Wall clock time and date at job start Tue Mar 31 2020 06:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50696 * 119.99874 * 2 1 4 4 O 1.42896 * 109.47080 * 134.99756 * 3 2 1 5 5 C 1.42902 * 114.00300 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47444 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47092 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47322 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99629 * 4.99584 * 8 7 6 10 10 N 1.34769 * 120.00298 * 184.99732 * 8 7 6 11 11 C 1.37208 * 120.00389 * 4.96749 * 10 8 7 12 12 H 1.08001 * 119.99905 * 50.16450 * 11 10 8 13 13 C 1.38894 * 120.00489 * 230.17352 * 11 10 8 14 14 N 1.31414 * 119.99700 * 7.35362 * 13 11 10 15 15 Si 1.86797 * 120.00334 * 187.36061 * 13 11 10 16 16 H 1.48497 * 109.47567 * 89.99294 * 15 13 11 17 17 H 1.48499 * 109.47247 * 209.99981 * 15 13 11 18 18 H 1.48501 * 109.46909 * 329.99581 * 15 13 11 19 19 C 1.39428 * 119.99914 * 184.97378 * 10 8 7 20 20 C 1.39075 * 119.69657 * 184.99852 * 19 10 8 21 21 C 1.38383 * 119.09774 * 180.02562 * 20 19 10 22 22 C 1.38829 * 118.49169 * 0.02562 * 21 20 19 23 23 C 1.38146 * 119.31415 * 0.24813 * 22 21 20 24 24 N 1.31888 * 120.84781 * 359.47880 * 23 22 21 25 25 H 1.07998 * 120.00308 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.99341 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99943 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.47027 * 15.00185 * 3 2 1 29 29 H 1.09000 * 109.47325 * 255.00263 * 3 2 1 30 30 H 1.08990 * 109.47110 * 59.99853 * 5 4 3 31 31 H 1.09003 * 109.46881 * 300.00162 * 5 4 3 32 32 H 1.09003 * 109.47078 * 59.99702 * 6 5 4 33 33 H 1.09003 * 109.46894 * 299.99763 * 6 5 4 34 34 H 1.09003 * 109.47160 * 60.00050 * 7 6 5 35 35 H 1.08993 * 109.47297 * 300.00032 * 7 6 5 36 36 H 0.96996 * 119.99886 * 174.99314 * 14 13 11 37 37 H 1.07997 * 120.45205 * 0.04036 * 20 19 10 38 38 H 1.07993 * 120.75081 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.34320 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.57851 * 179.74929 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0329 6 6 5.0106 2.2541 2.0778 7 6 5.8471 3.5322 2.1632 8 6 6.9331 3.3541 3.1928 9 8 7.0858 2.2791 3.7332 10 7 7.7345 4.3892 3.5131 11 6 7.4983 5.6307 2.9788 12 1 6.5079 6.0590 3.0253 13 6 8.5326 6.3365 2.3779 14 7 9.6992 5.7610 2.1912 15 14 8.2657 8.1040 1.8355 16 1 8.6178 9.0220 2.9483 17 1 9.1261 8.3966 0.6611 18 1 6.8406 8.2983 1.4657 19 6 8.8038 4.1984 4.3873 20 6 9.5632 5.2897 4.7953 21 6 10.6220 5.0862 5.6628 22 6 10.8861 3.7931 6.0935 23 6 10.0937 2.7550 5.6429 24 7 9.0878 2.9800 4.8201 25 1 -0.5400 0.9353 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9354 -0.0004 28 1 1.3855 2.1161 0.2660 29 1 2.4755 1.4868 -0.9926 30 1 3.2678 3.2694 1.3205 31 1 4.3580 2.6409 0.0618 32 1 5.6505 1.4200 1.7897 33 1 4.5606 2.0483 3.0491 34 1 5.2075 4.3666 2.4511 35 1 6.2970 3.7376 1.1919 36 1 10.3983 6.2277 1.7072 37 1 9.3296 6.2826 4.4403 38 1 11.2290 5.9144 5.9971 39 1 11.7053 3.6001 6.7702 40 1 10.2979 1.7469 5.9720 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892472183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:25 Heat of formation + Delta-G solvation = -28.496417 kcal Electronic energy + Delta-G solvation = -22461.094527 eV Core-core repulsion = 19048.588437 eV Total energy + Delta-G solvation = -3412.506090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49732 -39.75399 -39.05653 -36.93320 -35.30927 -33.98192 -33.85723 -32.73263 -30.99414 -28.32607 -27.11458 -26.35844 -24.34894 -23.72795 -22.54635 -21.01019 -20.73410 -19.62878 -18.09701 -17.54456 -17.46287 -17.24812 -16.77923 -16.46267 -16.27066 -16.03198 -15.63510 -15.18003 -15.13664 -14.60433 -14.43852 -13.98821 -13.67793 -13.56099 -13.39574 -13.16001 -13.01375 -12.85996 -12.67368 -12.37774 -12.12196 -12.00161 -11.85722 -11.78860 -11.14494 -10.80423 -10.78801 -10.66627 -10.41798 -10.22614 -9.67708 -8.79935 -8.22679 -6.38241 0.55314 0.76621 1.24739 1.46156 1.49879 1.61212 2.05481 2.26177 2.57737 2.90348 3.01606 3.46148 3.82834 4.02235 4.03854 4.10044 4.19630 4.21723 4.36254 4.42287 4.51213 4.56351 4.59154 4.60695 4.65417 4.67789 4.77189 4.89706 4.99515 5.17259 5.18708 5.30901 5.39065 5.44037 5.59757 5.66267 5.73617 5.90951 6.16667 6.29379 6.42230 7.01150 7.16880 7.54933 8.01512 8.67281 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016718 B = 0.003827 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.486329 B = 7314.200703 C = 8796.183239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.176 4.176 3 C 0.081 3.919 4 O -0.411 6.411 5 C 0.071 3.929 6 C -0.093 4.093 7 C -0.101 4.101 8 C 0.472 3.528 9 O -0.561 6.561 10 N -0.403 5.403 11 C -0.373 4.373 12 H 0.111 0.889 13 C 0.016 3.984 14 N -0.882 5.882 15 Si 0.989 3.011 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.249 1.249 19 C 0.348 3.652 20 C -0.161 4.161 21 C -0.079 4.079 22 C -0.219 4.219 23 C 0.087 3.913 24 N -0.536 5.536 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.275 0.725 37 H 0.125 0.875 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 0.260 -2.908 9.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.006 3.994 4 O -0.332 6.332 5 C -0.005 4.005 6 C -0.131 4.131 7 C -0.140 4.140 8 C 0.263 3.737 9 O -0.440 6.440 10 N -0.115 5.115 11 C -0.500 4.500 12 H 0.128 0.872 13 C -0.189 4.189 14 N -0.516 5.516 15 Si 0.811 3.189 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.173 1.173 19 C 0.119 3.881 20 C -0.185 4.185 21 C -0.105 4.105 22 C -0.241 4.241 23 C -0.071 4.071 24 N -0.253 5.253 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.127 0.873 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.143 0.857 38 H 0.170 0.830 39 H 0.178 0.822 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.488 -1.089 -2.924 9.988 hybrid contribution 0.943 1.464 -0.285 1.765 sum -8.545 0.374 -3.209 9.135 Atomic orbital electron populations 1.24056 0.94935 1.03483 0.97947 1.22823 0.96402 0.97930 1.02262 1.21723 0.88639 0.96608 0.92457 1.87879 1.45561 1.38221 1.61500 1.22460 0.92253 0.87060 0.98710 1.21110 0.95927 0.96843 0.99209 1.21210 0.95170 0.99237 0.98414 1.21785 0.84827 0.83032 0.84013 1.90616 1.72203 1.26829 1.54358 1.41541 1.23586 1.10024 1.36398 1.19816 0.98682 0.92745 1.38755 0.87164 1.26427 0.94298 1.03930 0.94288 1.70117 1.04897 1.39863 1.36680 0.84991 0.79529 0.76551 0.77823 1.19468 1.20959 1.17269 1.19236 0.90841 0.89170 0.88895 1.21548 0.97922 0.99473 0.99568 1.21627 0.95644 0.98263 0.94924 1.22079 1.03518 0.93097 1.05365 1.22897 0.90262 1.00429 0.93496 1.67559 1.19937 1.22933 1.14877 0.87240 0.86411 0.87276 0.91520 0.91488 0.91251 0.91845 0.93029 0.92449 0.87501 0.88527 0.91543 0.85713 0.83045 0.82227 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 14.31 67.77 0.97 -1.54 16 2 C -0.18 -3.47 9.89 25.64 0.25 -3.22 16 3 C 0.08 1.74 6.35 71.23 0.45 2.19 16 4 O -0.41 -12.00 10.33 -148.98 -1.54 -13.54 16 5 C 0.07 1.95 5.94 71.98 0.43 2.38 16 6 C -0.09 -3.27 4.89 30.59 0.15 -3.13 16 7 C -0.10 -3.86 4.62 29.85 0.14 -3.73 16 8 C 0.47 23.96 7.58 87.66 0.66 24.63 16 9 O -0.56 -31.71 14.28 -3.03 -0.04 -31.76 16 10 N -0.40 -21.23 2.68 -464.37 -1.24 -22.47 16 11 C -0.37 -18.02 7.67 84.01 0.64 -17.38 16 12 H 0.11 4.84 7.36 -2.91 -0.02 4.82 16 13 C 0.02 0.77 3.59 84.91 0.31 1.08 16 14 N -0.88 -45.61 11.12 21.65 0.24 -45.37 16 15 Si 0.99 36.12 29.56 68.60 2.03 38.14 16 16 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 17 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.25 -8.40 7.11 99.48 0.71 -7.70 16 19 C 0.35 18.63 6.63 132.91 0.88 19.52 16 20 C -0.16 -7.73 7.61 22.51 0.17 -7.56 16 21 C -0.08 -3.09 10.17 22.45 0.23 -2.86 16 22 C -0.22 -7.99 10.11 22.39 0.23 -7.76 16 23 C 0.09 3.73 11.18 84.66 0.95 4.68 16 24 N -0.54 -28.51 7.92 -192.95 -1.53 -30.03 16 25 H 0.11 1.36 7.90 -2.91 -0.02 1.34 16 26 H 0.12 1.39 8.06 -2.91 -0.02 1.36 16 27 H 0.11 2.24 8.06 -2.91 -0.02 2.21 16 28 H 0.07 1.21 7.86 -2.38 -0.02 1.19 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 2.03 8.05 -2.39 -0.02 2.02 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 3.61 7.54 -2.39 -0.02 3.59 16 35 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.27 13.43 8.32 -92.71 -0.77 12.66 16 37 H 0.13 6.11 5.55 -2.91 -0.02 6.09 16 38 H 0.15 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.16 5.82 8.06 -2.91 -0.02 5.79 16 Total: -1.00 -69.40 341.30 5.39 -64.01 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 1.02 Total: 33.72 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 6.46 Total: 7.30 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -2.53 Total: -97.87 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -1.58 Total: -45.29 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.14 kcal Total: -69.40 5.39 -64.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892472183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.511 kcal (2) G-P(sol) polarization free energy of solvation -69.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds