Wall clock time and date at job start Tue Mar 31 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.57730 * 2 1 4 4 C 1.53090 * 109.52245 * 239.84259 * 2 1 3 5 5 O 1.42900 * 109.41736 * 297.70701 * 4 2 1 6 6 C 1.42906 * 114.09582 * 298.83704 * 5 4 2 7 7 C 1.53093 * 109.41122 * 61.16119 * 6 5 4 8 8 C 1.53182 * 109.16250 * 302.38537 * 7 6 5 9 9 H 1.08997 * 109.62043 * 297.07543 * 8 7 6 10 10 C 1.50704 * 109.54040 * 176.84876 * 8 7 6 11 11 O 1.21266 * 120.00092 * 327.33082 * 10 8 7 12 12 N 1.34776 * 119.99498 * 147.61227 * 10 8 7 13 13 C 1.37211 * 120.00240 * 6.00365 * 12 10 8 14 14 H 1.08000 * 119.99838 * 37.08983 * 13 12 10 15 15 C 1.38889 * 119.99809 * 217.08653 * 13 12 10 16 16 N 1.31416 * 120.00326 * 16.85968 * 15 13 12 17 17 Si 1.86808 * 119.99756 * 196.85754 * 15 13 12 18 18 H 1.48496 * 109.47091 * 60.00231 * 17 15 13 19 19 H 1.48499 * 109.46985 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46989 * 300.00131 * 17 15 13 21 21 C 1.39429 * 119.99543 * 186.00604 * 12 10 8 22 22 C 1.39062 * 119.70097 * 16.29663 * 21 12 10 23 23 C 1.38380 * 119.09924 * 179.72935 * 22 21 12 24 24 C 1.38822 * 118.49150 * 0.53017 * 23 22 21 25 25 C 1.38150 * 119.31183 * 359.72685 * 24 23 22 26 26 N 1.31879 * 120.85071 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46950 * 301.38178 * 1 2 3 28 28 H 1.09001 * 109.46764 * 61.37753 * 1 2 3 29 29 H 1.08996 * 109.46872 * 181.37967 * 1 2 3 30 30 H 1.09002 * 109.48105 * 57.69288 * 4 2 1 31 31 H 1.09001 * 109.48289 * 177.70762 * 4 2 1 32 32 H 1.09005 * 109.48036 * 181.14118 * 6 5 4 33 33 H 1.08998 * 109.48088 * 301.17550 * 6 5 4 34 34 H 1.09003 * 109.52122 * 182.48299 * 7 6 5 35 35 H 1.09002 * 109.52435 * 62.29593 * 7 6 5 36 36 H 0.96998 * 119.99713 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.44786 * 359.97293 * 22 21 12 38 38 H 1.08004 * 120.74775 * 180.25395 * 23 22 21 39 39 H 1.08000 * 120.34417 * 179.70980 * 24 23 22 40 40 H 1.08002 * 119.56889 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 1.6097 -2.0867 -1.2164 6 6 2.0970 -2.8277 -0.0958 7 6 1.5876 -2.1874 1.1981 8 6 2.0419 -0.7254 1.2483 9 1 3.1307 -0.6811 1.2749 10 6 1.4802 -0.0650 2.4810 11 8 0.3980 -0.4039 2.9107 12 7 2.1781 0.9061 3.1025 13 6 3.3396 1.3796 2.5463 14 1 3.4214 1.4848 1.4745 15 6 4.4101 1.7236 3.3616 16 7 4.4521 1.2997 4.6048 17 14 5.7903 2.7890 2.6909 18 1 5.2384 4.0961 2.2528 19 1 6.8052 3.0102 3.7521 20 1 6.4247 2.1069 1.5344 21 6 1.7197 1.4296 4.3108 22 6 0.7566 0.7400 5.0393 23 6 0.3147 1.2681 6.2396 24 6 0.8453 2.4780 6.6661 25 6 1.7955 3.1114 5.8886 26 7 2.2013 2.5815 4.7512 27 1 -0.3633 0.5351 0.8773 28 1 -0.3633 0.4923 -0.9021 29 1 -0.3633 -1.0273 0.0247 30 1 1.6454 -0.2382 -2.1389 31 1 3.1308 -0.6891 -1.2678 32 1 1.7407 -3.8561 -0.1573 33 1 3.1870 -2.8197 -0.1009 34 1 1.9940 -2.7247 2.0550 35 1 0.4988 -2.2316 1.2223 36 1 5.2000 1.5398 5.1740 37 1 0.3618 -0.1970 4.6752 38 1 -0.4294 0.7528 6.8290 39 1 0.5184 2.9196 7.5959 40 1 2.2107 4.0530 6.2163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:17 Heat of formation + Delta-G solvation = -28.963902 kcal Electronic energy + Delta-G solvation = -24419.243403 eV Core-core repulsion = 21006.717041 eV Total energy + Delta-G solvation = -3412.526362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35145 -39.12533 -37.66437 -35.02699 -33.87014 -31.82920 -31.48317 -31.17188 -29.35562 -26.76312 -25.52236 -25.09504 -22.91750 -22.38637 -22.03384 -19.89999 -18.61617 -17.81546 -16.60681 -15.96633 -15.68471 -15.38403 -15.22831 -14.92517 -14.72361 -14.52672 -14.15073 -13.54039 -13.28129 -13.13640 -12.75348 -12.57659 -12.23700 -12.03797 -11.65637 -11.62557 -11.38814 -11.36481 -11.08398 -10.91378 -10.88513 -10.75413 -10.46335 -10.08448 -9.87202 -9.47892 -9.35805 -9.02613 -8.58528 -8.40808 -8.11479 -7.11419 -6.41534 -4.21240 2.17691 2.41231 3.11779 3.20902 3.23521 3.63181 3.95157 4.10177 4.32951 4.89374 5.06069 5.12075 5.25066 5.30110 5.38340 5.46367 5.61839 5.67624 5.69013 5.80546 5.85647 5.96513 5.98714 6.02384 6.03692 6.16214 6.27621 6.32347 6.45587 6.48953 6.56196 6.60991 6.83502 6.85917 7.01796 7.23052 7.34069 7.41265 7.43621 7.87921 8.29169 8.81822 8.98509 9.50702 9.63568 10.61235 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.007146 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.422947 B = 3917.444955 C = 5169.152271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 H 0.085 0.915 4 C 0.069 3.931 5 O -0.384 6.384 6 C 0.063 3.937 7 C -0.140 4.140 8 C -0.086 4.086 9 H 0.102 0.898 10 C 0.494 3.506 11 O -0.567 6.567 12 N -0.370 5.370 13 C -0.370 4.370 14 H 0.095 0.905 15 C 0.082 3.918 16 N -0.833 5.833 17 Si 0.920 3.080 18 H -0.269 1.269 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.395 3.605 22 C -0.212 4.212 23 C -0.074 4.074 24 C -0.238 4.238 25 C 0.116 3.884 26 N -0.465 5.465 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.272 0.728 37 H 0.159 0.841 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 -2.571 -4.741 5.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.008 4.008 5 O -0.303 6.303 6 C -0.013 4.013 7 C -0.178 4.178 8 C -0.107 4.107 9 H 0.120 0.880 10 C 0.286 3.714 11 O -0.450 6.450 12 N -0.079 5.079 13 C -0.495 4.495 14 H 0.112 0.888 15 C -0.130 4.130 16 N -0.464 5.464 17 Si 0.746 3.254 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.166 3.834 22 C -0.235 4.235 23 C -0.100 4.100 24 C -0.260 4.260 25 C -0.044 4.044 26 N -0.179 5.179 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.176 0.824 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.365 -2.445 -5.081 6.114 hybrid contribution 0.586 0.499 0.865 1.158 sum -1.779 -1.946 -4.216 4.972 Atomic orbital electron populations 1.21783 0.94246 1.02511 1.01219 1.21633 0.97343 1.00284 0.94070 0.89708 1.22597 0.98362 0.82180 0.97616 1.87864 1.74359 1.22599 1.45457 1.22573 0.97947 0.95190 0.85615 1.22089 1.03068 0.94758 0.97846 1.21081 1.02552 0.94514 0.92591 0.87968 1.20466 0.85294 0.79325 0.86365 1.90400 1.22429 1.64747 1.67420 1.41164 1.20798 1.28702 1.17187 1.19184 0.89111 1.48166 0.93085 0.88770 1.25173 0.97751 0.95090 0.94987 1.69831 1.30948 1.38508 1.07148 0.86145 0.79835 0.81035 0.78385 1.19422 1.20960 1.19948 1.18442 0.88680 0.88519 0.87805 1.22596 1.01598 1.03509 0.95755 1.21198 0.98304 0.95269 0.95207 1.21668 1.03157 0.98934 1.02259 1.22213 0.93413 0.98250 0.90523 1.67104 1.25072 1.11082 1.14633 0.92096 0.93530 0.91917 0.89077 0.93028 0.89140 0.93248 0.91048 0.89877 0.91811 0.82365 0.86616 0.86944 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.28 37.16 0.31 -2.01 16 2 C -0.11 -1.87 2.72 -90.48 -0.25 -2.11 16 3 H 0.08 1.44 7.33 -51.93 -0.38 1.06 16 4 C 0.07 0.96 6.25 37.20 0.23 1.19 16 5 O -0.38 -5.68 10.21 -35.23 -0.36 -6.04 16 6 C 0.06 0.86 6.84 37.21 0.25 1.12 16 7 C -0.14 -2.27 4.75 -26.59 -0.13 -2.39 16 8 C -0.09 -1.60 1.63 -91.58 -0.15 -1.75 16 9 H 0.10 1.97 6.93 -51.93 -0.36 1.61 16 10 C 0.49 11.19 5.68 -10.98 -0.06 11.13 16 11 O -0.57 -13.36 11.72 5.57 0.07 -13.30 16 12 N -0.37 -9.28 2.77 -60.71 -0.17 -9.45 16 13 C -0.37 -9.22 7.85 -14.90 -0.12 -9.34 16 14 H 0.09 2.19 6.50 -52.49 -0.34 1.85 16 15 C 0.08 2.07 4.41 -17.49 -0.08 1.99 16 16 N -0.83 -22.32 11.40 55.49 0.63 -21.68 16 17 Si 0.92 19.73 29.58 -169.99 -5.03 14.70 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 C 0.39 10.12 6.07 -154.64 -0.94 9.18 16 22 C -0.21 -5.00 8.85 -39.22 -0.35 -5.35 16 23 C -0.07 -1.49 10.17 -39.31 -0.40 -1.89 16 24 C -0.24 -4.59 10.11 -39.40 -0.40 -4.99 16 25 C 0.12 2.49 11.18 -17.56 -0.20 2.29 16 26 N -0.47 -11.72 7.57 -12.34 -0.09 -11.81 16 27 H 0.06 1.16 6.59 -51.93 -0.34 0.81 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.04 6.11 -51.93 -0.32 0.72 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.43 6.20 -51.93 -0.32 1.11 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.16 3.81 5.20 -52.74 -0.27 3.53 16 38 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 39 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.14 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -29.40 315.57 -7.74 -37.14 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.28 Total: 8.61 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.26 Total: -2.93 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.37 Total: -42.94 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.29 Total: -19.34 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.40 -7.74 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.171 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds