Wall clock time and date at job start Tue Mar 31 2020 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.52293 * 2 1 4 4 C 1.53097 * 109.52159 * 239.87445 * 2 1 3 5 5 O 1.42912 * 109.40805 * 182.55543 * 4 2 1 6 6 C 1.42903 * 114.15600 * 61.05838 * 5 4 2 7 7 C 1.53090 * 109.41431 * 298.87608 * 6 5 4 8 8 C 1.53171 * 109.16566 * 57.60733 * 7 6 5 9 9 H 1.08994 * 109.54520 * 62.88843 * 8 7 6 10 10 C 1.50701 * 109.54337 * 183.15554 * 8 7 6 11 11 O 1.21269 * 120.00246 * 33.88771 * 10 8 7 12 12 N 1.34778 * 119.99965 * 213.88764 * 10 8 7 13 13 C 1.37211 * 120.00160 * 182.51980 * 12 10 8 14 14 H 1.07994 * 120.00460 * 115.70376 * 13 12 10 15 15 C 1.38897 * 119.99563 * 295.70251 * 13 12 10 16 16 N 1.31413 * 120.00172 * 358.72098 * 15 13 12 17 17 Si 1.86804 * 119.99672 * 178.72645 * 15 13 12 18 18 H 1.48500 * 109.47282 * 60.00074 * 17 15 13 19 19 H 1.48502 * 109.46964 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47003 * 299.99708 * 17 15 13 21 21 C 1.39430 * 120.00174 * 2.52026 * 12 10 8 22 22 C 1.39067 * 119.69631 * 64.64614 * 21 12 10 23 23 C 1.38382 * 119.09730 * 179.77850 * 22 21 12 24 24 C 1.38825 * 118.49252 * 0.49141 * 23 22 21 25 25 C 1.38149 * 119.30927 * 359.75328 * 24 23 22 26 26 N 1.31872 * 120.85261 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47195 * 300.00120 * 1 2 3 28 28 H 1.08997 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46579 * 60.00020 * 1 2 3 30 30 H 1.08998 * 109.47695 * 302.46635 * 4 2 1 31 31 H 1.08990 * 109.48179 * 62.50591 * 4 2 1 32 32 H 1.08999 * 109.48172 * 178.89172 * 6 5 4 33 33 H 1.09000 * 109.48183 * 58.85514 * 6 5 4 34 34 H 1.09002 * 109.51940 * 297.69998 * 7 6 5 35 35 H 1.08998 * 109.52291 * 177.52057 * 7 6 5 36 36 H 0.97002 * 119.99694 * 184.99573 * 16 15 13 37 37 H 1.07996 * 120.45273 * 0.02562 * 22 21 12 38 38 H 1.08002 * 120.75127 * 180.22317 * 23 22 21 39 39 H 1.08000 * 120.34715 * 179.73122 * 24 23 22 40 40 H 1.08005 * 119.57245 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2481 5 8 3.4695 -0.7750 -1.2158 6 6 4.0044 -1.4817 -0.0948 7 6 3.5715 -0.7865 1.1986 8 6 2.0419 -0.7246 1.2487 9 1 1.6367 -1.7361 1.2751 10 6 1.6078 0.0266 2.4809 11 8 2.2783 0.9473 2.8974 12 7 0.4744 -0.3248 3.1200 13 6 0.0519 0.3916 4.2113 14 1 -0.8789 0.9378 4.1714 15 6 0.8213 0.4141 5.3675 16 7 1.9413 -0.2709 5.4250 17 14 0.2638 1.4181 6.8409 18 1 -1.0607 0.9287 7.3008 19 1 1.2531 1.2764 7.9393 20 1 0.1562 2.8476 6.4537 21 6 -0.2687 -1.4163 2.6723 22 6 0.2806 -2.6927 2.7265 23 6 -0.4696 -3.7676 2.2832 24 6 -1.7445 -3.5267 1.7894 25 6 -2.2249 -2.2317 1.7601 26 7 -1.4889 -1.2274 2.1946 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 -0.8900 30 1 1.6432 -1.7385 -1.2686 31 1 1.7160 -0.1874 -2.1389 32 1 5.0926 -1.4905 -0.1562 33 1 3.6316 -2.5060 -0.0993 34 1 3.9780 0.2246 1.2223 35 1 3.9417 -1.3489 2.0558 36 1 2.4413 -0.3141 6.2550 37 1 1.2777 -2.8434 3.1131 38 1 -0.0707 -4.7707 2.3165 39 1 -2.3543 -4.3430 1.4315 40 1 -3.2160 -2.0394 1.3764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:24 Heat of formation + Delta-G solvation = -33.630562 kcal Electronic energy + Delta-G solvation = -24778.503435 eV Core-core repulsion = 21365.774712 eV Total energy + Delta-G solvation = -3412.728724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39585 -39.10155 -37.67243 -34.50733 -33.98075 -32.02422 -31.97939 -31.53138 -29.21360 -26.79381 -25.97017 -24.33715 -22.98893 -22.54422 -21.90607 -20.47185 -18.95880 -17.62281 -16.81226 -16.01710 -15.84302 -15.61504 -15.34812 -14.99599 -14.41472 -14.28753 -14.14372 -13.86772 -13.43124 -13.10518 -12.78323 -12.69734 -12.40169 -12.21218 -11.82353 -11.62702 -11.50746 -11.30880 -11.01848 -10.89984 -10.78116 -10.64198 -10.37561 -10.15552 -9.98594 -9.44206 -9.32831 -9.06904 -8.84290 -8.59517 -8.10149 -7.20225 -6.23851 -4.20690 1.63956 1.79281 3.25913 3.30305 3.32172 3.92474 4.04578 4.10217 4.36717 4.55837 4.94180 5.05921 5.12118 5.13807 5.20911 5.26001 5.37788 5.48744 5.51654 5.59058 5.67233 5.71891 5.82274 5.84612 5.90381 5.95011 6.10686 6.15428 6.21622 6.33028 6.41779 6.54733 6.58718 6.63030 6.72384 6.78397 7.13649 7.38114 7.61265 8.35007 8.51727 8.91893 8.99711 9.44277 10.01975 10.85471 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.007946 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.057218 B = 3522.886782 C = 4660.176206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 H 0.082 0.918 4 C 0.071 3.929 5 O -0.386 6.386 6 C 0.063 3.937 7 C -0.136 4.136 8 C -0.112 4.112 9 H 0.081 0.919 10 C 0.520 3.480 11 O -0.516 6.516 12 N -0.413 5.413 13 C -0.338 4.338 14 H 0.079 0.921 15 C 0.070 3.930 16 N -0.852 5.852 17 Si 0.920 3.080 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.391 3.609 22 C -0.182 4.182 23 C -0.071 4.071 24 C -0.208 4.208 25 C 0.110 3.890 26 N -0.492 5.492 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.267 0.733 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 -7.884 -9.904 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 H 0.100 0.900 4 C -0.006 4.006 5 O -0.305 6.305 6 C -0.013 4.013 7 C -0.174 4.174 8 C -0.134 4.134 9 H 0.100 0.900 10 C 0.307 3.693 11 O -0.390 6.390 12 N -0.134 5.134 13 C -0.465 4.465 14 H 0.097 0.903 15 C -0.139 4.139 16 N -0.485 5.485 17 Si 0.746 3.254 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.196 1.196 21 C 0.164 3.836 22 C -0.205 4.205 23 C -0.098 4.098 24 C -0.229 4.229 25 C -0.049 4.049 26 N -0.205 5.205 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.016 -6.391 -9.703 11.792 hybrid contribution -0.171 -0.813 1.247 1.499 sum -2.187 -7.204 -8.456 11.321 Atomic orbital electron populations 1.21935 0.93714 1.01896 1.02982 1.21672 0.96830 1.00756 0.93897 0.89964 1.22625 0.80895 0.99326 0.97737 1.87869 1.20423 1.76662 1.45535 1.22610 0.98711 0.94285 0.85730 1.22017 0.94613 1.03135 0.97660 1.21553 0.96718 1.00329 0.94839 0.90044 1.20068 0.82000 0.84266 0.82960 1.90529 1.51923 1.30397 1.66193 1.40769 1.20781 1.25262 1.26548 1.18974 1.08299 1.29341 0.89846 0.90331 1.25583 0.94448 0.95263 0.98608 1.69802 1.13232 1.38710 1.26788 0.86151 0.78111 0.80676 0.80457 1.19968 1.20948 1.19566 1.19003 0.88286 0.88029 0.88274 1.22250 1.02497 0.92767 1.02936 1.21385 0.93987 0.98651 0.95754 1.21907 0.97189 0.98452 1.05342 1.22482 0.98575 0.88211 0.95604 1.67474 1.07072 1.35605 1.10313 0.90176 0.93168 0.93061 0.93498 0.89031 0.88966 0.93563 0.89947 0.90593 0.92320 0.85003 0.85605 0.85721 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 7.42 37.16 0.28 -2.24 16 2 C -0.11 -1.95 2.40 -90.48 -0.22 -2.17 16 3 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 4 C 0.07 1.03 6.13 37.21 0.23 1.26 16 5 O -0.39 -6.08 10.76 -35.23 -0.38 -6.46 16 6 C 0.06 0.92 6.84 37.20 0.25 1.17 16 7 C -0.14 -2.45 5.12 -26.60 -0.14 -2.59 16 8 C -0.11 -2.20 1.70 -91.59 -0.16 -2.35 16 9 H 0.08 1.52 5.13 -51.93 -0.27 1.25 16 10 C 0.52 12.96 5.12 -10.98 -0.06 12.91 16 11 O -0.52 -14.96 15.13 5.57 0.08 -14.88 16 12 N -0.41 -10.46 2.07 -60.71 -0.13 -10.59 16 13 C -0.34 -9.49 8.78 -14.90 -0.13 -9.63 16 14 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 15 C 0.07 1.96 5.00 -17.49 -0.09 1.87 16 16 N -0.85 -24.52 12.45 55.49 0.69 -23.83 16 17 Si 0.92 21.75 29.56 -169.99 -5.02 16.72 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.39 8.45 3.80 -154.64 -0.59 7.87 16 22 C -0.18 -3.44 7.69 -39.22 -0.30 -3.74 16 23 C -0.07 -1.06 10.17 -39.31 -0.40 -1.46 16 24 C -0.21 -2.83 10.11 -39.40 -0.40 -3.22 16 25 C 0.11 1.70 11.01 -17.57 -0.19 1.50 16 26 N -0.49 -9.78 8.35 -12.34 -0.10 -9.88 16 27 H 0.08 1.64 5.93 -51.93 -0.31 1.34 16 28 H 0.05 0.82 7.00 -51.93 -0.36 0.46 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.64 7.76 -51.93 -0.40 1.23 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.27 7.31 8.32 -40.82 -0.34 6.97 16 37 H 0.13 2.60 8.00 -52.49 -0.42 2.18 16 38 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.15 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -32.78 322.06 -7.44 -40.22 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.53 Total: 4.65 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.91 Total: -0.82 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.46 Total: -44.30 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.29 Total: -21.34 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.78 -7.44 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.594 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds