Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.57730 * 2 1 4 4 C 1.53090 * 109.52245 * 239.84259 * 2 1 3 5 5 O 1.42900 * 109.41736 * 297.70701 * 4 2 1 6 6 C 1.42906 * 114.09582 * 298.83704 * 5 4 2 7 7 C 1.53093 * 109.41122 * 61.16119 * 6 5 4 8 8 C 1.53182 * 109.16250 * 302.38537 * 7 6 5 9 9 H 1.08997 * 109.62043 * 297.07543 * 8 7 6 10 10 C 1.50704 * 109.54040 * 176.84876 * 8 7 6 11 11 O 1.21266 * 120.00092 * 327.33082 * 10 8 7 12 12 N 1.34776 * 119.99498 * 147.61227 * 10 8 7 13 13 C 1.37211 * 120.00240 * 6.00365 * 12 10 8 14 14 H 1.08000 * 119.99838 * 37.08983 * 13 12 10 15 15 C 1.38889 * 119.99809 * 217.08653 * 13 12 10 16 16 N 1.31416 * 120.00326 * 16.85968 * 15 13 12 17 17 Si 1.86808 * 119.99756 * 196.85754 * 15 13 12 18 18 H 1.48496 * 109.47091 * 60.00231 * 17 15 13 19 19 H 1.48499 * 109.46985 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46989 * 300.00131 * 17 15 13 21 21 C 1.39429 * 119.99543 * 186.00604 * 12 10 8 22 22 C 1.39062 * 119.70097 * 16.29663 * 21 12 10 23 23 C 1.38380 * 119.09924 * 179.72935 * 22 21 12 24 24 C 1.38822 * 118.49150 * 0.53017 * 23 22 21 25 25 C 1.38150 * 119.31183 * 359.72685 * 24 23 22 26 26 N 1.31879 * 120.85071 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.46950 * 301.38178 * 1 2 3 28 28 H 1.09001 * 109.46764 * 61.37753 * 1 2 3 29 29 H 1.08996 * 109.46872 * 181.37967 * 1 2 3 30 30 H 1.09002 * 109.48105 * 57.69288 * 4 2 1 31 31 H 1.09001 * 109.48289 * 177.70762 * 4 2 1 32 32 H 1.09005 * 109.48036 * 181.14118 * 6 5 4 33 33 H 1.08998 * 109.48088 * 301.17550 * 6 5 4 34 34 H 1.09003 * 109.52122 * 182.48299 * 7 6 5 35 35 H 1.09002 * 109.52435 * 62.29593 * 7 6 5 36 36 H 0.96998 * 119.99713 * 179.97438 * 16 15 13 37 37 H 1.08002 * 120.44786 * 359.97293 * 22 21 12 38 38 H 1.08004 * 120.74775 * 180.25395 * 23 22 21 39 39 H 1.08000 * 120.34417 * 179.70980 * 24 23 22 40 40 H 1.08002 * 119.56889 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 1.6097 -2.0867 -1.2164 6 6 2.0970 -2.8277 -0.0958 7 6 1.5876 -2.1874 1.1981 8 6 2.0419 -0.7254 1.2483 9 1 3.1307 -0.6811 1.2749 10 6 1.4802 -0.0650 2.4810 11 8 0.3980 -0.4039 2.9107 12 7 2.1781 0.9061 3.1025 13 6 3.3396 1.3796 2.5463 14 1 3.4214 1.4848 1.4745 15 6 4.4101 1.7236 3.3616 16 7 4.4521 1.2997 4.6048 17 14 5.7903 2.7890 2.6909 18 1 5.2384 4.0961 2.2528 19 1 6.8052 3.0102 3.7521 20 1 6.4247 2.1069 1.5344 21 6 1.7197 1.4296 4.3108 22 6 0.7566 0.7400 5.0393 23 6 0.3147 1.2681 6.2396 24 6 0.8453 2.4780 6.6661 25 6 1.7955 3.1114 5.8886 26 7 2.2013 2.5815 4.7512 27 1 -0.3633 0.5351 0.8773 28 1 -0.3633 0.4923 -0.9021 29 1 -0.3633 -1.0273 0.0247 30 1 1.6454 -0.2382 -2.1389 31 1 3.1308 -0.6891 -1.2678 32 1 1.7407 -3.8561 -0.1573 33 1 3.1870 -2.8197 -0.1009 34 1 1.9940 -2.7247 2.0550 35 1 0.4988 -2.2316 1.2223 36 1 5.2000 1.5398 5.1740 37 1 0.3618 -0.1970 4.6752 38 1 -0.4294 0.7528 6.8290 39 1 0.5184 2.9196 7.5959 40 1 2.2107 4.0530 6.2163 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = -45.671387 kcal Electronic energy + Delta-G solvation = -24419.967894 eV Core-core repulsion = 21006.717041 eV Total energy + Delta-G solvation = -3413.250853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97353 -40.59410 -39.22529 -36.82110 -35.21578 -33.69535 -32.88776 -32.74425 -31.03238 -28.11235 -27.12952 -26.67389 -24.34775 -23.95785 -23.61734 -21.52151 -20.22080 -19.40437 -18.24615 -17.33623 -17.21661 -16.89173 -16.81438 -16.59627 -16.09899 -16.00561 -15.73485 -15.16253 -14.88306 -14.67352 -14.24639 -14.05297 -13.80171 -13.58092 -13.36842 -13.14735 -12.91871 -12.82236 -12.65110 -12.48213 -12.25916 -12.18262 -12.06942 -11.43045 -11.31093 -11.12571 -10.79261 -10.63295 -10.34220 -10.06558 -9.87474 -8.91950 -8.27912 -6.13162 0.47822 0.72300 1.41049 1.48310 1.54051 1.92256 2.24204 2.61016 3.01336 3.08373 3.50152 3.77547 3.81882 3.86498 4.04392 4.05710 4.16339 4.25267 4.38612 4.50867 4.54295 4.57621 4.60286 4.72222 4.77280 4.78709 4.79376 4.91298 4.96723 5.13689 5.17567 5.19269 5.24639 5.33657 5.44318 5.49019 5.55783 5.75000 6.08867 6.29243 6.46135 7.02781 7.14172 7.72307 7.84596 8.73850 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.007146 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.422947 B = 3917.444955 C = 5169.152271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.111 4.111 3 H 0.075 0.925 4 C 0.074 3.926 5 O -0.389 6.389 6 C 0.068 3.932 7 C -0.135 4.135 8 C -0.082 4.082 9 H 0.092 0.908 10 C 0.485 3.515 11 O -0.584 6.584 12 N -0.389 5.389 13 C -0.378 4.378 14 H 0.103 0.897 15 C 0.042 3.958 16 N -0.868 5.868 17 Si 0.980 3.020 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.256 1.256 21 C 0.362 3.638 22 C -0.240 4.240 23 C -0.070 4.070 24 C -0.222 4.222 25 C 0.099 3.901 26 N -0.498 5.498 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.267 0.733 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 -2.380 -5.427 6.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.131 4.131 3 H 0.093 0.907 4 C -0.003 4.003 5 O -0.308 6.308 6 C -0.008 4.008 7 C -0.173 4.173 8 C -0.104 4.104 9 H 0.111 0.889 10 C 0.278 3.722 11 O -0.469 6.469 12 N -0.099 5.099 13 C -0.504 4.504 14 H 0.120 0.880 15 C -0.166 4.166 16 N -0.501 5.501 17 Si 0.804 3.196 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.180 1.180 21 C 0.134 3.866 22 C -0.262 4.262 23 C -0.096 4.096 24 C -0.243 4.243 25 C -0.061 4.061 26 N -0.212 5.212 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.177 0.823 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.229 -2.263 -5.784 6.599 hybrid contribution 0.417 0.470 1.195 1.350 sum -1.812 -1.794 -4.589 5.250 Atomic orbital electron populations 1.21693 0.94406 1.02079 1.00760 1.21648 0.97125 0.99929 0.94371 0.90672 1.22667 0.99131 0.81666 0.96818 1.87868 1.74642 1.22841 1.45470 1.22650 0.98650 0.95907 0.83623 1.22070 1.02244 0.93392 0.99562 1.21123 1.01668 0.95839 0.91736 0.88945 1.21237 0.84981 0.78862 0.87111 1.90370 1.23150 1.65209 1.68145 1.41462 1.21193 1.29639 1.17594 1.19497 0.89341 1.47976 0.93606 0.87960 1.25950 0.99740 0.95823 0.95087 1.69966 1.31577 1.40118 1.08439 0.85222 0.77106 0.79163 0.78147 1.19838 1.21299 1.17982 1.18807 0.89869 0.89420 0.88540 1.22637 1.02480 1.03584 0.97540 1.21653 0.98295 0.95619 0.94052 1.22109 1.01225 0.97884 1.03081 1.22860 0.93907 0.99369 0.89946 1.67070 1.26156 1.11466 1.16517 0.95511 0.91068 0.92124 0.86591 0.91860 0.86614 0.92038 0.91664 0.91117 0.92360 0.83743 0.82953 0.82319 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 8.28 71.98 0.60 -3.74 16 2 C -0.11 -3.60 2.72 -10.70 -0.03 -3.63 16 3 H 0.07 2.56 7.33 -2.39 -0.02 2.54 16 4 C 0.07 1.87 6.25 72.01 0.45 2.32 16 5 O -0.39 -10.52 10.21 -148.98 -1.52 -12.05 16 6 C 0.07 1.72 6.84 72.01 0.49 2.21 16 7 C -0.13 -4.37 4.75 30.69 0.15 -4.22 16 8 C -0.08 -3.11 1.63 -11.42 -0.02 -3.12 16 9 H 0.09 3.63 6.93 -2.39 -0.02 3.62 16 10 C 0.49 22.92 5.68 87.66 0.50 23.41 16 11 O -0.58 -28.95 11.72 -2.99 -0.04 -28.98 16 12 N -0.39 -20.29 2.77 -464.38 -1.29 -21.57 16 13 C -0.38 -19.35 7.85 84.01 0.66 -18.69 16 14 H 0.10 4.85 6.50 -2.91 -0.02 4.83 16 15 C 0.04 2.14 4.41 84.91 0.37 2.52 16 16 N -0.87 -47.66 11.40 21.65 0.25 -47.42 16 17 Si 0.98 40.65 29.58 68.60 2.03 42.68 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.29 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 21 C 0.36 19.15 6.07 132.90 0.81 19.96 16 22 C -0.24 -11.61 8.85 22.50 0.20 -11.41 16 23 C -0.07 -2.76 10.17 22.44 0.23 -2.53 16 24 C -0.22 -8.03 10.11 22.39 0.23 -7.80 16 25 C 0.10 4.14 11.18 84.66 0.95 5.09 16 26 N -0.50 -25.47 7.57 -192.95 -1.46 -26.93 16 27 H 0.03 1.03 6.59 -2.39 -0.02 1.02 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.99 6.11 -2.39 -0.01 1.98 16 30 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.12 2.36 8.14 -2.38 -0.02 2.34 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 2.46 6.20 -2.39 -0.01 2.45 16 36 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 37 H 0.15 7.29 5.20 -6.93 -0.04 7.25 16 38 H 0.15 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.16 5.64 8.06 -2.91 -0.02 5.62 16 Total: -1.00 -66.18 315.57 4.58 -61.60 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 1.03 Total: 32.28 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.58 Total: 0.38 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -2.50 Total: -95.91 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -1.56 Total: -41.03 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -66.18 4.58 -61.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.929 kcal (2) G-P(sol) polarization free energy of solvation -66.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds