Wall clock time and date at job start Tue Mar 31 2020 06:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.56562 * 2 1 4 4 C 1.53086 * 109.52366 * 120.16396 * 2 1 3 5 5 O 1.42897 * 109.42047 * 62.29598 * 4 2 1 6 6 C 1.42906 * 114.09586 * 61.15539 * 5 4 2 7 7 C 1.53095 * 109.41591 * 298.84651 * 6 5 4 8 8 C 1.53173 * 109.16351 * 57.60521 * 7 6 5 9 9 H 1.09005 * 109.54451 * 62.97958 * 8 7 6 10 10 C 1.50698 * 109.54121 * 183.15032 * 8 7 6 11 11 O 1.21271 * 120.00408 * 25.93030 * 10 8 7 12 12 N 1.34777 * 120.00007 * 205.91780 * 10 8 7 13 13 C 1.37214 * 120.00395 * 208.46924 * 12 10 8 14 14 H 1.08001 * 120.00562 * 193.55046 * 13 12 10 15 15 C 1.38888 * 119.99869 * 13.54502 * 13 12 10 16 16 N 1.31418 * 120.00128 * 111.84779 * 15 13 12 17 17 Si 1.86799 * 120.00175 * 291.85105 * 15 13 12 18 18 H 1.48500 * 109.47305 * 89.99722 * 17 15 13 19 19 H 1.48507 * 109.47239 * 209.99680 * 17 15 13 20 20 H 1.48501 * 109.47192 * 329.99640 * 17 15 13 21 21 C 1.39430 * 119.99748 * 28.47690 * 12 10 8 22 22 C 1.39060 * 119.70018 * 54.92484 * 21 12 10 23 23 C 1.38378 * 119.09926 * 180.02562 * 22 21 12 24 24 C 1.38823 * 118.49215 * 359.97438 * 23 22 21 25 25 C 1.38148 * 119.31349 * 0.02562 * 24 23 22 26 26 N 1.31883 * 120.85023 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46883 * 180.15514 * 1 2 3 28 28 H 1.08997 * 109.46885 * 300.14672 * 1 2 3 29 29 H 1.09000 * 109.47408 * 60.15634 * 1 2 3 30 30 H 1.09006 * 109.47996 * 302.31330 * 4 2 1 31 31 H 1.08997 * 109.48705 * 182.29093 * 4 2 1 32 32 H 1.08996 * 109.48319 * 178.86090 * 6 5 4 33 33 H 1.09005 * 109.47978 * 58.82645 * 6 5 4 34 34 H 1.09004 * 109.52011 * 297.70032 * 7 6 5 35 35 H 1.08997 * 109.57276 * 177.54783 * 7 6 5 36 36 H 0.97001 * 120.00423 * 184.80432 * 16 15 13 37 37 H 1.08000 * 120.45254 * 0.02562 * 22 21 12 38 38 H 1.08005 * 120.75556 * 180.02562 * 23 22 21 39 39 H 1.08005 * 120.34296 * 180.02562 * 24 23 22 40 40 H 1.07996 * 119.57414 * 180.25597 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0417 -0.7250 1.2475 5 8 1.6100 -2.0868 1.2161 6 6 2.0972 -2.8277 0.0954 7 6 1.5877 -2.1872 -1.1984 8 6 2.0419 -0.7252 -1.2484 9 1 3.1307 -0.6823 -1.2759 10 6 1.4802 -0.0647 -2.4810 11 8 0.4586 -0.4845 -2.9818 12 7 2.1130 0.9927 -3.0267 13 6 1.3988 1.9364 -3.7210 14 1 1.9139 2.6571 -4.3388 15 6 0.0132 1.9648 -3.6294 16 7 -0.5851 2.9672 -3.0258 17 14 -1.0001 0.5781 -4.3642 18 1 -1.2024 -0.4816 -3.3438 19 1 -2.3188 1.1051 -4.7987 20 1 -0.2847 0.0085 -5.5342 21 6 3.4936 1.1276 -2.8859 22 6 4.3314 0.0925 -3.2861 23 6 5.6996 0.2394 -3.1402 24 6 6.1846 1.4215 -2.5973 25 6 5.2940 2.4084 -2.2212 26 7 3.9947 2.2402 -2.3722 27 1 -0.3633 -1.0277 0.0028 28 1 -0.3633 0.5161 0.8887 29 1 -0.3634 0.5114 -0.8914 30 1 1.6454 -0.2385 2.1388 31 1 3.1309 -0.6893 1.2677 32 1 1.7409 -3.8560 0.1568 33 1 3.1872 -2.8195 0.1004 34 1 0.4989 -2.2314 -1.2226 35 1 1.9932 -2.7241 -2.0559 36 1 -1.5468 2.9535 -2.9001 37 1 3.9199 -0.8138 -3.7052 38 1 6.3750 -0.5473 -3.4426 39 1 7.2471 1.5681 -2.4704 40 1 5.6669 3.3313 -1.8022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:19 Heat of formation + Delta-G solvation = -1.066111 kcal Electronic energy + Delta-G solvation = -24843.159512 eV Core-core repulsion = 21431.842889 eV Total energy + Delta-G solvation = -3411.316623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.46004 -39.32064 -37.99133 -34.71876 -33.83679 -32.70458 -31.93810 -31.45790 -29.47110 -27.06367 -25.96010 -24.49316 -23.11371 -22.83505 -22.39090 -20.31389 -18.63123 -18.06247 -17.20575 -16.10204 -15.96057 -15.69710 -15.61403 -14.93433 -14.83483 -14.41557 -14.29133 -13.95277 -13.33301 -13.25303 -13.13571 -12.73641 -12.51466 -12.25150 -12.03610 -11.61746 -11.49577 -11.31219 -11.06433 -10.89807 -10.85065 -10.43012 -10.21366 -9.86956 -9.84894 -9.57011 -9.38553 -9.32043 -8.83120 -8.35160 -8.21612 -7.62485 -6.65648 -3.66910 1.49642 1.74808 3.46402 3.50335 3.78526 3.87122 4.01217 4.08721 4.29819 4.71318 4.76553 4.98379 5.08143 5.12808 5.18451 5.25324 5.28456 5.42857 5.48526 5.54004 5.61681 5.70333 5.78016 5.85486 5.94585 6.05251 6.08874 6.11790 6.22957 6.25311 6.45593 6.52949 6.57086 6.58049 6.73628 6.92985 7.05695 7.27130 7.38985 7.81150 8.34128 8.67505 8.90647 9.29392 9.69035 10.03220 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.010577 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.216551 B = 2646.730722 C = 4235.214928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 H 0.081 0.919 4 C 0.070 3.930 5 O -0.382 6.382 6 C 0.063 3.937 7 C -0.137 4.137 8 C -0.088 4.088 9 H 0.074 0.926 10 C 0.410 3.590 11 O -0.518 6.518 12 N -0.367 5.367 13 C -0.434 4.434 14 H 0.101 0.899 15 C 0.132 3.868 16 N -0.731 5.731 17 Si 0.916 3.084 18 H -0.230 1.230 19 H -0.341 1.341 20 H -0.293 1.293 21 C 0.363 3.637 22 C -0.200 4.200 23 C -0.060 4.060 24 C -0.221 4.221 25 C 0.119 3.881 26 N -0.486 5.486 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.281 0.719 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.557 -6.680 6.119 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 H 0.099 0.901 4 C -0.007 4.007 5 O -0.301 6.301 6 C -0.014 4.014 7 C -0.175 4.175 8 C -0.110 4.110 9 H 0.092 0.908 10 C 0.210 3.790 11 O -0.408 6.408 12 N -0.077 5.077 13 C -0.551 4.551 14 H 0.118 0.882 15 C -0.095 4.095 16 N -0.351 5.351 17 Si 0.751 3.249 18 H -0.160 1.160 19 H -0.276 1.276 20 H -0.220 1.220 21 C 0.136 3.864 22 C -0.224 4.224 23 C -0.086 4.086 24 C -0.242 4.242 25 C -0.042 4.042 26 N -0.199 5.199 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.199 -6.057 6.324 11.996 hybrid contribution 0.518 -0.657 -0.947 1.263 sum 8.717 -6.714 5.377 12.247 Atomic orbital electron populations 1.21749 0.93827 1.02118 1.01877 1.21628 0.97932 0.99847 0.93637 0.90070 1.22603 0.97819 0.82247 0.98026 1.87874 1.74353 1.22550 1.45315 1.22587 0.97537 0.95356 0.85915 1.22065 1.03603 0.94434 0.97441 1.21161 0.99960 0.95591 0.94270 0.90778 1.20342 0.87683 0.82391 0.88622 1.90368 1.25917 1.60745 1.63732 1.40934 1.02578 1.20148 1.44070 1.18167 0.89034 1.13460 1.34465 0.88175 1.25686 0.98101 0.95394 0.90347 1.70619 1.12677 1.32004 1.19847 0.85215 0.74820 0.84908 0.79959 1.15990 1.27629 1.22023 1.18632 0.86405 0.89164 0.92245 1.21842 0.93856 1.01350 1.05336 1.21278 0.94506 0.97072 0.95783 1.21870 1.00643 0.95800 1.05921 1.22548 0.88006 0.98054 0.95557 1.67522 1.14644 1.24499 1.13236 0.92183 0.93523 0.91493 0.88980 0.93627 0.89094 0.93684 0.89511 0.91103 0.90820 0.85407 0.85472 0.85672 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.40 37.16 0.31 -2.38 16 2 C -0.11 -2.03 2.78 -90.48 -0.25 -2.29 16 3 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 4 C 0.07 1.05 6.25 37.20 0.23 1.28 16 5 O -0.38 -5.96 10.19 -35.23 -0.36 -6.32 16 6 C 0.06 0.87 6.84 37.21 0.25 1.13 16 7 C -0.14 -2.30 4.66 -26.59 -0.12 -2.42 16 8 C -0.09 -1.67 2.02 -91.59 -0.19 -1.86 16 9 H 0.07 1.34 6.05 -51.93 -0.31 1.03 16 10 C 0.41 9.68 4.65 -10.99 -0.05 9.63 16 11 O -0.52 -13.41 7.55 5.57 0.04 -13.37 16 12 N -0.37 -9.18 2.79 -60.71 -0.17 -9.35 16 13 C -0.43 -12.24 9.54 -14.90 -0.14 -12.38 16 14 H 0.10 2.99 8.06 -52.49 -0.42 2.56 16 15 C 0.13 3.68 4.78 -17.49 -0.08 3.59 16 16 N -0.73 -20.22 13.95 55.49 0.77 -19.44 16 17 Si 0.92 24.32 25.36 -169.99 -4.31 20.01 16 18 H -0.23 -6.18 5.43 54.44 0.30 -5.89 16 19 H -0.34 -8.99 7.11 56.52 0.40 -8.59 16 20 H -0.29 -8.13 7.11 56.52 0.40 -7.72 16 21 C 0.36 7.90 5.39 -154.64 -0.83 7.07 16 22 C -0.20 -3.59 8.34 -39.23 -0.33 -3.92 16 23 C -0.06 -0.86 10.17 -39.31 -0.40 -1.26 16 24 C -0.22 -3.03 10.11 -39.40 -0.40 -3.42 16 25 C 0.12 1.93 11.18 -17.56 -0.20 1.73 16 26 N -0.49 -10.31 10.24 -12.34 -0.13 -10.44 16 27 H 0.06 1.14 6.14 -51.93 -0.32 0.82 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.55 6.73 -51.93 -0.35 1.20 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.62 6.25 -51.93 -0.32 1.30 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.28 7.16 8.32 -40.82 -0.34 6.82 16 37 H 0.13 2.21 8.02 -52.49 -0.42 1.79 16 38 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 40 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -31.74 315.58 -7.21 -38.94 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.62 Total: 0.72 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.19 Total: -5.50 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.48 Total: -39.23 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.32 Total: -19.69 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.31 Total: 20.01 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.74 -7.21 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.876 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds