.37 -17.49 5.87 84.01 0.49 -16.99 16 11 H 0.10 4.51 7.39 -2.91 -0.02 4.49 16 12 C 0.03 1.38 2.81 84.91 0.24 1.62 16 13 N -0.87 -43.60 11.80 21.65 0.26 -43.34 16 14 Si 0.97 35.76 29.50 68.60 2.02 37.78 16 15 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 16 H -0.28 -10.16 7.11 99.48 0.71 -9.46 16 17 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 18 C 0.35 17.79 6.90 132.90 0.92 18.71 16 19 C -0.18 -8.30 7.99 22.50 0.18 -8.12 16 20 C -0.08 -2.85 10.17 22.45 0.23 -2.62 16 21 C -0.22 -7.57 10.11 22.39 0.23 -7.34 16 22 C 0.09 3.71 11.18 84.66 0.95 4.66 16 23 N -0.53 -26.98 7.92 -192.95 -1.53 -28.51 16 24 C -0.13 -5.02 5.48 30.68 0.17 -4.85 16 25 C 0.07 2.95 6.62 72.01 0.48 3.42 16 26 O -0.39 -15.38 10.41 -148.98 -1.55 -16.93 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 31 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 32 H 0.27 12.99 8.31 -92.71 -0.77 12.21 16 33 H 0.13 6.16 5.03 -2.91 -0.01 6.15 16 34 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 35 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.17 5.52 8.06 -2.91 -0.02 5.50 16 37 H 0.09 3.77 5.73 -2.39 -0.01 3.76 16 38 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 39 H 0.01 0.26 7.38 -2.38 -0.02 0.24 16 40 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 Total: -1.00 -64.32 315.83 4.26 -60.06 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 1.05 Total: 37.00 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.27 Total: 4.86 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -2.49 Total: -93.30 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -1.59 Total: -46.40 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.02 Total: 37.78 kcal Total: -64.32 4.26 -60.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892469873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.758 kcal (2) G-P(sol) polarization free energy of solvation -64.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds