Wall clock time and date at job start Tue Mar 31 2020 06:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.57615 * 2 1 4 4 C 1.53096 * 109.52126 * 120.16150 * 2 1 3 5 5 O 1.42902 * 109.41323 * 177.51268 * 4 2 1 6 6 C 1.42903 * 114.10253 * 298.83841 * 5 4 2 7 7 C 1.53097 * 109.40938 * 61.15667 * 6 5 4 8 8 C 1.53177 * 109.52137 * 239.84274 * 2 1 3 9 9 H 1.08994 * 109.62016 * 303.02577 * 8 2 1 10 10 C 1.50700 * 109.54344 * 63.24894 * 8 2 1 11 11 O 1.21272 * 119.99896 * 30.84112 * 10 8 2 12 12 N 1.34778 * 120.00124 * 210.84404 * 10 8 2 13 13 C 1.37214 * 119.99651 * 354.75837 * 12 10 8 14 14 H 1.07999 * 119.99986 * 43.68261 * 13 12 10 15 15 C 1.38899 * 119.99861 * 223.95079 * 13 12 10 16 16 N 1.31408 * 119.99755 * 204.59346 * 15 13 12 17 17 Si 1.86805 * 120.00065 * 24.59176 * 15 13 12 18 18 H 1.48501 * 109.46705 * 91.02165 * 17 15 13 19 19 H 1.48495 * 109.46983 * 211.02344 * 17 15 13 20 20 H 1.48496 * 109.46889 * 331.02286 * 17 15 13 21 21 C 1.39424 * 119.99937 * 174.76252 * 12 10 8 22 22 C 1.39067 * 119.69678 * 192.66288 * 21 12 10 23 23 C 1.38381 * 119.10196 * 179.97438 * 22 21 12 24 24 C 1.38834 * 118.48860 * 359.97438 * 23 22 21 25 25 C 1.38150 * 119.31272 * 359.97438 * 24 23 22 26 26 N 1.31884 * 120.84777 * 359.74691 * 25 24 23 27 27 H 1.08994 * 109.47068 * 180.15440 * 1 2 3 28 28 H 1.08995 * 109.47037 * 300.15259 * 1 2 3 29 29 H 1.08995 * 109.46885 * 60.15698 * 1 2 3 30 30 H 1.09000 * 109.48204 * 57.52823 * 4 2 1 31 31 H 1.08997 * 109.48765 * 297.50121 * 4 2 1 32 32 H 1.09004 * 109.47644 * 301.18183 * 6 5 4 33 33 H 1.08998 * 109.49538 * 181.14911 * 6 5 4 34 34 H 1.09001 * 109.51818 * 182.48741 * 7 6 5 35 35 H 1.09000 * 109.52416 * 62.30765 * 7 6 5 36 36 H 0.97005 * 120.00071 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.44700 * 359.95147 * 22 21 12 38 38 H 1.07992 * 120.75533 * 180.02562 * 23 22 21 39 39 H 1.07994 * 120.33953 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.57553 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7250 1.2476 5 8 3.4694 -0.7744 1.2163 6 6 4.0044 -1.4817 0.0957 7 6 3.5716 -0.7872 -1.1982 8 6 2.0419 -0.7253 -1.2483 9 1 1.6368 -1.7368 -1.2758 10 6 1.6078 0.0252 -2.4809 11 8 1.4744 1.2300 -2.4417 12 7 1.3679 -0.6424 -3.6269 13 6 1.6215 -1.9888 -3.7024 14 1 1.3306 -2.6394 -2.8910 15 6 2.2574 -2.5141 -4.8200 16 7 2.0852 -3.7766 -5.1411 17 14 3.3573 -1.4257 -5.8665 18 1 4.7537 -1.5080 -5.3678 19 1 3.3080 -1.8838 -7.2782 20 1 2.8846 -0.0204 -5.7853 21 6 0.8620 0.0350 -4.7355 22 6 0.3698 -0.6861 -5.8180 23 6 -0.1298 -0.0012 -6.9117 24 6 -0.1205 1.3868 -6.8847 25 6 0.3829 2.0383 -5.7753 26 7 0.8476 1.3588 -4.7450 27 1 -0.3633 -1.0276 0.0028 28 1 -0.3633 0.5162 0.8886 29 1 -0.3633 0.5114 -0.8914 30 1 1.6431 -1.7393 1.2677 31 1 1.7159 -0.1888 2.1389 32 1 3.6315 -2.5060 0.1007 33 1 5.0926 -1.4907 0.1570 34 1 3.9417 -1.3501 -2.0551 35 1 3.9781 0.2239 -1.2224 36 1 2.5289 -4.1434 -5.9218 37 1 0.3778 -1.7660 -5.8054 38 1 -0.5190 -0.5343 -7.7665 39 1 -0.5027 1.9514 -7.7222 40 1 0.3919 3.1179 -5.7496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:22 Heat of formation + Delta-G solvation = -26.145367 kcal Electronic energy + Delta-G solvation = -24443.131987 eV Core-core repulsion = 21030.727846 eV Total energy + Delta-G solvation = -3412.404141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39446 -39.26208 -37.73923 -35.27045 -33.91147 -32.42828 -31.85345 -31.44719 -29.51383 -26.73052 -25.64114 -25.21005 -22.87996 -22.19626 -21.95443 -20.20565 -19.10957 -18.10600 -16.69841 -16.02973 -15.82757 -15.51628 -15.31887 -15.00487 -14.45275 -14.32632 -14.20536 -13.91563 -13.57092 -13.14954 -12.95218 -12.73790 -12.41166 -12.29196 -12.02427 -11.81542 -11.63448 -11.49034 -11.19507 -10.98254 -10.82721 -10.62560 -10.26439 -10.17904 -9.91589 -9.69666 -9.45972 -9.11426 -9.02976 -8.76068 -8.13185 -7.34434 -6.76712 -4.43573 1.85389 2.07761 3.03911 3.12086 3.25950 3.58842 3.87287 4.02893 4.12340 4.50247 4.87796 5.02121 5.10937 5.17008 5.27261 5.42093 5.46270 5.51308 5.67060 5.70840 5.79092 5.82074 5.89599 5.96214 5.99567 6.02050 6.12021 6.16943 6.26686 6.39609 6.53442 6.54838 6.55716 6.73873 6.74834 6.92726 7.12955 7.41761 7.47073 7.84763 8.03750 8.57434 8.78128 9.11114 9.50331 10.29931 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.007076 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.362053 B = 3955.887534 C = 4845.503927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 H 0.087 0.913 4 C 0.069 3.931 5 O -0.388 6.388 6 C 0.065 3.935 7 C -0.140 4.140 8 C -0.088 4.088 9 H 0.099 0.901 10 C 0.501 3.499 11 O -0.514 6.514 12 N -0.405 5.405 13 C -0.371 4.371 14 H 0.114 0.886 15 C 0.092 3.908 16 N -0.838 5.838 17 Si 0.852 3.148 18 H -0.273 1.273 19 H -0.276 1.276 20 H -0.251 1.251 21 C 0.373 3.627 22 C -0.206 4.206 23 C -0.064 4.064 24 C -0.240 4.240 25 C 0.120 3.880 26 N -0.493 5.493 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.280 0.720 37 H 0.153 0.847 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.019 2.658 3.760 4.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 H 0.105 0.895 4 C -0.008 4.008 5 O -0.306 6.306 6 C -0.012 4.012 7 C -0.178 4.178 8 C -0.109 4.109 9 H 0.117 0.883 10 C 0.291 3.709 11 O -0.388 6.388 12 N -0.118 5.118 13 C -0.497 4.497 14 H 0.131 0.869 15 C -0.120 4.120 16 N -0.469 5.469 17 Si 0.676 3.324 18 H -0.199 1.199 19 H -0.201 1.201 20 H -0.175 1.175 21 C 0.143 3.857 22 C -0.229 4.229 23 C -0.090 4.090 24 C -0.262 4.262 25 C -0.039 4.039 26 N -0.209 5.209 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.170 0.830 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.568 3.562 4.652 5.887 hybrid contribution 0.114 -0.365 -1.907 1.945 sum -0.454 3.198 2.745 4.239 Atomic orbital electron populations 1.21739 0.94611 1.01638 1.02195 1.21662 0.96340 1.01130 0.93991 0.89474 1.22631 0.80965 0.99518 0.97640 1.87869 1.20406 1.76651 1.45702 1.22578 0.98700 0.94699 0.85176 1.22040 0.94364 1.02291 0.99076 1.21202 0.96712 1.00870 0.92100 0.88310 1.20790 0.77806 0.87294 0.85058 1.90659 1.49586 1.13935 1.84647 1.41633 1.53076 1.09060 1.08015 1.18919 1.42285 0.79792 1.08709 0.86885 1.25290 0.94994 0.95439 0.96249 1.69812 1.37746 1.14036 1.25353 0.87182 0.81912 0.83242 0.80104 1.19868 1.20131 1.17463 1.18971 0.90123 0.87991 0.88661 1.21912 1.03683 1.02896 0.94443 1.21271 0.96272 0.94092 0.97347 1.21756 1.08420 0.95178 1.00837 1.22442 0.93494 0.99448 0.88492 1.67678 1.18725 1.06932 1.27581 0.92803 0.92798 0.91854 0.93203 0.89144 0.92824 0.88988 0.89497 0.91198 0.90925 0.82954 0.85802 0.86213 0.83901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.98 37.16 0.33 -1.90 16 2 C -0.11 -1.84 2.11 -90.48 -0.19 -2.03 16 3 H 0.09 1.58 7.75 -51.93 -0.40 1.17 16 4 C 0.07 0.97 6.13 37.21 0.23 1.20 16 5 O -0.39 -6.01 10.76 -35.23 -0.38 -6.39 16 6 C 0.07 0.95 6.84 37.21 0.25 1.21 16 7 C -0.14 -2.44 5.40 -26.59 -0.14 -2.59 16 8 C -0.09 -1.64 1.49 -91.59 -0.14 -1.78 16 9 H 0.10 1.86 6.34 -51.93 -0.33 1.53 16 10 C 0.50 11.46 5.75 -10.98 -0.06 11.39 16 11 O -0.51 -12.82 13.93 5.56 0.08 -12.74 16 12 N -0.40 -9.76 2.30 -60.71 -0.14 -9.89 16 13 C -0.37 -9.02 8.27 -14.90 -0.12 -9.14 16 14 H 0.11 2.80 6.71 -52.49 -0.35 2.44 16 15 C 0.09 2.25 3.59 -17.49 -0.06 2.19 16 16 N -0.84 -21.09 13.96 55.49 0.77 -20.31 16 17 Si 0.85 20.03 25.85 -169.99 -4.39 15.63 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.25 -6.31 5.44 56.52 0.31 -6.00 16 21 C 0.37 8.99 4.59 -154.64 -0.71 8.28 16 22 C -0.21 -4.58 6.70 -39.22 -0.26 -4.84 16 23 C -0.06 -1.20 10.17 -39.31 -0.40 -1.60 16 24 C -0.24 -4.20 10.11 -39.39 -0.40 -4.59 16 25 C 0.12 2.36 11.18 -17.56 -0.20 2.16 16 26 N -0.49 -11.73 7.96 -12.34 -0.10 -11.83 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.16 6.95 -51.93 -0.36 0.80 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 37 H 0.15 3.56 5.83 -52.49 -0.31 3.26 16 38 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -29.15 316.89 -6.88 -36.03 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.63 Total: 6.77 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -1.87 Total: -2.04 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.54 Total: -42.04 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.30 Total: -19.13 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.39 Total: 15.63 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.15 -6.88 -36.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.888 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds