Wall clock time and date at job start Tue Mar 31 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.52293 * 2 1 4 4 C 1.53097 * 109.52159 * 239.87445 * 2 1 3 5 5 O 1.42912 * 109.40805 * 182.55543 * 4 2 1 6 6 C 1.42903 * 114.15600 * 61.05838 * 5 4 2 7 7 C 1.53090 * 109.41431 * 298.87608 * 6 5 4 8 8 C 1.53171 * 109.16566 * 57.60733 * 7 6 5 9 9 H 1.08994 * 109.54520 * 62.88843 * 8 7 6 10 10 C 1.50701 * 109.54337 * 183.15554 * 8 7 6 11 11 O 1.21269 * 120.00246 * 33.88771 * 10 8 7 12 12 N 1.34778 * 119.99965 * 213.88764 * 10 8 7 13 13 C 1.37211 * 120.00160 * 182.51980 * 12 10 8 14 14 H 1.07994 * 120.00460 * 115.70376 * 13 12 10 15 15 C 1.38897 * 119.99563 * 295.70251 * 13 12 10 16 16 N 1.31413 * 120.00172 * 358.72098 * 15 13 12 17 17 Si 1.86804 * 119.99672 * 178.72645 * 15 13 12 18 18 H 1.48500 * 109.47282 * 60.00074 * 17 15 13 19 19 H 1.48502 * 109.46964 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47003 * 299.99708 * 17 15 13 21 21 C 1.39430 * 120.00174 * 2.52026 * 12 10 8 22 22 C 1.39067 * 119.69631 * 64.64614 * 21 12 10 23 23 C 1.38382 * 119.09730 * 179.77850 * 22 21 12 24 24 C 1.38825 * 118.49252 * 0.49141 * 23 22 21 25 25 C 1.38149 * 119.30927 * 359.75328 * 24 23 22 26 26 N 1.31872 * 120.85261 * 359.97438 * 25 24 23 27 27 H 1.08994 * 109.47195 * 300.00120 * 1 2 3 28 28 H 1.08997 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46579 * 60.00020 * 1 2 3 30 30 H 1.08998 * 109.47695 * 302.46635 * 4 2 1 31 31 H 1.08990 * 109.48179 * 62.50591 * 4 2 1 32 32 H 1.08999 * 109.48172 * 178.89172 * 6 5 4 33 33 H 1.09000 * 109.48183 * 58.85514 * 6 5 4 34 34 H 1.09002 * 109.51940 * 297.69998 * 7 6 5 35 35 H 1.08998 * 109.52291 * 177.52057 * 7 6 5 36 36 H 0.97002 * 119.99694 * 184.99573 * 16 15 13 37 37 H 1.07996 * 120.45273 * 0.02562 * 22 21 12 38 38 H 1.08002 * 120.75127 * 180.22317 * 23 22 21 39 39 H 1.08000 * 120.34715 * 179.73122 * 24 23 22 40 40 H 1.08005 * 119.57245 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2481 5 8 3.4695 -0.7750 -1.2158 6 6 4.0044 -1.4817 -0.0948 7 6 3.5715 -0.7865 1.1986 8 6 2.0419 -0.7246 1.2487 9 1 1.6367 -1.7361 1.2751 10 6 1.6078 0.0266 2.4809 11 8 2.2783 0.9473 2.8974 12 7 0.4744 -0.3248 3.1200 13 6 0.0519 0.3916 4.2113 14 1 -0.8789 0.9378 4.1714 15 6 0.8213 0.4141 5.3675 16 7 1.9413 -0.2709 5.4250 17 14 0.2638 1.4181 6.8409 18 1 -1.0607 0.9287 7.3008 19 1 1.2531 1.2764 7.9393 20 1 0.1562 2.8476 6.4537 21 6 -0.2687 -1.4163 2.6723 22 6 0.2806 -2.6927 2.7265 23 6 -0.4696 -3.7676 2.2832 24 6 -1.7445 -3.5267 1.7894 25 6 -2.2249 -2.2317 1.7601 26 7 -1.4889 -1.2274 2.1946 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 -0.8900 30 1 1.6432 -1.7385 -1.2686 31 1 1.7160 -0.1874 -2.1389 32 1 5.0926 -1.4905 -0.1562 33 1 3.6316 -2.5060 -0.0993 34 1 3.9780 0.2246 1.2223 35 1 3.9417 -1.3489 2.0558 36 1 2.4413 -0.3141 6.2550 37 1 1.2777 -2.8434 3.1131 38 1 -0.0707 -4.7707 2.3165 39 1 -2.3543 -4.3430 1.4315 40 1 -3.2160 -2.0394 1.3764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:23 Heat of formation + Delta-G solvation = -55.355961 kcal Electronic energy + Delta-G solvation = -24779.445519 eV Core-core repulsion = 21365.774712 eV Total energy + Delta-G solvation = -3413.670808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.93675 -40.44165 -39.29110 -36.33182 -35.47233 -33.89941 -33.36864 -32.92934 -30.70932 -28.28410 -27.51339 -26.02495 -24.30793 -23.99343 -23.26709 -22.03164 -20.55098 -19.40199 -18.47468 -17.43719 -17.11036 -16.99588 -16.89909 -16.65848 -16.00566 -15.74537 -15.51549 -15.47036 -14.88931 -14.58297 -14.45846 -14.10497 -13.88550 -13.70198 -13.34221 -13.17677 -12.98242 -12.91434 -12.80273 -12.68582 -12.28750 -12.20147 -12.02726 -11.54291 -11.40839 -10.92840 -10.78956 -10.63430 -10.49790 -10.20658 -9.78880 -9.03310 -8.32068 -6.36024 0.29774 0.52776 1.30886 1.37723 1.42928 2.09636 2.26630 2.77849 2.92968 2.97357 3.06862 3.60297 3.64662 3.76077 3.90355 4.00274 4.15303 4.21825 4.24689 4.37604 4.39191 4.42227 4.46263 4.53611 4.60057 4.71185 4.73206 4.83950 4.91483 4.95559 5.07526 5.12165 5.25285 5.30010 5.35849 5.38008 5.42970 5.87081 6.20357 6.27319 6.89659 6.96549 7.14787 7.58748 8.10085 8.75389 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013961 B = 0.007946 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.057218 B = 3522.886782 C = 4660.176206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.054 0.946 4 C 0.077 3.923 5 O -0.395 6.395 6 C 0.072 3.928 7 C -0.134 4.134 8 C -0.102 4.102 9 H 0.094 0.906 10 C 0.507 3.493 11 O -0.580 6.580 12 N -0.423 5.423 13 C -0.358 4.358 14 H 0.062 0.938 15 C 0.021 3.979 16 N -0.883 5.883 17 Si 0.980 3.020 18 H -0.258 1.258 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.355 3.645 22 C -0.199 4.199 23 C -0.059 4.059 24 C -0.180 4.180 25 C 0.103 3.897 26 N -0.521 5.521 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.266 0.734 37 H 0.111 0.889 38 H 0.167 0.833 39 H 0.177 0.823 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 -11.006 -12.021 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.072 0.928 4 C 0.001 3.999 5 O -0.314 6.314 6 C -0.005 4.005 7 C -0.173 4.173 8 C -0.123 4.123 9 H 0.112 0.888 10 C 0.297 3.703 11 O -0.459 6.459 12 N -0.143 5.143 13 C -0.485 4.485 14 H 0.080 0.920 15 C -0.184 4.184 16 N -0.517 5.517 17 Si 0.803 3.197 18 H -0.183 1.183 19 H -0.200 1.200 20 H -0.201 1.201 21 C 0.130 3.870 22 C -0.221 4.221 23 C -0.085 4.085 24 C -0.199 4.199 25 C -0.056 4.056 26 N -0.235 5.235 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.185 0.815 39 H 0.194 0.806 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.815 -9.555 -11.837 15.683 hybrid contribution 0.201 0.089 1.828 1.841 sum -3.614 -9.466 -10.009 14.242 Atomic orbital electron populations 1.21777 0.93192 1.02138 1.02098 1.21687 0.97223 0.99484 0.94556 0.92756 1.22707 0.80315 1.00356 0.96553 1.87870 1.21092 1.76997 1.45414 1.22664 1.00159 0.94583 0.83071 1.22008 0.93639 1.01821 0.99812 1.21495 0.97562 1.00201 0.93089 0.88795 1.20985 0.81471 0.83851 0.83990 1.90464 1.54016 1.33223 1.68176 1.40846 1.21203 1.26188 1.26047 1.19071 1.07788 1.30321 0.91307 0.91998 1.26398 0.94471 0.96233 1.01294 1.69913 1.14250 1.40301 1.27231 0.85246 0.78496 0.78662 0.77322 1.18272 1.20049 1.20143 1.18852 0.89235 0.87516 0.91394 1.22124 1.02377 0.93069 1.04561 1.21822 0.93949 0.98991 0.93714 1.22441 0.96533 0.98888 1.02061 1.23204 0.99404 0.88412 0.94557 1.67372 1.06727 1.38095 1.11264 0.94418 0.92241 0.90446 0.91279 0.86466 0.86674 0.91069 0.92938 0.91804 0.92495 0.87082 0.81549 0.80572 0.80065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 7.42 71.98 0.53 -3.98 16 2 C -0.11 -3.85 2.40 -10.70 -0.03 -3.87 16 3 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.08 2.03 6.13 72.01 0.44 2.47 16 5 O -0.39 -11.52 10.76 -148.98 -1.60 -13.12 16 6 C 0.07 1.95 6.84 72.01 0.49 2.45 16 7 C -0.13 -5.03 5.12 30.68 0.16 -4.88 16 8 C -0.10 -4.11 1.70 -11.42 -0.02 -4.13 16 9 H 0.09 3.52 5.13 -2.39 -0.01 3.51 16 10 C 0.51 27.06 5.12 87.66 0.45 27.51 16 11 O -0.58 -36.49 15.13 -2.99 -0.05 -36.54 16 12 N -0.42 -22.70 2.07 -464.38 -0.96 -23.66 16 13 C -0.36 -21.33 8.78 84.01 0.74 -20.59 16 14 H 0.06 3.76 7.83 -2.91 -0.02 3.73 16 15 C 0.02 1.25 5.00 84.91 0.42 1.68 16 16 N -0.88 -53.63 12.45 21.65 0.27 -53.36 16 17 Si 0.98 46.49 29.56 68.60 2.03 48.52 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 C 0.35 15.63 3.80 132.90 0.51 16.13 16 22 C -0.20 -7.40 7.69 22.50 0.17 -7.23 16 23 C -0.06 -1.50 10.17 22.44 0.23 -1.27 16 24 C -0.18 -3.88 10.11 22.39 0.23 -3.66 16 25 C 0.10 2.81 11.01 84.67 0.93 3.74 16 26 N -0.52 -20.48 8.35 -192.95 -1.61 -22.09 16 27 H 0.04 1.59 5.93 -2.39 -0.01 1.58 16 28 H 0.06 1.85 7.00 -2.39 -0.02 1.83 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 2.24 7.76 -2.39 -0.02 2.22 16 35 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.27 15.32 8.32 -92.71 -0.77 14.55 16 37 H 0.11 4.52 8.00 -2.91 -0.02 4.49 16 38 H 0.17 2.91 8.06 -2.91 -0.02 2.89 16 39 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.18 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -79.92 322.06 4.37 -75.55 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 1.04 Total: 20.33 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.26 Total: 4.37 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -2.30 Total: -99.11 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -1.65 Total: -49.66 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -79.92 4.37 -75.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.193 kcal (2) G-P(sol) polarization free energy of solvation -79.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds