Wall clock time and date at job start Tue Mar 31 2020 06:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.56562 * 2 1 4 4 C 1.53086 * 109.52366 * 120.16396 * 2 1 3 5 5 O 1.42897 * 109.42047 * 62.29598 * 4 2 1 6 6 C 1.42906 * 114.09586 * 61.15539 * 5 4 2 7 7 C 1.53095 * 109.41591 * 298.84651 * 6 5 4 8 8 C 1.53173 * 109.16351 * 57.60521 * 7 6 5 9 9 H 1.09005 * 109.54451 * 62.97958 * 8 7 6 10 10 C 1.50698 * 109.54121 * 183.15032 * 8 7 6 11 11 O 1.21271 * 120.00408 * 25.93030 * 10 8 7 12 12 N 1.34777 * 120.00007 * 205.91780 * 10 8 7 13 13 C 1.37214 * 120.00395 * 208.46924 * 12 10 8 14 14 H 1.08001 * 120.00562 * 193.55046 * 13 12 10 15 15 C 1.38888 * 119.99869 * 13.54502 * 13 12 10 16 16 N 1.31418 * 120.00128 * 111.84779 * 15 13 12 17 17 Si 1.86799 * 120.00175 * 291.85105 * 15 13 12 18 18 H 1.48500 * 109.47305 * 89.99722 * 17 15 13 19 19 H 1.48507 * 109.47239 * 209.99680 * 17 15 13 20 20 H 1.48501 * 109.47192 * 329.99640 * 17 15 13 21 21 C 1.39430 * 119.99748 * 28.47690 * 12 10 8 22 22 C 1.39060 * 119.70018 * 54.92484 * 21 12 10 23 23 C 1.38378 * 119.09926 * 180.02562 * 22 21 12 24 24 C 1.38823 * 118.49215 * 359.97438 * 23 22 21 25 25 C 1.38148 * 119.31349 * 0.02562 * 24 23 22 26 26 N 1.31883 * 120.85023 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46883 * 180.15514 * 1 2 3 28 28 H 1.08997 * 109.46885 * 300.14672 * 1 2 3 29 29 H 1.09000 * 109.47408 * 60.15634 * 1 2 3 30 30 H 1.09006 * 109.47996 * 302.31330 * 4 2 1 31 31 H 1.08997 * 109.48705 * 182.29093 * 4 2 1 32 32 H 1.08996 * 109.48319 * 178.86090 * 6 5 4 33 33 H 1.09005 * 109.47978 * 58.82645 * 6 5 4 34 34 H 1.09004 * 109.52011 * 297.70032 * 7 6 5 35 35 H 1.08997 * 109.57276 * 177.54783 * 7 6 5 36 36 H 0.97001 * 120.00423 * 184.80432 * 16 15 13 37 37 H 1.08000 * 120.45254 * 0.02562 * 22 21 12 38 38 H 1.08005 * 120.75556 * 180.02562 * 23 22 21 39 39 H 1.08005 * 120.34296 * 180.02562 * 24 23 22 40 40 H 1.07996 * 119.57414 * 180.25597 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0417 -0.7250 1.2475 5 8 1.6100 -2.0868 1.2161 6 6 2.0972 -2.8277 0.0954 7 6 1.5877 -2.1872 -1.1984 8 6 2.0419 -0.7252 -1.2484 9 1 3.1307 -0.6823 -1.2759 10 6 1.4802 -0.0647 -2.4810 11 8 0.4586 -0.4845 -2.9818 12 7 2.1130 0.9927 -3.0267 13 6 1.3988 1.9364 -3.7210 14 1 1.9139 2.6571 -4.3388 15 6 0.0132 1.9648 -3.6294 16 7 -0.5851 2.9672 -3.0258 17 14 -1.0001 0.5781 -4.3642 18 1 -1.2024 -0.4816 -3.3438 19 1 -2.3188 1.1051 -4.7987 20 1 -0.2847 0.0085 -5.5342 21 6 3.4936 1.1276 -2.8859 22 6 4.3314 0.0925 -3.2861 23 6 5.6996 0.2394 -3.1402 24 6 6.1846 1.4215 -2.5973 25 6 5.2940 2.4084 -2.2212 26 7 3.9947 2.2402 -2.3722 27 1 -0.3633 -1.0277 0.0028 28 1 -0.3633 0.5161 0.8887 29 1 -0.3634 0.5114 -0.8914 30 1 1.6454 -0.2385 2.1388 31 1 3.1309 -0.6893 1.2677 32 1 1.7409 -3.8560 0.1568 33 1 3.1872 -2.8195 0.1004 34 1 0.4989 -2.2314 -1.2226 35 1 1.9932 -2.7241 -2.0559 36 1 -1.5468 2.9535 -2.9001 37 1 3.9199 -0.8138 -3.7052 38 1 6.3750 -0.5473 -3.4426 39 1 7.2471 1.5681 -2.4704 40 1 5.6669 3.3313 -1.8022 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:19 Heat of formation + Delta-G solvation = -22.942879 kcal Electronic energy + Delta-G solvation = -24844.108160 eV Core-core repulsion = 21431.842889 eV Total energy + Delta-G solvation = -3412.265271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02993 -40.68349 -39.53560 -36.46929 -35.33756 -34.65264 -33.30540 -32.77230 -30.95894 -28.63938 -27.48679 -26.12792 -24.48241 -24.16487 -23.83079 -21.95726 -20.16478 -19.89252 -18.80671 -17.52032 -17.42141 -17.03244 -16.82722 -16.57417 -16.32818 -16.20964 -15.87402 -15.46832 -14.88250 -14.74514 -14.56459 -14.30556 -13.94648 -13.90144 -13.69245 -13.19445 -13.00531 -12.83900 -12.66335 -12.43019 -12.34358 -12.20318 -11.96446 -11.51477 -11.41490 -11.23593 -10.75882 -10.63781 -10.35988 -10.10250 -9.97098 -9.51145 -8.69406 -5.78088 0.13995 0.46560 1.37725 1.51126 1.64923 1.87612 2.14872 2.64274 2.75025 2.95915 3.01600 3.55343 3.72309 3.74360 3.91140 3.95876 4.08943 4.14849 4.22690 4.29186 4.31589 4.47347 4.50726 4.54401 4.65642 4.69458 4.71149 4.81596 4.86584 4.91040 5.10907 5.13776 5.14953 5.21248 5.29752 5.31210 5.40631 5.66354 5.91632 6.24131 6.45622 6.89812 7.10172 7.50346 7.81658 7.99248 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.010577 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.216551 B = 2646.730722 C = 4235.214928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 H 0.057 0.943 4 C 0.079 3.921 5 O -0.390 6.390 6 C 0.067 3.933 7 C -0.135 4.135 8 C -0.080 4.080 9 H 0.087 0.913 10 C 0.412 3.588 11 O -0.552 6.552 12 N -0.389 5.389 13 C -0.461 4.461 14 H 0.068 0.932 15 C 0.116 3.884 16 N -0.758 5.758 17 Si 0.955 3.045 18 H -0.240 1.240 19 H -0.343 1.343 20 H -0.316 1.316 21 C 0.331 3.669 22 C -0.202 4.202 23 C -0.049 4.049 24 C -0.183 4.183 25 C 0.103 3.897 26 N -0.531 5.531 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.019 0.981 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.288 0.712 37 H 0.129 0.871 38 H 0.177 0.823 39 H 0.179 0.821 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.803 -8.584 8.004 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.128 4.128 3 H 0.075 0.925 4 C 0.002 3.998 5 O -0.309 6.309 6 C -0.009 4.009 7 C -0.173 4.173 8 C -0.101 4.101 9 H 0.105 0.895 10 C 0.211 3.789 11 O -0.443 6.443 12 N -0.101 5.101 13 C -0.578 4.578 14 H 0.086 0.914 15 C -0.109 4.109 16 N -0.381 5.381 17 Si 0.793 3.207 18 H -0.171 1.171 19 H -0.279 1.279 20 H -0.245 1.245 21 C 0.105 3.895 22 C -0.225 4.225 23 C -0.075 4.075 24 C -0.203 4.203 25 C -0.056 4.056 26 N -0.245 5.245 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.147 0.853 38 H 0.194 0.806 39 H 0.196 0.804 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 12.495 -7.936 8.217 16.930 hybrid contribution -0.388 -0.073 -1.530 1.580 sum 12.107 -8.009 6.687 15.982 Atomic orbital electron populations 1.21660 0.95120 1.01747 1.00373 1.21605 0.96788 0.99112 0.95314 0.92462 1.22589 0.98978 0.81798 0.96400 1.87881 1.74839 1.22509 1.45687 1.22723 0.98938 0.95855 0.83422 1.22075 1.02093 0.93136 0.99979 1.21153 1.00398 0.96598 0.91982 0.89456 1.21126 0.86834 0.81875 0.89080 1.90237 1.27504 1.62058 1.64503 1.40957 1.04152 1.20139 1.44869 1.17840 0.89309 1.13877 1.36801 0.91449 1.25918 0.98472 0.95951 0.90510 1.70597 1.13223 1.33159 1.21093 0.84576 0.73913 0.83969 0.78276 1.17053 1.27930 1.24524 1.18834 0.85191 0.91013 0.94445 1.22026 0.95430 1.00266 1.04772 1.21853 0.93121 0.98512 0.93964 1.22476 1.02756 0.93831 1.01249 1.23211 0.86721 1.00198 0.95460 1.67385 1.17633 1.24886 1.14566 0.91915 0.91777 0.96147 0.87227 0.91483 0.86575 0.91193 0.92125 0.90272 0.90129 0.85346 0.80561 0.80411 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.25 8.40 71.99 0.60 -4.65 16 2 C -0.11 -3.94 2.78 -10.70 -0.03 -3.97 16 3 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 4 C 0.08 2.14 6.25 72.01 0.45 2.59 16 5 O -0.39 -10.85 10.19 -148.98 -1.52 -12.37 16 6 C 0.07 1.61 6.84 72.01 0.49 2.10 16 7 C -0.13 -4.33 4.66 30.68 0.14 -4.18 16 8 C -0.08 -3.00 2.02 -11.42 -0.02 -3.02 16 9 H 0.09 3.01 6.05 -2.38 -0.01 3.00 16 10 C 0.41 20.16 4.65 87.66 0.41 20.57 16 11 O -0.55 -30.05 7.55 -3.00 -0.02 -30.07 16 12 N -0.39 -20.32 2.79 -464.38 -1.30 -21.62 16 13 C -0.46 -27.76 9.54 84.01 0.80 -26.96 16 14 H 0.07 4.37 8.06 -2.91 -0.02 4.34 16 15 C 0.12 6.89 4.78 84.91 0.41 7.29 16 16 N -0.76 -44.64 13.95 21.65 0.30 -44.34 16 17 Si 0.95 53.58 25.36 68.60 1.74 55.32 16 18 H -0.24 -13.67 5.43 66.48 0.36 -13.31 16 19 H -0.34 -18.82 7.11 99.48 0.71 -18.11 16 20 H -0.32 -18.56 7.11 99.48 0.71 -17.85 16 21 C 0.33 14.45 5.39 132.90 0.72 15.17 16 22 C -0.20 -6.80 8.34 22.50 0.19 -6.61 16 23 C -0.05 -1.12 10.17 22.44 0.23 -0.89 16 24 C -0.18 -3.90 10.11 22.39 0.23 -3.67 16 25 C 0.10 3.01 11.18 84.66 0.95 3.95 16 26 N -0.53 -22.39 10.24 -192.95 -1.97 -24.36 16 27 H 0.06 2.42 6.14 -2.38 -0.01 2.40 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.02 0.97 6.73 -2.39 -0.02 0.96 16 30 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.12 2.25 8.14 -2.39 -0.02 2.24 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 34 H 0.06 2.27 6.25 -2.38 -0.01 2.26 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.29 15.60 8.32 -92.71 -0.77 14.83 16 37 H 0.13 4.24 8.02 -2.91 -0.02 4.22 16 38 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 39 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -77.43 315.58 3.48 -73.96 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.69 Total: 5.75 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 5.56 Total: -2.27 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -2.97 Total: -90.32 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.54 Total: -42.44 kcal Atomic # 14 Polarization: 53.58 SS G_CDS: 1.74 Total: 55.32 kcal Total: -77.43 3.48 -73.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.013 kcal (2) G-P(sol) polarization free energy of solvation -77.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds