Wall clock time and date at job start Tue Mar 31 2020 06:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50696 * 119.99874 * 2 1 4 4 O 1.42896 * 109.47080 * 134.99756 * 3 2 1 5 5 C 1.42902 * 114.00300 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47444 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47092 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47322 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99629 * 4.99584 * 8 7 6 10 10 N 1.34769 * 120.00298 * 184.99732 * 8 7 6 11 11 C 1.37208 * 120.00389 * 4.96749 * 10 8 7 12 12 H 1.08001 * 119.99905 * 50.16450 * 11 10 8 13 13 C 1.38894 * 120.00489 * 230.17352 * 11 10 8 14 14 N 1.31414 * 119.99700 * 7.35362 * 13 11 10 15 15 Si 1.86797 * 120.00334 * 187.36061 * 13 11 10 16 16 H 1.48497 * 109.47567 * 89.99294 * 15 13 11 17 17 H 1.48499 * 109.47247 * 209.99981 * 15 13 11 18 18 H 1.48501 * 109.46909 * 329.99581 * 15 13 11 19 19 C 1.39428 * 119.99914 * 184.97378 * 10 8 7 20 20 C 1.39075 * 119.69657 * 184.99852 * 19 10 8 21 21 C 1.38383 * 119.09774 * 180.02562 * 20 19 10 22 22 C 1.38829 * 118.49169 * 0.02562 * 21 20 19 23 23 C 1.38146 * 119.31415 * 0.24813 * 22 21 20 24 24 N 1.31888 * 120.84781 * 359.47880 * 23 22 21 25 25 H 1.07998 * 120.00308 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99341 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99943 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.47027 * 15.00185 * 3 2 1 29 29 H 1.09000 * 109.47325 * 255.00263 * 3 2 1 30 30 H 1.08990 * 109.47110 * 59.99853 * 5 4 3 31 31 H 1.09003 * 109.46881 * 300.00162 * 5 4 3 32 32 H 1.09003 * 109.47078 * 59.99702 * 6 5 4 33 33 H 1.09003 * 109.46894 * 299.99763 * 6 5 4 34 34 H 1.09003 * 109.47160 * 60.00050 * 7 6 5 35 35 H 1.08993 * 109.47297 * 300.00032 * 7 6 5 36 36 H 0.96996 * 119.99886 * 174.99314 * 14 13 11 37 37 H 1.07997 * 120.45205 * 0.04036 * 20 19 10 38 38 H 1.07993 * 120.75081 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.34320 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.57851 * 179.74929 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0329 6 6 5.0106 2.2541 2.0778 7 6 5.8471 3.5322 2.1632 8 6 6.9331 3.3541 3.1928 9 8 7.0858 2.2791 3.7332 10 7 7.7345 4.3892 3.5131 11 6 7.4983 5.6307 2.9788 12 1 6.5079 6.0590 3.0253 13 6 8.5326 6.3365 2.3779 14 7 9.6992 5.7610 2.1912 15 14 8.2657 8.1040 1.8355 16 1 8.6178 9.0220 2.9483 17 1 9.1261 8.3966 0.6611 18 1 6.8406 8.2983 1.4657 19 6 8.8038 4.1984 4.3873 20 6 9.5632 5.2897 4.7953 21 6 10.6220 5.0862 5.6628 22 6 10.8861 3.7931 6.0935 23 6 10.0937 2.7550 5.6429 24 7 9.0878 2.9800 4.8201 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9354 -0.0004 28 1 1.3855 2.1161 0.2660 29 1 2.4755 1.4868 -0.9926 30 1 3.2678 3.2694 1.3205 31 1 4.3580 2.6409 0.0618 32 1 5.6505 1.4200 1.7897 33 1 4.5606 2.0483 3.0491 34 1 5.2075 4.3666 2.4511 35 1 6.2970 3.7376 1.1919 36 1 10.3983 6.2277 1.7072 37 1 9.3296 6.2826 4.4403 38 1 11.2290 5.9144 5.9971 39 1 11.7053 3.6001 6.7702 40 1 10.2979 1.7469 5.9720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892472183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:26 Heat of formation + Delta-G solvation = -11.398818 kcal Electronic energy + Delta-G solvation = -22460.353120 eV Core-core repulsion = 19048.588437 eV Total energy + Delta-G solvation = -3411.764683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.71750 -38.25590 -37.74807 -35.13247 -34.30570 -32.68337 -32.08919 -30.98050 -29.30983 -27.08569 -25.42086 -25.18123 -22.74459 -22.06035 -21.11084 -19.99894 -19.17478 -17.91928 -16.65384 -16.36914 -16.04693 -15.65891 -15.26576 -15.06086 -14.74683 -14.51326 -14.08095 -13.88648 -13.44912 -13.25443 -12.96693 -12.51309 -12.42819 -12.06781 -11.85327 -11.65438 -11.50388 -11.33037 -11.12926 -11.08333 -10.79055 -10.72290 -10.47374 -10.41030 -9.84814 -9.38217 -9.36712 -8.97564 -8.89348 -8.65409 -7.88106 -6.99775 -6.44355 -4.52621 1.97512 2.28415 2.48134 2.99607 3.07970 3.10365 3.71514 3.83070 3.96404 4.45519 4.69857 4.84181 4.95590 5.21234 5.23900 5.29531 5.34534 5.41729 5.54275 5.61085 5.67695 5.74672 5.86606 5.95735 6.05402 6.10435 6.30851 6.36262 6.39601 6.46036 6.53855 6.63197 6.74250 6.87683 7.13590 7.20061 7.28480 7.30208 7.59363 7.94776 8.23290 8.82428 8.92475 9.37603 9.81058 10.44105 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.003827 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.486329 B = 7314.200703 C = 8796.183239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C 0.086 3.914 4 O -0.385 6.385 5 C 0.064 3.936 6 C -0.103 4.103 7 C -0.115 4.115 8 C 0.492 3.508 9 O -0.522 6.522 10 N -0.389 5.389 11 C -0.360 4.360 12 H 0.098 0.902 13 C 0.051 3.949 14 N -0.845 5.845 15 Si 0.920 3.080 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.265 1.265 19 C 0.386 3.614 20 C -0.143 4.143 21 C -0.081 4.081 22 C -0.238 4.238 23 C 0.106 3.894 24 N -0.495 5.495 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.276 0.724 37 H 0.135 0.865 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.641 -1.215 -2.858 9.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.164 4.164 3 C 0.010 3.990 4 O -0.304 6.304 5 C -0.013 4.013 6 C -0.141 4.141 7 C -0.155 4.155 8 C 0.282 3.718 9 O -0.398 6.398 10 N -0.101 5.101 11 C -0.488 4.488 12 H 0.115 0.885 13 C -0.159 4.159 14 N -0.477 5.477 15 Si 0.745 3.255 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.189 1.189 19 C 0.155 3.845 20 C -0.167 4.167 21 C -0.107 4.107 22 C -0.261 4.261 23 C -0.053 4.053 24 N -0.211 5.211 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.134 0.866 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.153 0.847 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.934 -2.570 -2.880 9.732 hybrid contribution 0.720 2.003 -0.407 2.167 sum -8.214 -0.567 -3.287 8.866 Atomic orbital electron populations 1.23810 0.95575 1.02123 1.00864 1.22809 0.95644 0.98454 0.99535 1.21512 0.89220 0.95552 0.92732 1.87922 1.44457 1.37865 1.60172 1.22591 0.92836 0.86524 0.99317 1.21263 0.95496 0.98549 0.98759 1.21272 0.96369 0.97764 1.00091 1.20829 0.83976 0.83572 0.83460 1.90668 1.70872 1.25560 1.52694 1.41196 1.23434 1.09325 1.36155 1.19404 0.97795 0.92907 1.38654 0.88474 1.25630 0.95064 1.00313 0.94865 1.69968 1.03896 1.38112 1.35701 0.86039 0.79011 0.81817 0.78627 1.19775 1.20534 1.18934 1.18829 0.89674 0.88377 0.87584 1.21507 0.96600 1.00477 0.98159 1.21144 0.96693 0.96431 0.96408 1.21629 1.03641 0.94368 1.06423 1.22265 0.90729 0.98238 0.94043 1.67597 1.17933 1.22326 1.13258 0.88496 0.87928 0.86575 0.92944 0.92444 0.93317 0.93222 0.90622 0.90954 0.89570 0.88965 0.91356 0.84691 0.86750 0.86954 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 14.31 29.01 0.42 -1.17 16 2 C -0.15 -1.51 9.89 -36.03 -0.36 -1.86 16 3 C 0.09 0.97 6.35 36.00 0.23 1.20 16 4 O -0.38 -5.68 10.33 -35.23 -0.36 -6.04 16 5 C 0.06 0.90 5.94 37.16 0.22 1.12 16 6 C -0.10 -1.77 4.89 -26.73 -0.13 -1.90 16 7 C -0.11 -2.17 4.62 -27.89 -0.13 -2.30 16 8 C 0.49 12.01 7.58 -10.99 -0.08 11.92 16 9 O -0.52 -14.00 14.28 5.56 0.08 -13.92 16 10 N -0.39 -9.94 2.68 -60.71 -0.16 -10.10 16 11 C -0.36 -8.62 7.67 -14.90 -0.11 -8.74 16 12 H 0.10 2.16 7.36 -52.49 -0.39 1.77 16 13 C 0.05 1.20 3.59 -17.49 -0.06 1.13 16 14 N -0.84 -21.53 11.12 55.49 0.62 -20.91 16 15 Si 0.92 17.93 29.56 -169.99 -5.03 12.91 16 16 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 17 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 19 C 0.39 10.06 6.63 -154.64 -1.02 9.04 16 20 C -0.14 -3.42 7.61 -39.22 -0.30 -3.72 16 21 C -0.08 -1.66 10.17 -39.31 -0.40 -2.06 16 22 C -0.24 -4.65 10.11 -39.40 -0.40 -5.05 16 23 C 0.11 2.30 11.18 -17.56 -0.20 2.11 16 24 N -0.50 -12.82 7.92 -12.34 -0.10 -12.92 16 25 H 0.10 0.73 7.90 -52.49 -0.41 0.32 16 26 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 27 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 28 H 0.05 0.53 7.86 -51.92 -0.41 0.12 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.41 8.05 -51.93 -0.42 1.00 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.48 7.54 -51.93 -0.39 1.09 16 35 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.28 6.65 8.32 -40.82 -0.34 6.31 16 37 H 0.14 3.26 5.55 -52.49 -0.29 2.97 16 38 H 0.11 1.97 8.06 -52.49 -0.42 1.55 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.14 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 341.30 15.07 5.14 5.14 Total: -1.00 -30.54 341.30 -7.81 -38.35 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.67 Total: 7.78 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.33 Total: -0.28 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.36 Total: -43.94 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.28 Total: -19.97 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.54 -7.81 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.950 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds