Wall clock time and date at job start Tue Mar 31 2020 06:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.57615 * 2 1 4 4 C 1.53096 * 109.52126 * 120.16150 * 2 1 3 5 5 O 1.42902 * 109.41323 * 177.51268 * 4 2 1 6 6 C 1.42903 * 114.10253 * 298.83841 * 5 4 2 7 7 C 1.53097 * 109.40938 * 61.15667 * 6 5 4 8 8 C 1.53177 * 109.52137 * 239.84274 * 2 1 3 9 9 H 1.08994 * 109.62016 * 303.02577 * 8 2 1 10 10 C 1.50700 * 109.54344 * 63.24894 * 8 2 1 11 11 O 1.21272 * 119.99896 * 30.84112 * 10 8 2 12 12 N 1.34778 * 120.00124 * 210.84404 * 10 8 2 13 13 C 1.37214 * 119.99651 * 354.75837 * 12 10 8 14 14 H 1.07999 * 119.99986 * 43.68261 * 13 12 10 15 15 C 1.38899 * 119.99861 * 223.95079 * 13 12 10 16 16 N 1.31408 * 119.99755 * 204.59346 * 15 13 12 17 17 Si 1.86805 * 120.00065 * 24.59176 * 15 13 12 18 18 H 1.48501 * 109.46705 * 91.02165 * 17 15 13 19 19 H 1.48495 * 109.46983 * 211.02344 * 17 15 13 20 20 H 1.48496 * 109.46889 * 331.02286 * 17 15 13 21 21 C 1.39424 * 119.99937 * 174.76252 * 12 10 8 22 22 C 1.39067 * 119.69678 * 192.66288 * 21 12 10 23 23 C 1.38381 * 119.10196 * 179.97438 * 22 21 12 24 24 C 1.38834 * 118.48860 * 359.97438 * 23 22 21 25 25 C 1.38150 * 119.31272 * 359.97438 * 24 23 22 26 26 N 1.31884 * 120.84777 * 359.74691 * 25 24 23 27 27 H 1.08994 * 109.47068 * 180.15440 * 1 2 3 28 28 H 1.08995 * 109.47037 * 300.15259 * 1 2 3 29 29 H 1.08995 * 109.46885 * 60.15698 * 1 2 3 30 30 H 1.09000 * 109.48204 * 57.52823 * 4 2 1 31 31 H 1.08997 * 109.48765 * 297.50121 * 4 2 1 32 32 H 1.09004 * 109.47644 * 301.18183 * 6 5 4 33 33 H 1.08998 * 109.49538 * 181.14911 * 6 5 4 34 34 H 1.09001 * 109.51818 * 182.48741 * 7 6 5 35 35 H 1.09000 * 109.52416 * 62.30765 * 7 6 5 36 36 H 0.97005 * 120.00071 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.44700 * 359.95147 * 22 21 12 38 38 H 1.07992 * 120.75533 * 180.02562 * 23 22 21 39 39 H 1.07994 * 120.33953 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.57553 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0416 -0.7250 1.2476 5 8 3.4694 -0.7744 1.2163 6 6 4.0044 -1.4817 0.0957 7 6 3.5716 -0.7872 -1.1982 8 6 2.0419 -0.7253 -1.2483 9 1 1.6368 -1.7368 -1.2758 10 6 1.6078 0.0252 -2.4809 11 8 1.4744 1.2300 -2.4417 12 7 1.3679 -0.6424 -3.6269 13 6 1.6215 -1.9888 -3.7024 14 1 1.3306 -2.6394 -2.8910 15 6 2.2574 -2.5141 -4.8200 16 7 2.0852 -3.7766 -5.1411 17 14 3.3573 -1.4257 -5.8665 18 1 4.7537 -1.5080 -5.3678 19 1 3.3080 -1.8838 -7.2782 20 1 2.8846 -0.0204 -5.7853 21 6 0.8620 0.0350 -4.7355 22 6 0.3698 -0.6861 -5.8180 23 6 -0.1298 -0.0012 -6.9117 24 6 -0.1205 1.3868 -6.8847 25 6 0.3829 2.0383 -5.7753 26 7 0.8476 1.3588 -4.7450 27 1 -0.3633 -1.0276 0.0028 28 1 -0.3633 0.5162 0.8886 29 1 -0.3633 0.5114 -0.8914 30 1 1.6431 -1.7393 1.2677 31 1 1.7159 -0.1888 2.1389 32 1 3.6315 -2.5060 0.1007 33 1 5.0926 -1.4907 0.1570 34 1 3.9417 -1.3501 -2.0551 35 1 3.9781 0.2239 -1.2224 36 1 2.5289 -4.1434 -5.9218 37 1 0.3778 -1.7660 -5.8054 38 1 -0.5190 -0.5343 -7.7665 39 1 -0.5027 1.9514 -7.7222 40 1 0.3919 3.1179 -5.7496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:21 Heat of formation + Delta-G solvation = -43.967208 kcal Electronic energy + Delta-G solvation = -24443.904800 eV Core-core repulsion = 21030.727846 eV Total energy + Delta-G solvation = -3413.176954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03647 -40.69867 -39.25533 -37.04094 -35.29395 -34.27272 -33.20876 -33.06014 -31.10496 -28.03867 -27.29133 -26.72361 -24.44155 -23.78521 -23.26268 -21.67092 -20.83941 -19.72322 -18.33457 -17.75324 -17.12703 -17.01627 -16.77655 -16.57071 -16.07051 -15.90264 -15.55080 -15.47343 -15.10096 -14.87313 -14.51423 -14.39525 -14.02481 -13.79757 -13.46127 -13.19978 -13.06143 -12.99348 -12.90782 -12.53577 -12.37696 -12.10750 -11.90016 -11.60858 -11.44354 -11.29088 -10.92915 -10.77576 -10.58152 -10.45722 -9.80476 -9.06044 -8.67861 -6.34075 0.24643 0.50532 1.14845 1.21110 1.35203 1.86289 2.08018 2.28097 2.71149 2.97478 3.20107 3.60698 3.67760 3.84318 3.92222 3.99286 4.07066 4.29122 4.29992 4.35240 4.41755 4.50217 4.51309 4.59204 4.67070 4.68391 4.78697 4.86778 4.92755 4.98458 5.07687 5.13058 5.19807 5.24116 5.31019 5.38666 5.45877 5.84548 5.96305 6.24503 6.25061 6.76430 7.02312 7.34846 7.75089 8.42343 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.007076 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.362053 B = 3955.887534 C = 4845.503927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 H 0.066 0.934 4 C 0.072 3.928 5 O -0.395 6.395 6 C 0.071 3.929 7 C -0.137 4.137 8 C -0.085 4.085 9 H 0.096 0.904 10 C 0.493 3.507 11 O -0.545 6.545 12 N -0.419 5.419 13 C -0.365 4.365 14 H 0.102 0.898 15 C 0.078 3.922 16 N -0.861 5.861 17 Si 0.889 3.111 18 H -0.276 1.276 19 H -0.266 1.266 20 H -0.273 1.273 21 C 0.342 3.658 22 C -0.226 4.226 23 C -0.061 4.061 24 C -0.215 4.215 25 C 0.104 3.896 26 N -0.530 5.530 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.286 0.714 37 H 0.135 0.865 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 3.018 3.444 4.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.126 4.126 3 H 0.084 0.916 4 C -0.004 4.004 5 O -0.314 6.314 6 C -0.005 4.005 7 C -0.175 4.175 8 C -0.106 4.106 9 H 0.114 0.886 10 C 0.284 3.716 11 O -0.421 6.421 12 N -0.133 5.133 13 C -0.491 4.491 14 H 0.120 0.880 15 C -0.131 4.131 16 N -0.495 5.495 17 Si 0.714 3.286 18 H -0.202 1.202 19 H -0.191 1.191 20 H -0.199 1.199 21 C 0.113 3.887 22 C -0.249 4.249 23 C -0.086 4.086 24 C -0.237 4.237 25 C -0.054 4.054 26 N -0.246 5.246 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.180 0.820 39 H 0.188 0.812 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.027 3.913 4.316 5.915 hybrid contribution 0.146 -0.339 -1.917 1.952 sum -0.882 3.574 2.398 4.394 Atomic orbital electron populations 1.21678 0.93949 1.02146 1.01764 1.21645 0.96899 0.99969 0.94129 0.91575 1.22748 0.80276 1.00396 0.97007 1.87867 1.21203 1.76815 1.45512 1.22616 1.00058 0.94607 0.83259 1.22022 0.93365 1.01654 1.00447 1.21255 0.97580 1.00298 0.91442 0.88619 1.21485 0.77048 0.87298 0.85814 1.90612 1.51116 1.15189 1.85231 1.41782 1.53817 1.08943 1.08739 1.18791 1.41913 0.80046 1.08350 0.88040 1.25460 0.95319 0.95702 0.96667 1.69820 1.38818 1.14617 1.26230 0.86652 0.80758 0.81193 0.80002 1.20240 1.19075 1.19856 1.19216 0.91692 0.88555 0.89196 1.21902 1.05315 1.02174 0.95557 1.21780 0.94704 0.94993 0.97144 1.22260 1.05487 0.94849 1.01087 1.23127 0.92949 1.00986 0.88351 1.67627 1.20029 1.07158 1.29828 0.91813 0.89937 0.95451 0.91628 0.86466 0.91636 0.86780 0.91108 0.92560 0.90386 0.84707 0.82028 0.81228 0.80884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 8.98 71.98 0.65 -3.59 16 2 C -0.11 -3.51 2.11 -10.70 -0.02 -3.53 16 3 H 0.07 2.44 7.75 -2.39 -0.02 2.42 16 4 C 0.07 1.87 6.13 72.01 0.44 2.31 16 5 O -0.40 -11.49 10.76 -148.98 -1.60 -13.10 16 6 C 0.07 1.99 6.84 72.01 0.49 2.49 16 7 C -0.14 -4.87 5.40 30.69 0.17 -4.70 16 8 C -0.08 -3.26 1.49 -11.42 -0.02 -3.27 16 9 H 0.10 3.70 6.34 -2.39 -0.02 3.69 16 10 C 0.49 23.49 5.75 87.66 0.50 23.99 16 11 O -0.54 -28.42 13.93 -3.01 -0.04 -28.46 16 12 N -0.42 -20.92 2.30 -464.37 -1.07 -21.99 16 13 C -0.36 -18.30 8.27 84.01 0.69 -17.61 16 14 H 0.10 5.21 6.71 -2.91 -0.02 5.20 16 15 C 0.08 3.90 3.59 84.91 0.30 4.20 16 16 N -0.86 -43.78 13.96 21.65 0.30 -43.47 16 17 Si 0.89 41.81 25.85 68.60 1.77 43.58 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.27 -13.94 5.44 99.48 0.54 -13.40 16 21 C 0.34 16.83 4.59 132.91 0.61 17.44 16 22 C -0.23 -10.03 6.70 22.50 0.15 -9.88 16 23 C -0.06 -2.11 10.17 22.45 0.23 -1.89 16 24 C -0.22 -6.77 10.11 22.39 0.23 -6.55 16 25 C 0.10 3.89 11.18 84.66 0.95 4.84 16 26 N -0.53 -25.46 7.96 -192.95 -1.54 -27.00 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.03 1.02 6.95 -2.39 -0.02 1.00 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.29 13.56 8.31 -92.70 -0.77 12.79 16 37 H 0.14 6.41 5.83 -2.91 -0.02 6.39 16 38 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 39 H 0.17 3.66 8.06 -2.91 -0.02 3.63 16 40 H 0.17 5.20 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -65.63 316.89 4.07 -61.56 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.87 Total: 24.63 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.37 Total: 4.25 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -2.30 Total: -92.46 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.65 Total: -41.56 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.77 Total: 43.58 kcal Total: -65.63 4.07 -61.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.589 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds